TCONS_00004312 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004312
Unique NameTCONS_00004312
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4357

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004312 ID=TCONS_00004312|Name=TCONS_00004312|organism=Clytia hemisphaerica|type=transcript|length=4357bp
gagaaaaaCAGATCGCAAAATATTATAAAACCAACAATTATCCATCAGAG
AAAAAAAGACTACACAAAACTCTTATGGTCACACAAGCCAAGTCAAAAAA
TATGTATTTGGTATTTTGTATCCTTGCTTTGTTCGTGTGTCACTCATTAC
AACAATGTACGAATTCCGATTTTTacgaaaaacaaatcaaaaaccaTAAC
ATCGAAACGAGGCTAACATACCTCGAAAATGGAAACTACACAATACAAGC
TTTACTTGTGTTTTCCGAAATGAACACCAAATGCGGACAGATTTCCAAAT
CGGGATTAATTTCCATGTTTTCAATCCGATATGCGATCGGGAAATTTAAT
GATGATCCGTTTTATGGGAGTAGAGCCCGAATCGGGTTACAACTGGATGA
TAGTTGTGGGCAATTACCAACAACCATGGCACGTGGAATCGAGGTGGTCT
CATTTCATCGGAATAATTCCGTTTGTCGATCGGATTTTATCCGTTGTAAC
AAGGATGACGTGAAAAATGTCGACATCAAAGAAGCGTCAGCCCTCATTGG
CACGTTAATGAGTTTTACGACAATTCCTTTGTCCAGTTTAATGTCCCTGT
ACGATATACCACAAGTCAGTCCTTCAGCTTCCAGTCGTCTCCTCAGCAAG
AAAGAACTCTACAAATCTTTTTTTCGGACAATTTCTTCGGACACTAATCA
AATTAAAGCCATGTTGGATATCTTTAAAAAGTTCAAATGGAATTATATTT
TCGCCGTGGGCTCTGATGACGATTATGGAAAACTGGGCGTGTCCGATCTC
AAACAATTGACCAGCAGTTTAGAAGGGAAAGAGAAGATTTGTATTTACAA
AGACGAATACATACCGTACCAGTCCGAGAAAACAGAATCGAAAATTAAAG
AGGTTGTCAGCAAAATCAAAGAAGGGAAAGATGCTAAGGTTGTCGTCTTA
TTTCTGTACGTTGAGAGTATAGGGGAACGCATCATAGCTGAAGCTCAACG
TCAAGGAGTGGAACGTATTTGGTTAACCAGTGAAGCATGGAATCCTGCTG
CTGCTACCATCTTCTCAAAGAAACTCAACCTCCAAAATCAAACTCATGGT
ATCCTGTCTGTATCTCTACAAAGTCACAAGTTaccaaaacttcaaaatta
tatcaaaaaagAAGTCCTCACAAATTACAAATGCAATAAGTGGCTTCAAC
AATACATTCAGAATATGTGGGGATGTCAAATTGATACCCTGAGACAATCT
GACAAAGCTTTCACTTGCCAAGGATCTAGCGAGGTGGTCAATTCCTCCAT
TGTGATTAGAGAGTTGGTCACCGAGCTGCCAGGAGGAACAGATCGTTTAA
TAGATGCTGGATACGCTCTCGGTTTAGCTATGAATACCGTACTTAATCAA
ACTTGTCCGCGCGGTGGGTCCAAGTGTCAAATTCCTAAGCTAAGACCAGC
CGATATTACTGACGCAATGGAGAAGATTTCTTTCATAAATGACCAGGGAA
AGAATATCACATTTAACAAAGACGGGGAACCAACCACTGCTTTCTATACA
ATCGAGAACCTAGTCCATGATGGGGAGAAGATGGTGTACCAACCTATCGG
AAATTGGTCCGAGAAAAATCTTCAGTTGGATGTGGACGCTATACAATGGC
CTTATTGGTTTGAAAAGAATACGACTGTAGGTGAGATTGACTTCCCATCG
TCTCGTTGTAGTAGAGAATGTCAACCAGGCGAGTTTGTAGTTGGGCGTAC
AGGTTGCTGCTGGAATTGCCACAAGTGTTTAAGCTACAAGAACTATACCG
ACACGCCAATGCTTGATAAATGCAAGACTTGCCAAAAGTATTACCACACC
