TCONS_00004271 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004271
Unique NameTCONS_00004271
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length920

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004271 ID=TCONS_00004271|Name=TCONS_00004271|organism=Clytia hemisphaerica|type=transcript|length=920bp
CTTCGCCATGTTCTCATATAAGTTAATGTCATCGTTAGAGGTGCATTCGT
TTCATTCTATGAGCTGTTTTGTGTTTCAGGTTGTATAGAACTTGTATTCT
CATTGGTGGCTGGTTACTTTCACAATGAGGTTGTTGACGTTATTGGCGTT
AGCGGTATTGGCGGTGGGCGTTCTTTCCTCAACTTTcaatgatgaagaag
aaaatcagaGATCACCGAGGATCAAAAGATTCAGTCTTTCGAAGAAATTC
AAGTTTTGGTTCAATCGAGACAAAGACAAgaatgaagaagacaagaatAC
TGAACGCAAAAAGAAATCTTTCGGTCAAAAGATCAAAGATGGATGGACGA
AATTCAAAAGCTGGGTCAAGAAACACAAGAGCAAGAAAAACAACCGATAC
CAAATGAAGAAAGAGGATGCGAAATCTCAATTACCAAAATATCTTCGTGA
TAAATATGCTCAAGGGAAGAAAGTGTTTCAGAGTGAACTTGATGAAGCCT
ACTTTAAAATGATGAAACAAAGAAGGCGTGGTGTCTCCATTATTGATATC
ATCAATAGCATCAACAAAGgaaatgacgtcaatttaCGACAAGTGGACAT
AGTGGAGCCGAAAGACGCACCCAAAGAATTACAAAATACAGGTGGTCGAA
ATCGACGTGACGTCATGCGAGAGAGGTTTTATCTGTGGCACGATCGTATC
ATCCCGTatgaaatcaaagattttcaatcGACAGACGTGAATGCTATCAA
AAATGCTTTGAACGAAATTGAATCAAGAACTTGTTTGAAGTTTGTGCCAC
GAACCACCCAAATTAATTGGATTCAATATTTCAGAGGCACTGGATGTTAC
TCCAATGTTGGCAAAGTGTTTTGGCAGGAAGGATTTCAACAAATTTCGCT
CGGTTATGGCTGTATGACAA
Run BLAST on NCBI

protein sequence of TCONS_00004271-protein

>TCONS_00004271-protein ID=TCONS_00004271-protein|Name=TCONS_00004271-protein|organism=Clytia hemisphaerica|type=polypeptide|length=265bp
MRLLTLLALAVLAVGVLSSTFNDEEENQRSPRIKRFSLSKKFKFWFNRDK
DKNEEDKNTERKKKSFGQKIKDGWTKFKSWVKKHKSKKNNRYQMKKEDAK
SQLPKYLRDKYAQGKKVFQSELDEAYFKMMKQRRRGVSIIDIINSINKGN
DVNLRQVDIVEPKDAPKELQNTGGRNRRDVMRERFYLWHDRIIPYEIKDF
QSTDVNAIKNALNEIESRTCLKFVPRTTQINWIQYFRGTGCYSNVGKVFW
QEGFQQISLGYGCMT
Run BLAST on NCBI

transcript from alignment at sc0000041:234889..239302-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004271 ID=TCONS_00004271|Name=TCONS_00004271|organism=Clytia hemisphaerica|type=transcript|length=4414bp|location=Sequence derived from alignment at sc0000041:234889..239302- (Clytia hemisphaerica)
CTTCGCCATGTTCTCATATAAGTTAATGTCATCGTTAGAGGTGCATTCGT
TTCATTCTATGAGCTGTTTTGTGTTTCAGGTTGTATAGAACTTGTATTCT
CATTGGTGGCTGGTTACTTTCACAATGAGGTTGTTGACGTTATTGGCGTT
AGCGGTATTGGCGGTGGGCGTTCTTTCCTCAACTTTCAATGATGAAGAAG
AAAATCAGAGATCACCGAGGATCAAAAGATTCAGTAAGAATCCCCAAAAA
TAGTAATAAAAAATTACTGCGCTCCCGCAGTTTATGCTACAGAACACACC
TGTGTCACAGCCGTTTAGGCCCCAGCCCCACTAGAAAACTTGGCAAAAAT
TTCATCCCCAGTGGGAAAAATACCCTAGAATTTCAGCCCCAGTGAGAAAT
TGACTTTGATTTCATCCCCATTCGAAATTCCTTGTTTAGAAATTTCACTC
CAAAACCATCCCCATGGATTTTTCAACCTTGGAACAATATAACTTTCATC
CCCATTGAGATTTCAACCGAAATTTTCATTTCCGCCTTAAGGAAAAGTTT
TACCGGGGCTGTGAGGGGGTGTTAAAGAACATGAAAAGAGACTGAACATT
CTTTGCTGCTTGGAAATTTGATTTTTGTACGTCTGAATTTCAGGTCTTTC
GAAGAAATTCAAGTTTTGGTTCAATCGAGACAAAGACAAGAATGAAGAAG
