|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004274 ID=TCONS_00004274|Name=TCONS_00004274|organism=Clytia hemisphaerica|type=transcript|length=4519bpRun BLAST on NCBI protein sequence of TCONS_00004274-protein >TCONS_00004274-protein ID=TCONS_00004274-protein|Name=TCONS_00004274-protein|organism=Clytia hemisphaerica|type=polypeptide|length=926bp MKIKEIQRTANVAWSPKQQYPIYLAAGTAAQQLDASFSTSAALDIYHVNLRun BLAST on NCBI transcript from alignment at sc0000041:254555..282680- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004274 ID=TCONS_00004274|Name=TCONS_00004274|organism=Clytia hemisphaerica|type=transcript|length=28126bp|location=Sequence derived from alignment at sc0000041:254555..282680- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000041:254555..282680- >TCONS_00004274 ID=TCONS_00004274|Name=TCONS_00004274|organism=Clytia hemisphaerica|type=CDS|length=2781bp|location=Sequence derived from alignment at sc0000041:254555..282680- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004274 vs. Swiss-Prot (Human)
Match: SC31A (Protein transport protein Sec31A OS=Homo sapiens GN=SEC31A PE=1 SV=3) HSP 1 Score: 691.419 bits (1783), Expect = 0.000e+0 Identity = 383/859 (44.59%), Postives = 554/859 (64.49%), Query Frame = 3
Query: 72 MKIKEIQRTANVAWSPKQQYPIYLAAGTAAQQLDASFSTSAALDIYHVNLESKEFDMPIVGSLPSQHRFHKLLWSDCGMDNDEHKNGLILGGTDNGELCVISAAAILNNKPEEAHVTTFSDHSGAVTALDINRFQSHIVASGGPDSEIFIWDLKNIXXXXXXXXXXXXXDQISCLAWNKQVQHILASSTQTGRVVVWDLRKSEPIIKVGDQSSMYHYKSIAWHPDVATQILIANEDDRSPVIQMWDLRFAASPMKVMEGHQRGILSLAWCPEDSDLLMSCGKDNKILCWDPNTHPQTGEIVYELPSTAQWTSDVCWCPRNPNVVSTTAFDGHITVSTLMGGXXXXXXXXXXXXXXXXFGIQQDAF-----TPPI---TQQPQVLRIEPLKKPPKWMRKPCAARFGFGGKLVSFGNVKEPGH--------PKQVFVSQVVTDTELINRSHELESSLMSGQLEAYCNLKISNAHEKEEELLWEFIKCNFSAEPRMQFLDLLGFNPQDLAKKIS-ALNAPPESSMNKSEPSGVNPTELAEKIENLQVAGESDGGEKLFGSGAVSPMAGSKTPGSESEGSALFDQIAAGTSTIPDTTEENIEQEMAPEPIEPFSIPTGDDTDGLICQALLAGNFEAAVDVCFNDQRMADGLLLAIAGGPDLFLKTQKRYLALTXXXXXXXXXXXXNRDWKSIVDGALVQNWREALSMLVTYSKAEEFSELCCMLGERLENEANDF--NAALICYVCAGDVERMVSCWTRSNTGKDASPLTLQSLIEKVMVLKKSTENNRSLVTDNTH--LAEQLCNYAKMLSSQGNLQTAMMYL-STVNNESVSILKDRVFRAHGQ-LQGF-APECPFQRLDL 2576
