TCONS_00004276 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004276
Unique NameTCONS_00004276
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2432

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004276 ID=TCONS_00004276|Name=TCONS_00004276|organism=Clytia hemisphaerica|type=transcript|length=2432bp
TTGAATTACATTCAAATAAGAAAAGTTTCAGTTAGCAAAAGTCCAAAGAT
TTTTTAGATAAAGTATTGTCTGGTATAAATGTGATAACCTTACattaata
attattttcatatttactTTAGATGGATAAATAAGTTTCAGTAAAGGAAA
AATGAATAACAGAACTCAAGAGAAAACTCAACAGCATCTGATTACCAAAG
AAAGTCTACGCACATCAATATCAACCAGAGCCAAAACACCTTGTTGTGGA
TCCACTACCACCAAAGAAAATAATGATCAAATAGCTTCTTCCTCTACAGC
TGAAACAGAGCCAGCGACAGTTGTCAATTCAGCAACAAAACCAAGATGTC
GGAGACAGTGGGAACAGTGGAGTTGGGAAGAGAAAAAATGCTTTTACGAG
GGACTTGCAGAATATGGCAAAGATTACAGCAAAATCCAGTCTTTCATGAA
TAAAAAACTGAAACTGAAGAATTATAGTGATGgcaaaacaaaagaacaga
TCAGATTTTTTTACCATAGGACTTGGAGTAAAATTGCCAAGAAGTTGAAC
TTGCAGCCTGAGGAGGATAGTAAGAAAGCTTGTAGGAGAGAACTCCATTA
TTTGTTATGTCTTGGAGAACTTCGAAAGAAGCAATCTGCTGGCTTTGGTG
CAAAAGTGATGAAACAATTGGATGAACTTGCCACAAAAGGAATTACCTAT
GTCAGATTGAATGGTCGCAATTTACGGGTGAGACCACCCAATCGATATTT
GcgcaaaatttacaaagataTAAGTGATTCACCAGAAATACAGCTACCTA
AAACAGTAACGATAGAATTTCTACCAAACTCCAATATGGCTTTCAATTTT
GTACAGAAACATGCTTTCAACCCACGAATCAGGTTCACAGGTGTTAGTAT
TAATGCTagattttcagaagttttcgAAATGCTTAACAAGAGGTTTATGG
ACGTATATACAAACACAAACTTGAACTTACAAATTTATCCAATGCAATCA
gatacagatttttcaaaactactttcgaATGCTATTGAATTGTTAGCGAC
GTATGATAAAACACAAGTGACTGATATTGTTGTTGAAAAAGATAAACCCA
AGGATAATCTCCTTGTAGAGGACGTCACAATTGAAACCACGTGCACCGAT
AAAGAGCACCATCAAATGGAATTAGAGCAAGTTTTACCGCAAATATTTGC
AAAACATGGAGAGAAAGAAACACCAGATGGTGGTTCATCTGAAAAAGGCA
CCACATTAAAGAAGAGTAATTCTTTCCCAGGGTATTGGACCTATATTGAT
GCAAAGGAAATTTTCTTGAGGACGTTATTTGTTGTGTTTgaacaaaaacc
agtttttaaaTTCAAGTATGAGTGGAAACAGTCTGTCGATGAAAGTGTTG
ACAATTGCACCTTTAATAAAATGGCTTTacaaaatttagccaaattgtGT
GATGTGAAAAAGGAAGAGGACAGTGTCCCTCAAACTGATTCAAGAATGAG
TGTGATTAGCCCGCTTCTGCAAAGCCCAAACTTTTTGTATGCTCGAAAAC
CAGGCGAGGGGGCAATTTCTACAACTCATCAGGATGGACATGGTTTAATG
AATGGTACTTCTGGAAAATGGGTTTTGCCGAACAGACCACGCCCTGGAAG
AATCAACAAATCACGACAACAACTTGGTAACAATATTGCCGGTGTAACTA
GTCCTTTGTTAGCTCTCTCTAGTGGTAAGGCCCAATGTAAAACTGTGTTG
AATAATGCTGTAGCAGTTAACTTAATCCCACAACATCAACAGAATCTTCT
ACACATGGCACATTTGCAGCACAATTCCAACAAACTTGTCAACAATAGCG
CTTCAACTGTTGTTCATGGAGTTCAAGATGAAGTAATTGCTGAGGGATTT
CAAGAACATTATCAAGCACTGGCCAACATGATCAAATCTTCAGCTCTGGT
CAAAGGACAACGAAACAATGAGAACAATAACTTCCTCAAAACTCCTGTCA