TTAGATAACAAGGTATGTATTCCAACTGAAATAAAATGGTTGGAGATCAA
CGACCCGGCTggcatgtctattgtcattatCAGTGCGATTGGCTTCCTTG
CTACATTTGCGACTACCATCTTCATAGCTAAGTATAACGCCTTAGTTACA
CTGTACGATTCATCTAAACACATGTTATCGTTTGTCTGTGTTTTGTTGTT
CCTGACCTTCATCTACGGGCCGTTGCACATTTTGGAGCCGAATGACGCCC
TGTGTAAATTCCGGAATGGATATTTCTTCATTCTCCTCATGATGTATTGT
GCGTTCGTGCTTGTACAAACACAAGCTATGACCAGTTATCTGAAAGGGCA
CGCGGACCGTACGTTCGGTGGGATTCTGTTAGCCACACAATTGCTGGTGC
TTCTAATGTTCTTTCTACTTGAACTGGTATCGGTCATTGCATGGTTATAC
GTGGACGGTTATCAATTAAAGGAGGACCGTGACACAACATCTCAAGTCAT
CTTAAAGCAATGTGAAGTGGAATTTACAGCCGCTCGCCTCGTTTCCACGT
TCATCCCCTGTATCATCTTGATCATCGCTACTTTCTGCGCTTTCCGTGAG
CGGAATGCAGATCACTCATTCTATGAGCCGAAGTTCCTCAGTTTCTCATG
CATCGCTTTGTGTATCATAATCGTGGCTTTTCTACCGACCTTCAGATATG
TTGTCGGTATTTATAAAGCTATAGTCCTGGCTTACACTATGAATGTGTTT
GGATTTACGTTCCTAGTGTGTCTCATCCTACCGAAAGTGTACGTCGGAGT
GATACGCAAGCGCCGCGGAAAGGATGAATACCCACTAAAGAAAAGCGCTA
CCAAGCGcaagaagaataaaaaagaagacaagAAGAAACAAAACGACACC
CAGTTGGAAACAACAAGCGTCATTGAAACCACCATGACCCGACCACTGGG
AACGGTCGATAATTCGACCTCCGAAGTATCGGACACGGCCGATATCCGAC
TTGATGAGAAGCAGCTCAACGGAAAGCAACACAGTGAGCAACTCACTTTC
AGTAATGGTGGAAATTCTCAGGGAGAAAAATGCTAATAAAGGAGAGACTC
TTTGTATTTAAATGGTAGCAGATATTAACGGATAGATGGAGGATGACTGT
CATATTCGAATCATTTTCATAATTGGTCACTGTACAAATTAGCAAAAGTT
TATGTAATTGCATTTTTGAGGACGCCGGAGTGACTGAAGCGTTTTTGAAT
AACTCGCAAAATAGTGGATGGTAAAAATGTTGATTTATCATCCTTCCTAG
TCAGttaggatctagacaaatcatTAGCTAACCATCAATGTCGCTGAAAT
ACACAGATACATGAACTCGCTATTCTCCCTCAATGGGGAACTGAATCCGA
TGACAAATAACTTTGGATGAATGAAGTAGGGCTAGAAACGAATCTCCCAG
TAGGATTTGGAGCCGCcaaatcctacctaagttgcgcggccttgaacGGC
CCGGgtggtttttatacaaattcctgcttgaaagtaaaatttgccGCTAT
ATATCAATAAATATACCACTCGTAAACAAAGAAACCGctaaattcaatcc
gtcgtTAAAAATAACGGCGTATAtattaaggcttcactttttcttacctG
AGAATGGttaaagattcgcttctagcccttcgggattttACTTCATTGCT
TTGAGTTATATACCTAGTGGAGATCTTTGGTCATTCCTTGAAAGAACATA
AATCACATAATCGCTTAGATGATTACCTGGTGTAGTCTAGCTTCTTAACA
CTTTTTAATGGCATACTTTATCAGGATATTTTGTTTCTTGACTAGATAGA
GGAATTTATTATCATAACATACTTTTACAGACGAGCTTTCCTTGGAGCTT
CTTGAAACTCGATTTCATTGATGAGAAGGAATCTTAAGGGATctatattg
aaatattttcgtAGAATTTTATTATAAAGGTTGGTTGAGGAGTATATTTA
CTATATTTtgatctaatttttttatttaatttatttaaaaactcaCTCCT
ATATATACACACTTGGTTGTCAAAtggtttttatattttacagtCTTGAT
GAAGTTTAAGGATGTCTCAAGGGAAATTTCTGCCGAATATATGGGATTGA
AATTTCGTCACTATCATTTTATCACGCACATTCGGCTTTGGCAAAAATAG