MK+KE+ RTA AWSP Q +PIYLA GT+AQQLDA+FST+A+L+I+ ++L DM + S HR+HKL+W MD+ +G+++ G +NG + + + I+ +E + H+G V ALD+N FQ+++VASG +SEI+IWDL N TP+TPG KT PP+ ISC+AWN+QVQHILAS++ +GR VWDLRK+EPIIKV D S+ H +AWHPDVATQ+++A+EDDR PVIQMWDLRFA+SP++V+E H RGIL++AW D +LL+SCGKD KILC +PN TGE++YELP+ QW D+ WCPRNP V+S +FDG I+V ++MGGS + +Q+Q ++S SFG D F PP+ Q Q + PLKKPPKW+R+P A F FGGKLV+F NV+ P H VF+SQVVT+ E ++RS +L+ ++ S YC KI + + E+ +W F+K NF + R ++L+LLG+ +DL KKI+ ALN K++ VA L S V+ G ++P +E + L + I EE E E P F+I D DGLI QALL GNFE+AVD+C +D RMAD ++LAIAGG +L +TQK+Y A ++S ++++++AVV ++WK IV+ ++NWREAL+ ++TY+K +EFS LC +LG RLENE + A +CY+CAG+VE++V+CWT++ G + PL+LQ LIEKV++L+K+ + +++ T LA ++ YA +L++QG++ A+ +L N ++ L+DR+ RA G+ + G +P+ P+++ L
Sbjct: 1 MKLKEVDRTAMQAWSPAQNHPIYLATGTSAQQLDATFSTNASLEIFELDLSDPSLDMKSCATFSSSHRYHKLIWGPYKMDSKGDVSGVLIAGGENGNIILYDPSKIIAGD-KEVVIAQNDKHTGPVRALDVNIFQTNLVASGANESEIYIWDLNNFATPMTPGAKTQPPEDISCIAWNRQVQHILASASPSGRATVWDLRKNEPIIKVSDHSNRMHCSGLAWHPDVATQMVLASEDDRLPVIQMWDLRFASSPLRVLENHARGILAIAWSMADPELLLSCGKDAKILCSNPN----TGEVLYELPTNTQWCFDIQWCPRNPAVLSAASFDGRISVYSIMGGSTDGLRQKQVDKLSSSFG-NLDPFGTGQPLPPLQIPQQTAQHSIVLPLKKPPKWIRRPVGASFSFGGKLVTFENVRMPSHQGAEQQQQQHHVFISQVVTEKEFLSRSDQLQQAVQSQGFINYCQKKIDASQTEFEKNVWSFLKVNFEDDSRGKYLELLGYRKEDLGKKIALALN----------------------KVDGANVA--------LKDSDQVAQSDGEESPAAEEQ--LLGEHI----------KEEKEESEFLPSSGGTFNISVSGDIDGLITQALLTGNFESAVDLCLHDNRMADAIILAIAGGQELLARTQKKYFAKSQSKITRLITAVVMKNWKEIVESCDLKNWREALAAVLTYAKPDEFSALCDLLGTRLENEGDSLLQTQACLCYICAGNVEKLVACWTKAQDG--SHPLSLQDLIEKVVILRKAVQLTQAMDTSTVGVLLAAKMSQYANLLAAQGSIAAALAFLPDNTNQPNIMQLRDRLCRAQGEPVAGHESPKIPYEKQQL 809 HSP 2 Score: 122.094 bits (305), Expect = 1.306e-27 Identity = 54/122 (44.26%), Postives = 85/122 (69.67%), Query Frame = 1
Query: 3523 EELPAKAEIAKGPIPEAHLAIQQTFDAIVERCQGASNNPQHKRKLEDVRRKLEILYDLLRTQKLSPNVINGLHGMVQACQGQDYMAGIQVHTQMISTGNFSEISSFMPGLKTMMQIAKQLRV 3888
+ LP K +I K PIP+ HL ++ TF+ +++RC ++ +PQ KRKL+D ++LE LYD LR Q LSP + +GLH + ++ + ++Y G+ +HT ++ST NFSE S+FMP LK ++ A +L V
Sbjct: 1100 QSLPTK-KITKKPIPDEHLILKTTFEDLIQRCLSSATDPQTKRKLDDASKRLEFLYDKLREQTLSPTITSGLHNIARSIETRNYSEGLTMHTHIVSTSNFSETSAFMPVLKVVLTQANKLGV 1220 The following BLAST results are available for this feature:
BLAST of TCONS_00004274 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.