AAGTGAATCCGATTCCATCTAACATACCCGCTTCTCCGAATCTGGAATGG
CTTAATGAGactgTCGACATTTCGATGACCAGCTTTTTAAATGTTTGTGA
CATGCAAGCCCTTCAAAATAAGagACAAGCAATGCAATCGAAAAATACGG
CATCATCACTACACAATAATCTGAAACCAAATGTCTCGCTTGATCCTGTC
TTACCGAAGTTCGAATCCAGTGAAATTTCTCAAGGACCTCTTTATGATTT
GGCATTCGAATTGTCGAACCATGCTACTAAATCAAAAGATCAATACACNC
CTTTATGATTTGGCATTTGAATTGTCAAACCATGCTACTAAATCAAAAGA
TCAATACACTGTCACGTGACACATTGTCAGTTTGTTTTGGTTGTCATGGT
AAGGACAAGGGATATTTAGCAGAACAACCAGT
Run BLAST on NCBI

protein sequence of TCONS_00004276-protein

>TCONS_00004276-protein ID=TCONS_00004276-protein|Name=TCONS_00004276-protein|organism=Clytia hemisphaerica|type=polypeptide|length=718bp
MNNRTQEKTQQHLITKESLRTSISTRAKTPCCGSTTTKENNDQIASSSTA
ETEPATVVNSATKPRCRRQWEQWSWEEKKCFYEGLAEYGKDYSKIQSFMN
KKLKLKNYSDGKTKEQIRFFYHRTWSKIAKKLNLQPEEDSKKACRRELHY
LLCLGELRKKQSAGFGAKVMKQLDELATKGITYVRLNGRNLRVRPPNRYL
RKIYKDISDSPEIQLPKTVTIEFLPNSNMAFNFVQKHAFNPRIRFTGVSI
NARFSEVFEMLNKRFMDVYTNTNLNLQIYPMQSDTDFSKLLSNAIELLAT
YDKTQVTDIVVEKDKPKDNLLVEDVTIETTCTDKEHHQMELEQVLPQIFA
KHGEKETPDGGSSEKGTTLKKSNSFPGYWTYIDAKEIFLRTLFVVFEQKP
VFKFKYEWKQSVDESVDNCTFNKMALQNLAKLCDVKKEEDSVPQTDSRMS
VISPLLQSPNFLYARKPGEGAISTTHQDGHGLMNGTSGKWVLPNRPRPGR
INKSRQQLGNNIAGVTSPLLALSSGKAQCKTVLNNAVAVNLIPQHQQNLL
HMAHLQHNSNKLVNNSASTVVHGVQDEVIAEGFQEHYQALANMIKSSALV
KGQRNNENNNFLKTPVKVNPIPSNIPASPNLEWLNETVDISMTSFLNVCD
MQALQNKRQAMQSKNTASSLHNNLKPNVSLDPVLPKFESSEISQGPLYDL
AFELSNHATKSKDQYXPL
Run BLAST on NCBI

transcript from alignment at sc0000041:291047..296803-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004276 ID=TCONS_00004276|Name=TCONS_00004276|organism=Clytia hemisphaerica|type=transcript|length=5757bp|location=Sequence derived from alignment at sc0000041:291047..296803- (Clytia hemisphaerica)
TTGAATTACATTCAAATAAGAAAAGTTTCAGTTAGCAAAAGTCCAAAGAT
TTTTTAGATAAAGTATTGTCTGGTATAAATGTGATAACCTTACATTAATA
ATTATTTTCATATTTACTTTAGATGGATAAATAAGTTTCAGTAAAGGAAA
AATGAATAACAGAACTCAAGAGAAAACTCAACAGCATCTGATTACCAAAG
AAAGTCTACGCACATCAATATCAACCAGAGCCAAAACACCTTGTTGTGGA
TCCACTACCACCAAAGAAAATAATGATCAAATAGGTGACTCAACTTTCAG
TCTTGTATTGATAACATGATAGATATTGTATAAACAAATAATTCACAATG
CAGGATTTTGCATTGCAAAGCAACCAAGATTCTGGCCTTGGGGCTGGAGC
TGCATAGCATTTTTGCTTAATTTCTAAAAACTTTCTATAAGCACCCCTAA
TCATATCATACCATACCATTCAACTGCTACTGTTAAAGTTTTTCCTTTAC
AAGATAATTAAAGAAATTAGCAACCTGGTTACTTACAAAGAAAAATGTAT
ATATTTGAAATGTTAGAACAGAAAAACTTTTTAGCTGAAAAATATTTTTC
CTTTAAAAATACAAGAATTTCTATAAAGTGTTATAGTAAGAGCTGGCAGG