ACAAGAATACTGAACGCAAAAAGAAATCTTTCGGTCAAAAGATCAAAGGT
AATGTGAAACGTCCTTATTTTTCTTCTTCATTTCCTTCTACGTTTGGGTT
GAGATGAATTGAGTTGCCTCGAATCATTTAAATCCTTTTCAACGTTTCAG
ATGGATGGACGAAATTCAAAAGCTGGGTCAAGAAACACAAGAGCAAGAAA
AGTAAGTACATTTGCTGCGAATCTTTGAAAAATGATATTAACCAACATCT
TAATCATAACTCTCCAACAGTCAGGGATATGTTCAAATTGGCTGATCACT
GGCTTATCGGTTATTTGACCTTACGCATGCGCTTAATTCAATTTTCTCTC
AAGAACTAGAGTTGATCCAAAGTCGAAATTCGGCACACATTCCTCACACA
TAAACCAATTGATATTTATTTAAAAGAAGACGCGACTATTGATATTTGGA
AAGAAATTCACAGCAATTTTCTAGTATTTAGGCTAATAAATTAACCTATA
TGATATTGTCTAATCAACCGATAATAGGTTAAACAACCGATGATCGGCTG
GTTTAAACATATTTCTGACCGTCTAATATTTTAAGTTACTTTATCGGCCG
AAACTTAGTCGGCCCTAAGTGACTAGATTTTGGCTTGGTGACTAAAATTT
GGGCCAACTAAAAATTTGGGCTGACTAAAATTAAGGCCGACTAAAAATTT
GGGCCGAATTAAAAGTTTATAATTAAGCTTTCCTTATTTTCCAGTATTTT
AAGCTTTCTCCTATTTTCCATCTGCTTGTAAATTTAGAAATGGCCCAAAT
TTTTTATCTGTCTTAATTATTAGTCGGCCCTTAGTGACTAAATTTTGACG
AGGCTGACTAATTATTAAGGCCGACTAAAATTAAGGCCGACTAAAATTAA
GGCCGACTAAGTTTTGGCCGATAAGGTATTTAGCTTGAAATTAAACTCAA
CTAATAATACCAATCAAATATACATTCCCTCTCACAGACAACCGATACCA
AATGAAGAAAGAGGATGCGAAATCTCAATTACCAAAATATCTTCGTGATA
AATATGCTCAAGGGAAGAAAGTGTTTCAGAGTGAACTTGATGAAGCCTAC
TTTAAAATGATGAAACAAAGAAGGCGTGGTGTCTCCATTATTGATATCAT
CAATAGCATCAACAAAGGTGTGGTTTGTTTATGTTTGTTTGTTTGTTTTC
TGATACTTCTACTACTCCCATCATGCTTTGTAACACCGCTAGCTCACAGT
CCCGGTGAAACTTTTTTTCTTAAGTGGGGATAAAAATCCCTATTGAATTC
TCAATGGTGATAGAAATTTCATCTTTCCAAAGTTAAAAAATTCAGTGGAG
ATGGTTTTGGAGTGCAATTTTGAGTGAAATTCCAGGGTAATTTACCACCG
GGAACCAAATTTTTGCCAAATTTTCCAGTTGGGAAGGGGTCCAGTGGGTC
TGTGACACAGGGGTGTTTTGTAATTTCAGAAACACGTAGATTTTGAATGA
TTTTAATATTTTTTTCTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGG
TCCTTTAAATTAACCCATGTCCGTTCGTCCGTTCGTCCGTTCGTTCGTCT
GTTGCCAGCTTTTCTCGGGATTGGCTCATTAGTTTTTTCTGATTTTTTGC
ACAATGATGCAAAATGGCGTTGCCCAAAATGTGACGGAGCCCGATTTTCG
GGAAAAAATTTTTTCCGGCCGAAAATGCCGGAAATATCCCGGAAAAACTG
ATTTTTTGGCACTTTCTCGAGATTTTATCATTAGTTTTTTCTGATTTTTT
GCTCAAAGATGCGTATTAACAATGCCCAAAACATGGCTGAGTCCGATTTT
TGAGAAATGCCGGAAATCGCCGTTTTTCTGGATTTTCATTGGACTTTTTC
CTTATAATTGGTTGTTTTTTCATTCAAAAACATCATTAATAGCAATGCCC
ACCATCAAGCATGTTTCAATTTTCAATAAAATTGATTTTTGAAGCCGGAA
CTATTCAAAAATCGCCGGAACAACCNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTACTTTAT
ATTTTTTTATGAAATTTTGCACACTGATGCAAAATGACAATACCTAAAAT
GTGATTGGGCCCGATTTTCGAAAAACATTTTTTCCGGCCGAAAATGCCGG
AAATATGCCGGAAAAATCGGTTTTTTTGACATTTTCTCGAATTTTCATCC
TTACTTTTCTCTGATTTTTTGCAGAATGATGCATATTCGCAATGCTCAAA
ACATGACCGAGTTCGATTTTTGAGAAAATGTTTTTTCCGGCCAAAAAAGC
CCGAAATTTTCGTTTTTGCAGATTTTCATTGGATTTTTTCGTTTCATGTC
TTTGTTTTTTTCAAACAAAAACATCATTTATAAGAATGTCCACGATTAAG
CATGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNTTTTTCAATTGTCTTATTACATCAAT
CTTCAGGTAGGTCCATTCAGCATGTAGCTTGTTGTTTCAGGAAATGACGT
CAATTTACGACAAGTGGACATAGTGGAGCCGAAAGACGCACCCAAAGAAT
TACAAAATACAGGTAGGCACCCGTAAATTGAAATCTTCCAAAGCAAAAAA