ACATTCTGACCGGGAATTCCACTACGGCTTAACCCTTTCCTTGCCGCTGA
CGGCATATGTCGACAATAGCGAAGTAAATACATATCACTTATGTTTCtga
tattttttagaaaataaagcTAAATGAGATGGTAAACTCTGTGGTCGCTC
ATGTCGGTATATAccgacatctggcaaataggtcgaaccctTAAAAAGTA
CAAACGGATATTACTGCTTAACTAGAAAATACACAGTTTTAAGATTGAGA
ATCTTCGCTCATGTGTAATATAATATTTTTGGTGCAAAAATCCAAACTTC
TTCAATT
Run BLAST on NCBI

protein sequence of TCONS_00004312-protein

>TCONS_00004312-protein ID=TCONS_00004312-protein|Name=TCONS_00004312-protein|organism=Clytia hemisphaerica|type=polypeptide|length=977bp
EKQIAKYYKTNNYPSEKKRLHKTLMVTQAKSKNMYLVFCILALFVCHSLQ
QCTNSDFYEKQIKNHNIETRLTYLENGNYTIQALLVFSEMNTKCGQISKS
GLISMFSIRYAIGKFNDDPFYGSRARIGLQLDDSCGQLPTTMARGIEVVS
FHRNNSVCRSDFIRCNKDDVKNVDIKEASALIGTLMSFTTIPLSSLMSLY
DIPQVSPSASSRLLSKKELYKSFFRTISSDTNQIKAMLDIFKKFKWNYIF
AVGSDDDYGKLGVSDLKQLTSSLEGKEKICIYKDEYIPYQSEKTESKIKE
VVSKIKEGKDAKVVVLFLYVESIGERIIAEAQRQGVERIWLTSEAWNPAA
ATIFSKKLNLQNQTHGILSVSLQSHKLPKLQNYIKKEVLTNYKCNKWLQQ
YIQNMWGCQIDTLRQSDKAFTCQGSSEVVNSSIVIRELVTELPGGTDRLI
DAGYALGLAMNTVLNQTCPRGGSKCQIPKLRPADITDAMEKISFINDQGK
NITFNKDGEPTTAFYTIENLVHDGEKMVYQPIGNWSEKNLQLDVDAIQWP
YWFEKNTTVGEIDFPSSRCSRECQPGEFVVGRTGCCWNCHKCLSYKNYTD
TPMLDKCKTCQKYYHTLDNKVCIPTEIKWLEINDPAGMSIVIISAIGFLA
TFATTIFIAKYNALVTLYDSSKHMLSFVCVLLFLTFIYGPLHILEPNDAL
CKFRNGYFFILLMMYCAFVLVQTQAMTSYLKGHADRTFGGILLATQLLVL
LMFFLLELVSVIAWLYVDGYQLKEDRDTTSQVILKQCEVEFTAARLVSTF
IPCIILIIATFCAFRERNADHSFYEPKFLSFSCIALCIIIVAFLPTFRYV
VGIYKAIVLAYTMNVFGFTFLVCLILPKVYVGVIRKRRGKDEYPLKKSAT
KRKKNKKEDKKKQNDTQLETTSVIETTMTRPLGTVDNSTSEVSDTADIRL
DEKQLNGKQHSEQLTFSNGGNSQGEKC
Run BLAST on NCBI

transcript from alignment at sc0000041:827442..834389-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004312 ID=TCONS_00004312|Name=TCONS_00004312|organism=Clytia hemisphaerica|type=transcript|length=6948bp|location=Sequence derived from alignment at sc0000041:827442..834389- (Clytia hemisphaerica)
GAGAAAAACAGATCGCAAAATATTATAAAACCAACAATTATCCATCAGAG
AAAAAAAGACTACACAAAACTCTTATGGTCACACAAGCCAAGTCAAAAAA
TATGTATTTGGTATTTTGTATCCTTGCTTTGTTCGTGTGTCACTCATTAC
AACAATGTACGAATTCCGATTTTTACGAAAAACAAATCAAAAACCATAAC
ATCGAAACGAGGCTAACATACCTCGAAAATGGAAACTACACAATACAAGC
TTTACTTGTGTTTTCCGAAATGAACACCAAATGCGGACAGATTTCCAAAT
CGGGATTAATTTCCATGTTTTCAATCCGATATGCGATCGGGAAATTTAAT