AGATATTGAGTTTTATCACGTGCATCATCATTCGTTACTATGCACACCCC
TGGTTTTATTTTAAGAAAAATTAAAGGCACTGTAAAAAACAAATGATTGA
CATTTATTTTTGACAATCTCTGCAATGTGTACTGATATTGTATAAGCAAT
GCAAAATATTTCTTTTTTTCCATCAGAAATGTAGGCAATTCGTTTCTATT
CTTATTCAATACTTTTTTATAGCAAATCGTTCTAAATTAATGGTCTGTAT
TATAGAATTTAAGAGAGTTTGTTTTGATGCTTCTAAAACTGCAATTTTTA
TTATATGCAAGCTCGGTACTTTTTCAAAGCGATTAAGACCTCACTATTAA
TGACAATCTGGCTTTAAACTTATTTTTGTTCTCTTGCAGCTTCTTCCTCT
ACAGCTGAAACAGAGCCAGCGACAGTTGTCAATTCAGCAACAAAACCAAG
ATGTCGGAGACAGTGGGAACAGTGGAGTTGGGAAGAGAAAAAATGCTTTT
ACGAGGGACTTGCAGAATATGGCAAAGATTACAGCAAAATCCAGTCTTTC
ATGAATAAAAAACTGAAACTGAAGAATTATAGTGATGGCAAAACAAAAGA
ACAGATCAGATTTTTTTACCATAGGACTTGGAGTAAAATTGCCAAGAAGT
TGAACTTGCAGCCTGAGGAGGATAGTAAGAAAGCTTGTAGGAGAGAACTC
CATTATTTGTTATGTCTTGGAGAACTTCGAAAGAAGCAATCTGCTGGCTT
TGGTGCAAAAGTGATGAAACAATTGGATGAACTTGCCACAAAAGGAATTA
CCTATGTCAGATTGAATGGTCGCAATTTACGGGTGAGACCACCCAATCGA
TATTTGCGCAAAATTTACAAAGATATAAGTGATTCACCAGAAATACAGCT
ACCTAAAACAGTAACGATAGAATTTCTACCAAACTCCAATATGGCTTTCA
ATTTTGTACAGAAACATGCTTTCAACCCACGAATCAGGTTCACAGGTGTT
AGTATTAATGCTAGATTTTCAGAAGTTTTCGAAATGCTTAACAAGAGGTT
TATGGACGTATATACAAACACAAACTTGAACTTACAAATTTATCCAATGC
AATCAGATACAGATTTTTCAAAACTACTTTCGAATGCTATTGAATTGTTA
GCGACGTATGATAAAACACAAGTGACTGATATTGTTGTTGAAAAAGATAA
ACCCAAGGATAATCTCCTTGTAGAGGACGTCACAATTGAAACCACGTGCA
CCGATAAAGAGCACCATCAAATGGAATTAGAGCAAGTTTTACCGCAAATA
TTTGCAAAACATGGAGAGAAAGAAACACCAGATGGTGGTTCATCTGAAAA
AGGCACCACATTAAAGAAGAGTAATTCTTTCCCAGGGTATTGGACCTATA
TTGATGCAAAGGAAATTTTCTTGAGGACGTTATTTGTTGTGTTTGAACAA
AAACCAGTTTTTAAATTCAAGTATGAGTGGAAACAGTCTGTCGATGAAAG
TGTTGACAATTGCACCTTTAATAAAATGGCTTTACAAAATTTAGCCAAAT
TGTGTGATGTGAAAAAGGAAGAGGACAGTGTCCCTCAAACTGATTCAAGA
ATGAGTGTGATTAGCCCGCTTCTGCAAAGCCCAAACTTTTTGTATGCTCG
AAAACCAGGCGAGGGGGCAATTTCTACAACTCATCAGGATGGACATGGTT
TAATGAATGGTACTTCTGGAAAATGGGTTTTGCCGAACAGACCACGCCCT
GGAAGAATCAACAAATCACGACAACAACTTGGTAACAATATTGCCGGTGT
AACTAGTCCTTTGTTAGCTCTCTCTAGTGGTAAGGCCCAATGTAAAACTG
TGTTGAATAATGCTGTAGCAGTTAACTTAATCCCACAACATCAACAGAAT
CTTCTACACATGGCACATTTGCAGCACAATTCCAACAAACTTGTCAACAA
TAGCGCTTCAACTGTTGTTCATGGAGGTTTGTTTATTTTCTGTTTACTCC
AAAACAATTTTGTAGCCCATTGCGTTTTTTTGTCTTTTAATATTAATAAT
AAAGTGAGAATCCTATCCCAAAATTTTCTTGTAGATTTAAAAATTTCTGG
TATGTATCAAAGAAAAACAGGTTACCTAGCTAAACATTTGCATTGTTTGA
AATTGTTGTTTCAGTTCAAGATGAAGTAATTGCTGAGGGATTTCAAGAAC
ATTATCAAGCACTGGCCAACATGATCAAATCTTCAGCTCTGGTCAAAGGA
CAACGAAACAATGAGAACAATAACTTCCTCAAAACTCCTGTCAAAGTGAA
TCCGATTCCATCTAACATACCCGCTTCTCCGAATCTGGAATGGCTTAATG