TGGGTTTTCCATGAAATTATATATTAGGAAGGTCGGAAGCATTTAAACTA
TGGAGTAGGGAAGAAAAAAAAAGCAAAAAGCAAAAAGCAAAAAAAGTAGA
CTTAGGCTGGAATACAAATCGAAGAACAGCAGATGTTAATTTCTGAGAGT
AATATTCGCCAACATAAAGACAAATAAATATCAAGATTTCTTGGTGAATA
TACGTGTAAAAGCAGATATTCAAAGAATCTATCTTAATTTTTCTAAAGGT
GGTCGAAATCGACGTGACGTCATGCGAGAGAGGTTTTATCTGTGGCACGA
TCGTATCATCCCGTATGAAATCAAAGATTTTCAATCGACAGGTAGGGGAG
TAATTTCTGTCTTACATTTTGAATGATTGGCCATGTTCCTAAATGATTTT
CTCATTCACTTCCGTTACCATTTTTTTATACACTTTCGTTTCCTTGTTAG
ACGTGAATGCTATCAAAAATGCTTTGAACGAAATTGAATCAAGAACTTGT
TTGAAGTTTGTGCCACGAACCACCCAAATTAATTGGATTCAATATTTCAG
AGGCACTGGGTAAGACATTTTTCATACTCTTTTTTCTATCTATCTATTCA
TTCAACATGCTGACATTTTGATTGATTTCCGCATTAGATGTTACTCCAAT
GTTGGCAAAGTGTTTTGGCAGGAAGGATTTCAACAAATTTCGCTCGGTTA
TGGCTGTATGACAA

Coding sequence (CDS) from alignment at sc0000041:234889..239302-

>TCONS_00004271 ID=TCONS_00004271|Name=TCONS_00004271|organism=Clytia hemisphaerica|type=CDS|length=795bp|location=Sequence derived from alignment at sc0000041:234889..239302- (Clytia hemisphaerica)
ATGAGGTTGTTGACGTTATTGGCGTTAGCGGTATTGGCGGTGGGCGTTCT
TTCCTCAACTTTCAATGATGAAGAAGAAAATCAGAGATCACCGAGGATCA
AAAGATTCAGTCTTTCGAAGAAATTCAAGTTTTGGTTCAATCGAGACAAA
GACAAGAATGAAGAAGACAAGAATACTGAACGCAAAAAGAAATCTTTCGG
TCAAAAGATCAAAGATGGATGGACGAAATTCAAAAGCTGGGTCAAGAAAC
ACAAGAGCAAGAAAAACAACCGATACCAAATGAAGAAAGAGGATGCGAAA
TCTCAATTACCAAAATATCTTCGTGATAAATATGCTCAAGGGAAGAAAGT
GTTTCAGAGTGAACTTGATGAAGCCTACTTTAAAATGATGAAACAAAGAA
GGCGTGGTGTCTCCATTATTGATATCATCAATAGCATCAACAAAGGAAAT
GACGTCAATTTACGACAAGTGGACATAGTGGAGCCGAAAGACGCACCCAA
AGAATTACAAAATACAGGTGGTCGAAATCGACGTGACGTCATGCGAGAGA
GGTTTTATCTGTGGCACGATCGTATCATCCCGTATGAAATCAAAGATTTT
CAATCGACAGACGTGAATGCTATCAAAAATGCTTTGAACGAAATTGAATC
AAGAACTTGTTTGAAGTTTGTGCCACGAACCACCCAAATTAATTGGATTC
AATATTTCAGAGGCACTGGATGTTACTCCAATGTTGGCAAAGTGTTTTGG
CAGGAAGGATTTCAACAAATTTCGCTCGGTTATGGCTGTATGACA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002372XLOC_002372Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004271-exon-sc0000041-1575043694:239070..239302TCONS_00004271-exon-sc0000041-1575043694:239070..239302Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:238555..238659TCONS_00004271-exon-sc0000041-1575043694:238555..238659Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:238402..238452TCONS_00004271-exon-sc0000041-1575043694:238402..238452Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:237436..237615TCONS_00004271-exon-sc0000041-1575043694:237436..237615Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:235641..235712TCONS_00004271-exon-sc0000041-1575043694:235641..235712Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:235262..235354TCONS_00004271-exon-sc0000041-1575043694:235262..235354Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:235044..235152TCONS_00004271-exon-sc0000041-1575