TCONS_00004294 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004294
Unique NameTCONS_00004294
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length399

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=transcript|length=399bp
CGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGGTCTTTTGGTG
CATCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATCCAGTGGA
CGAAAATGTGTTCGATCGCATTCAACTCATCAATGGAGACGATGATCATT
TTGAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGCTGAGT
CAGCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTGTTATG
GCCGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCCATATGAAA
AACAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCGA
TTCGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGAT
Run BLAST on NCBI

protein sequence of TCONS_00004294-protein

>TCONS_00004294-protein ID=TCONS_00004294-protein|Name=TCONS_00004294-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
EDVNHFYSPHFQGLLVHPIKGSVENELSKDPVDENVFDRIQLINGDDDHF
EGDIVMSTEDVEKLLSQRERKRREVVSSTLLLWPNGVVPYNFSNGFPYEK
QVKEAMREVERLTCIRFVPRTTQRGYVEFIRG
Run BLAST on NCBI

transcript from alignment at sc0000041:417717..418742-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=transcript|length=1026bp|location=Sequence derived from alignment at sc0000041:417717..418742- (Clytia hemisphaerica)
CGGAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGGTGCCTAAACA
TTCATACAAATTCATATAAATAGGGGTGAATTAGGAAAGGGGAAATCAAA
TCAAACAAACCAACTCATAGGAGTAGAAAAGCATTGAAAAACTAGCAAAG
ATTTTGCGAAGAGAAACATAATGGAAATATTCTTTTTTCTTCTTCCACTA
ATGATGGGTAAACAAAATTTATAACAACTTACTCTTCTTTGATGTTGACT
TTAATATTTGAGTGATTCGAATAATCTTACCTTCGCCTTCATACCGAAAC
TACGTTTTCAAAGAATGTTTAAAATCTCTCTGACAACTCCTTTCACTGAC
ATTTCAGGTCTTTTGGTGCATCCAATCAAAGGAAGTGTTGAAAATGAATT
ATCCAAGGATCCAGTGGACGAAAATGTGTTCGATCGCATTCAACTCATCA
ATGGAGACGATGGTAAGAAAAATCTCATTTGAAAAATCTTGACTTTGATC
TTTAGACCATTGTACTGAAAATGCGAATTTCAGGATGCAAATCCTCTGTT
TCCTTTTCATGGTTAAAAACAAACAGTTCCTCTCAAAAAGATTTCAAATC
TTTCATTTAGATCATTTTGAAGGCGATATTGTCATGTCAACAGAAGATGT
CGAAAAATTGCTGAGTCAGCGAGAACGAAAACGACGAGAGGTTGTTTCGA
GCACATTGTTGTTATGGCCGAACGGAGTTGTTCCCTATAATTTTAGCAAC
GGATTTCGTAAGTACATTTTGCAAATTTAAACAAAATCTGAAAAAAACAT
ATTGACGCTATTTTCTGTATGGACCAATCTTGTCCCAAAATCATTTAACC
AAAACTTTTCGTTTCGTTTGAACACCAAAATAATCTTGTAGATTGAATCT
CGATATCTTTTATTTCAGCATATGAAAAACAAGTGAAAGAAGCGATGCGA
GAAGTGGAAAGGTTGACTTGCATCCGATTCGTACCCAGGACTACACAAAG
AGGATATGTCGAGTTCATCCGAGGAT

Coding sequence (CDS) from alignment at sc0000041:417717..418742-

>TCONS_00004294 ID=TCONS_00004294|Name=TCONS_00004294|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at sc0000041:417717..418742- (Clytia hemisphaerica)
GAAGACGTAAATCATTTTTATAGTCCACATTTTCAAGGTCTTTTGGTGCA
TCCAATCAAAGGAAGTGTTGAAAATGAATTATCCAAGGATCCAGTGGACG
AAAATGTGTTCGATCGCATTCAACTCATCAATGGAGACGATGATCATTTT
GAAGGCGATATTGTCATGTCAACAGAAGATGTCGAAAAATTGCTGAGTCA
GCGAGAACGAAAACGACGAGAGGTTGTTTCGAGCACATTGTTGTTATGGC
CGAACGGAGTTGTTCCCTATAATTTTAGCAACGGATTTCCATATGAAAAA
CAAGTGAAAGAAGCGATGCGAGAAGTGGAAAGGTTGACTTGCATCCGATT
CGTACCCAGGACTACACAAAGAGGATATGTCGAGTTCATCCGAGGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002384XLOC_002384Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004294-exon-sc0000041-1575043694:418704..418742TCONS_00004294-exon-sc0000041-1575043694:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:418281..418385TCONS_00004294-exon-sc0000041-1575043694:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:417986..418132TCONS_00004294-exon-sc0000041-1575043694:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1575043694:417717..417824TCONS_00004294-exon-sc0000041-1575043694:417717..417824Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:418704..418742TCONS_00004294-exon-sc0000041-1510915933:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:418281..418385TCONS_00004294-exon-sc0000041-1510915933:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:417986..418132TCONS_00004294-exon-sc0000041-1510915933:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1510915933:417717..417824TCONS_00004294-exon-sc0000041-1510915933:417717..417824Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:418704..418742TCONS_00004294-exon-sc0000041-1491911889:418704..418742Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:418281..418385TCONS_00004294-exon-sc0000041-1491911889:418281..418385Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:417986..418132TCONS_00004294-exon-sc0000041-1491911889:417986..418132Clytia hemisphaericaexon
TCONS_00004294-exon-sc0000041-1491911889:417717..417824TCONS_00004294-exon-sc0000041-1491911889:417717..417824Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004294-proteinTCONS_00004294-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:417717..418742 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.556023	0.650099	0.374069	0	1.96699	1.34808	1.66166	2.31478	1.30584	0.391644	2.16934	1.15845	3.4905	1.97972	3.17591	4.03085	0.725174	4.88172	0	0.623125	0	0	0	0.897052	2.99799	1.24616	4.24465e-05	0	0.4145	0.7315
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001506Peptidase_M12A
IPR024079MetalloPept_cat_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004222metalloendopeptidase activity
GO:0008237metallopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0006508proteolysis
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006508 proteolysis
molecular_function GO:0004222 metalloendopeptidase activity
molecular_function GO:0008237 metallopeptidase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004294 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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