AGGTTGGTTATTACTGGTTATTACCATATTTTAAAGTTATCAGGGTGTAA
AAAAACTCGTCCAGTTTTCTTAATTTGGGGCCTGGAATTCCCGAGTTATT
TTTCCTAGTTATTTTTTTCCGAGTTATTTTTCCGAGTTATTTTGCATGTG
ACGTCATAATTACAGTTTTGTGCCGTCATTATGACGCCATAACAAAAATT
ATAACTCAATTTTTTAGCTTTTTTTAACTTTTCAAGTTATTTGGTGTTTT
TAAACTCGGTTTTATTTCGTTCCTTTAACTTTTCGAATTATTTGATAAAT
TTTTAACTCGGTTTTTTATCGTGCCTTAAACTTTTCGAGTAATTTGATAA
ATTTTAATTCTGGTTTTTTTTTCATGCCTCAAAGTTATCAAGTTATTTAT
ATTATATTTTTATAGTAGATATTCGATTTATGGAAAATTCGACTTCTTTA
TTGGGTTTGTTACCTGAAGGGCAGATTTTTATTGAATAAATCAAAAAATA
ACCCGAGTTTAAAAATACCAAATAACTCGAAAAGTTAAAAGCTCAAAAAA
ATTCGAGTTATCATTTTTGCAGTGACGTCACAAAAACTGAAATTATGACG
TCACACACAAAATAACTNTAGCGCTTCAACTGTTGTTCATGGAGGTTTGT
TTATTTTCTGTTTACTCCAAAAAGATTTTGTAGCCCATTGCGTTTTTTTG
TCTTTTAATATTAATAATAAAGTGAGAATCCTATCCCAAAATTTTCTTGT
AGATTTAAAAATTTCTGGTATGTATCAAAGAAAAACAGGTTACCTAGCTA
AACATTTGCATTGTTTGAAATTGTTGTTTCAGTTCAAGATGAAGTAATTG
CTGAGGGATTTCAAGAACATTATCAAGCACTGGCCAACATGATCAAATCT
TCAGCTCTGGTCAAAGGACAACGAAACAATGAGAACAATAACTTCCTCAA
AACTCCTGTCAAAGTGAATCCGATTCCATCTAACATACCCGCTTCTCCGA
ATCTGGAATGGCTTAATGAGGTTGGTTATTACTGGTTATTACCATATTTT
AAAGTTATCAGGGTGTAAAAAAACTCGTCCAGTTTTCTTAATTTGGGGCC
TGGAATTCCCGAGTTATTTTTCCTAGTTATTTTTTTCCGAGTTATTTTTC
CGAGTTATTTTGCATGTGACGTCATAATTACAGTTTTGTGCCGTCATTAT
GACGCCATAACAAAAATTATAACTCAATTTTTTAGCTTTTTTTAACTTTT
CAAGTTATTTGGTGTTTTTAAACTCGGTTTTATTTCGTTCCTTTAACTTT
TCGAATTATTTGATAAATTTTTAACTCGGTTTTTTATCGTGCCTTAAACT
TTTCGAGTAATTTGATAAATTTTAATTCTGGTTTTTTTTTCGTGCCTCAA
AGTTATCAAGTTATTTATATTATATTTTTATAGTAGATATTCGATTTATG
GAAAATTCGACTTCTTTATTGGGTTTGTTACCTGAAGGGCAGATTTTTAT
TGAATAAATCAAAAAATAACCCGAGTTTAAAAATACCAAATAACTCGAAA
AGTTAAAAGCTCAAAAAAATTCGAGTTATCATTTTTGCAGTGACGTCACA
AAAACTGAAATTATGACGTCACACACAAAATAACTCGGGAATTCCAGGCC
GCTCTGAATTTTACTGAGCGTCTGAATTATTAGTTTTTATTGAACAAATA
TTCCTCTTACATGAAACATCTTCACTTGGAATGTATAGACCGTCACTTTA
ACTGCTAAAACATCTCTGGTGAAAAATTTTACGCAAACAGGAGTATTTAA
AAGGCCGCCCATGACAGATGACAGTACATACAAACATAAGATTATTTGAC
AACTTTTATTTATTTTTCAGACTGTCGACATTTCGATGACCAGCTTTTTA
AATGTTTGTAAGTTTCCTTTATTTCTTCTCTCATATTTTGGCTTTAATTT
TTTTTTCTCGGAAGTCTAACAAATGTATTTGAGAATATTTTCAATTAATA
ATATTCGTCATCTCAAAGAAGCTTGACATTTAAAGACACGTGTGCCCTTC
TTGCCTCTAAGTGACAGTTGTTTCTCATCTTTGATAAACGATTTTTAACT
TTTATCACTCCTTAATTTTCAGGTGACATGCAAGCCCTTCAAAATAAGGT
ATGAAGTTTTTCTAATTTTATGTCTTTTCTCAACGAGCTAGAATTTAACA
ATATCTGTCTTTCCGTCCGAAAACTTTGGGAAAGCCTGGAGACTTGAAAA
TGGTCAGTTGGTTGAAATTTGGCAAATTTCTTCCTTGTGTTAATACTAAG