043694:235044..235152Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1575043694:234889..234965TCONS_00004271-exon-sc0000041-1575043694:234889..234965Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:239070..239302TCONS_00004271-exon-sc0000041-1510915933:239070..239302Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:238555..238659TCONS_00004271-exon-sc0000041-1510915933:238555..238659Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:238402..238452TCONS_00004271-exon-sc0000041-1510915933:238402..238452Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:237436..237615TCONS_00004271-exon-sc0000041-1510915933:237436..237615Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:235641..235712TCONS_00004271-exon-sc0000041-1510915933:235641..235712Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:235262..235354TCONS_00004271-exon-sc0000041-1510915933:235262..235354Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:235044..235152TCONS_00004271-exon-sc0000041-1510915933:235044..235152Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1510915933:234889..234965TCONS_00004271-exon-sc0000041-1510915933:234889..234965Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:239070..239302TCONS_00004271-exon-sc0000041-1491911889:239070..239302Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:238555..238659TCONS_00004271-exon-sc0000041-1491911889:238555..238659Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:238402..238452TCONS_00004271-exon-sc0000041-1491911889:238402..238452Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:237436..237615TCONS_00004271-exon-sc0000041-1491911889:237436..237615Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:235641..235712TCONS_00004271-exon-sc0000041-1491911889:235641..235712Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:235262..235354TCONS_00004271-exon-sc0000041-1491911889:235262..235354Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:235044..235152TCONS_00004271-exon-sc0000041-1491911889:235044..235152Clytia hemisphaericaexon
TCONS_00004271-exon-sc0000041-1491911889:234889..234965TCONS_00004271-exon-sc0000041-1491911889:234889..234965Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004271-proteinTCONS_00004271-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:234889..239302 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.49695	1.21647	0.847462	0.331644	0.87478	1.11666	22.0684	24.3237	16.6932	12.6563	21.6876	15.4861	28.4735	25.5722	24.7355	31.4405	16.0697	22.1532	13.9503	17.0403	40.2842	40.1691	3.83324	4.83734	11.5719	6.55041	1.43683	2.19061	11.0767	22.2322
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004271 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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