AAGTGTTTTTTTTTTCATTTCTCAAATTTTTTTGTGTTTTGGGCCTTGGT
AGGAGTTTTTTACAAAACTGAGGATAAAACTTTTTATTCGACTGGATTTC
TAGAAGCCTCTGAAATGACTGTCTGAGGAACCTTTTTCTTTTTACAGAGA
CAAGCAATGCAATCGAAAAATACGGCATCATCACTACACAATAATCTGAA
ACCAAATGTCTCGCTTGATCCTGTCTTACCGAAGTTCGAATCCAGTGAAA
TTTCTCAAGGACCTCTTTATGATTTGGCATTCGAATTGTCGAACCATGCT
ACTAAATCAAAAGATCAATACACNCCTTTATGATTTGGCATTTGAATTGT
CAAACCATGCTACTAAATCAAAAGATCAATACACTGTCACGTGACACATT
GTCAGTTTGTTTTGGTTGTCATGGTAAGGACAAGGGATATTTAGCAGAAC
AACCAGT

Coding sequence (CDS) from alignment at sc0000041:291047..296803-

>TCONS_00004276 ID=TCONS_00004276|Name=TCONS_00004276|organism=Clytia hemisphaerica|type=CDS|length=2157bp|location=Sequence derived from alignment at sc0000041:291047..296803- (Clytia hemisphaerica)
ATGAATAACAGAACTCAAGAGAAAACTCAACAGCATCTGATTACCAAAGA
AAGTCTACGCACATCAATATCAACCAGAGCCAAAACACCTTGTTGTGGAT
CCACTACCACCAAAGAAAATAATGATCAAATAGCTTCTTCCTCTACAGCT
GAAACAGAGCCAGCGACAGTTGTCAATTCAGCAACAAAACCAAGATGTCG
GAGACAGTGGGAACAGTGGAGTTGGGAAGAGAAAAAATGCTTTTACGAGG
GACTTGCAGAATATGGCAAAGATTACAGCAAAATCCAGTCTTTCATGAAT
AAAAAACTGAAACTGAAGAATTATAGTGATGGCAAAACAAAAGAACAGAT
CAGATTTTTTTACCATAGGACTTGGAGTAAAATTGCCAAGAAGTTGAACT
TGCAGCCTGAGGAGGATAGTAAGAAAGCTTGTAGGAGAGAACTCCATTAT
TTGTTATGTCTTGGAGAACTTCGAAAGAAGCAATCTGCTGGCTTTGGTGC
AAAAGTGATGAAACAATTGGATGAACTTGCCACAAAAGGAATTACCTATG
TCAGATTGAATGGTCGCAATTTACGGGTGAGACCACCCAATCGATATTTG
CGCAAAATTTACAAAGATATAAGTGATTCACCAGAAATACAGCTACCTAA
AACAGTAACGATAGAATTTCTACCAAACTCCAATATGGCTTTCAATTTTG
TACAGAAACATGCTTTCAACCCACGAATCAGGTTCACAGGTGTTAGTATT
AATGCTAGATTTTCAGAAGTTTTCGAAATGCTTAACAAGAGGTTTATGGA
CGTATATACAAACACAAACTTGAACTTACAAATTTATCCAATGCAATCAG
ATACAGATTTTTCAAAACTACTTTCGAATGCTATTGAATTGTTAGCGACG
TATGATAAAACACAAGTGACTGATATTGTTGTTGAAAAAGATAAACCCAA
GGATAATCTCCTTGTAGAGGACGTCACAATTGAAACCACGTGCACCGATA
AAGAGCACCATCAAATGGAATTAGAGCAAGTTTTACCGCAAATATTTGCA
AAACATGGAGAGAAAGAAACACCAGATGGTGGTTCATCTGAAAAAGGCAC
CACATTAAAGAAGAGTAATTCTTTCCCAGGGTATTGGACCTATATTGATG
CAAAGGAAATTTTCTTGAGGACGTTATTTGTTGTGTTTGAACAAAAACCA
GTTTTTAAATTCAAGTATGAGTGGAAACAGTCTGTCGATGAAAGTGTTGA
CAATTGCACCTTTAATAAAATGGCTTTACAAAATTTAGCCAAATTGTGTG
ATGTGAAAAAGGAAGAGGACAGTGTCCCTCAAACTGATTCAAGAATGAGT
GTGATTAGCCCGCTTCTGCAAAGCCCAAACTTTTTGTATGCTCGAAAACC
AGGCGAGGGGGCAATTTCTACAACTCATCAGGATGGACATGGTTTAATGA
ATGGTACTTCTGGAAAATGGGTTTTGCCGAACAGACCACGCCCTGGAAGA
ATCAACAAATCACGACAACAACTTGGTAACAATATTGCCGGTGTAACTAG
TCCTTTGTTAGCTCTCTCTAGTGGTAAGGCCCAATGTAAAACTGTGTTGA
ATAATGCTGTAGCAGTTAACTTAATCCCACAACATCAACAGAATCTTCTA
CACATGGCACATTTGCAGCACAATTCCAACAAACTTGTCAACAATAGCGC
TTCAACTGTTGTTCATGGAGTTCAAGATGAAGTAATTGCTGAGGGATTTC
AAGAACATTATCAAGCACTGGCCAACATGATCAAATCTTCAGCTCTGGTC
AAAGGACAACGAAACAATGAGAACAATAACTTCCTCAAAACTCCTGTCAA
AGTGAATCCGATTCCATCTAACATACCCGCTTCTCCGAATCTGGAATGGC
TTAATGAGACTGTCGACATTTCGATGACCAGCTTTTTAAATGTTTGTGAC
ATGCAAGCCCTTCAAAATAAGAGACAAGCAATGCAATCGAAAAATACGGC
ATCATCACTACACAATAATCTGAAACCAAATGTCTCGCTTGATCCTGTCT
TACCGAAGTTCGAATCCAGTGAAATTTCTCAAGGACCTCTTTATGATTTG
GCATTCGAATTGTCGAACCATGCTACTAAATCAAAAGATCAATACACNCC
TTTATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002375XLOC_002375Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004276-proteinTCONS_00004276-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004276-exon-sc0000041-1575043694:296520..296803TCONS_00004276-exon-sc0000041-1575043694:296520..296803Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1575043694:294178..295764TCONS_00004276-exon-sc0000041-1575043694:294178..295764Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1575043694:292784..292971TCONS_00004276-exon-sc0000041-1575043694:292784..292971Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1575043694:291897..291933TCONS_00004276-exon-sc0000041-1575043694:291897..291933Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1575043694:291656..291681TCONS_00004276-exon-sc0000041-1575043694:291656..291681Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1575043694:291047..291356TCONS_00004276-exon-sc0000041-1575043694:291047..291356Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:296520..296803TCONS_00004276-exon-sc0000041-1510915933:296520..296803Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:294178..295764TCONS_00004276-exon-sc0000041-1510915933:294178..295764Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:292784..292971TCONS_00004276-exon-sc0000041-1510915933:292784..292971Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:291897..291933TCONS_00004276-exon-sc0000041-1510915933:291897..291933Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:291656..291681TCONS_00004276-exon-sc0000041-1510915933:291656..291681Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1510915933:291047..291356TCONS_00004276-exon-sc0000041-1510915933:291047..291356Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:296520..296803TCONS_00004276-exon-sc0000041-1491911889:296520..296803Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:294178..295764TCONS_00004276-exon-sc0000041-1491911889:294178..295764Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:292784..292971TCONS_00004276-exon-sc0000041-1491911889:292784..292971Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:291897..291933TCONS_00004276-exon-sc0000041-1491911889:291897..291933Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:291656..291681TCONS_00004276-exon-sc0000041-1491911889:291656..291681Clytia hemisphaericaexon
TCONS_00004276-exon-sc0000041-1491911889:291047..291356TCONS_00004276-exon-sc0000041-1491911889:291047..291356Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:291047..296803 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.22525	3.93141	0.912948	0	4.89311	5.58509	4.14657	3.88197	0.679464	0	2.04226	0.2685	0.536253	0.556904	0.915702	0.245672	0.605296	0.310204	0	0	0.779589	0.570384	7.85827	2.52152	5.62705	6.53349	0	0.589971	1.78989	0.911806
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001005SANT/Myb
IPR009057Homeobox-like
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003677 DNA binding
Blast
[Close]
BLAST of TCONS_00004276 vs. Swiss-Prot (Human)
Match: CRML (Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=1 SV=3)

HSP 1 Score: 136.346 bits (342), Expect = 1.267e-32
Identity = 85/210 (40.48%), Postives = 117/210 (55.71%), Query Frame = 2 
Query:  344 RCRRQWEQWSWEEKKCFYEGLAEYGKDYSKIQSFMNKKLKLKN--YSDGKTKEQIRFFYHRTWSKIAKKLNLQPE-EDSKKACRRELHYLLCLGELRKKQSAGFGAKVMKQLDELATKGITYVRLNGRNLRVRPPN-RYLRKI-----YKDISDSPEIQLPKTVTIEFLPNSNMAFNFVQKHAFNPRIRFTGVSINARFSEVFEMLNKRF 946
            + RRQWE WS E+K  F+EGL E+GKD+  IQ+ +  K K K    S  K KEQ+R FY+RTW KI K ++         K   +EL+ L+C GELRKK       K   +L+EL   G T VR  GRNLR++ P  R L+K+       D  D   ++LP  V IE  P +N A+  VQ  A NPR+R   V ++ + S + E L +++
Sbjct:  158 KVRRQWESWSTEDKNTFFEGLYEHGKDFEAIQNNIALKYKKKGKPASMVKNKEQVRHFYYRTWHKITKYIDFDHVFSRGLKKSSQELYGLICYGELRKKIGGCMDDKNATKLNELIQVGATTVRYKGRNLRIKAPMCRALKKLCDPDGLSDEEDQKPVRLPLKVPIELQPRNNHAWARVQSLAQNPRLRMI-VELHRKVSSLIEFLKQKW 366
The following BLAST results are available for this feature:
BLAST of TCONS_00004276 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CRML1.267e-3240.48Protein cramped-like OS=Homo sapiens GN=CRAMP1 PE=... [more]
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