GATGATCCGTTTTATGGGAGTAGAGCCCGAATCGGGTTACAACTGGATGA
TAGTTGTGGGCAATTACCAACAACCATGGCACGTGGAATCGAGGTGGTCT
CATTTCATCGGAATAATTCCGTTTGTCGATCGGATTTTATCCGTTGTAAC
AAGGATGACGTGAAAAATGTCGACATCAAAGAAGCGTCAGCCCTCATTGG
CACGTTAATGAGTTTTACGACAATTCCTTTGTCCAGTTTAATGTCCCTGT
ACGATATACCACAAGTCAGTCCTTCAGCTTCCAGTCGTCTCCTCAGCAAG
AAAGAACTCTACAAATCTTTTTTTCGGACAATTTCTTCGGACACTAATCA
AATTAAAGCCATGTTGGATATCTTTAAAAAGTAAGTTTCTTTATTTTCAT
CTCGTTTGATTTTCGCTTTATATAAAGCAGATCATAACATAAGCGATCCT
CAATTGCCATTTATGTAAGGTTTAAAGGTTTTGTTTTTAAATAAGAGTGA
TATCGTTTGCTTACTCATCAATTTTGATTCATAAGCTTTTTCACATTGGA
TTGACACGGATGTGGAGCAAGATTGGTCAGAAAGAGGAAAAGAAAAACAT
TTTTTGCTTCTATCAGCATAATATANAGCAAGATTGGTCAGAAAGGGGAA
AAGATTTTTTTGCTTATATATGAAATATGTCCTGATATGAAATATGTGTC
TGATATGAAACAGGGACACTTATGTAAAAATAAAACCTTTAATTCCTTTG
AAAATGGAAATCTCTTATCTCTTACCGAGTTTTGAAATCTCCCTCACGTT
TTCCTTCAAACCTTTTTCAACAATGCAGGTTCAAATGGAATTATATTTTC
GCCGTGGGCTCTGATGACGATTATGGAAAACTGGGCGTGTCCGATCTCAA
ACAATTGACCAGCAGTTTAGAAGGGAAAGAGAAGATTTGTATTTACAAAG
ACGAATACATACCGTACCAGTCCGAGAAAACAGAATCGAAAATTAAAGAG
GTTGTCAGCAAAATCAAAGAAGGGAAAGATGCTAAGGTATGAATGTCATG
CAACTTTGTTTCAACGTTCATTTTCAACGCTATATGAACGTCAATTTGTA
GCATGTAATATTTTTTCTCTTCGGTTGCTACTGCAGTCTGGGTCTTCTAT
GTTTTATCTACAAAACTTTTAGAATCAAAGGTCAGACCAGAGCTCGTAGG
TTCGGTGCCCAAATACTATACTCGTCACCCACAGTTCTAATTATTAGGAT
TAGACAATTGCAATGATTTTCTAATCCTGGCCGAAATAATTCATTTTCTT
ATACATGATATTAGCTGTTTTACTGAAAATGCCGAGCATAGTTGGAATCA
AAGTTAGCGATGCGTTCTGAAGCTTTACTGATGGCCAATTCGATACTTTG
ATAATAATATAAGAAGTTTGGATAGACAACCTGAGTTTACAACAGCACGA
TTGGGCTGTCGTCTCATTCCTGTATGTTGAGAGTATAGGGGAACGCACTA
GGCTTGAATAACTGATAAATTTCTTGAAACCCTAGCATGCTGTATACCGA
GTTTATCGTTCGACATCTGCAATTTGAGGTGCAATTACGGTGATCGGAAC
CTTCACACAACCAATTGGCTAGCATAGCATGCAATTTGTATATTTTGCCT
GCATTTTTATACTCTAAAAACTCTTTTATTCCTGAACGTTGAAAGTATAG
GGGAACGCACTAGGCTCGAATAACTGATAAGCTGTATTTTTCATACTATA
AAAATTATGATAGGCATGGCAAAAAGTCGGCCGTCTAAACTAGTATTTCG
GATAATAACCTGAGTTTACAACAACACGATCTTCTTCTGTTTTATAGGTT
GTCGTCTTATTTCTGTACGTTGAGAGTATAGGGGAACGCATCATAGCTGA
AGCTCAACGTCAAGGAGTGGAACGTATTTGGTTAACCAGTGAAGCATGGA
ATCCTGCTGCTGCTACCATCTTCTCAAAGAAACTCAACCTCCAAAATCAA
ACTCATGGTTAGTTGAATTTTGACAAAAAACATGATTTTCATTACGTAAT
GTTTTGTACGGAAGCACCTAAAATAACACGGGCGTTTGCCACTAGTTTAA
TTGTTTGAATGCAAAATTAGTGCCAGACACCTAGTCTTTTTAGGTGGCTT
CCGCTATGAAAAACATTGTTTCAATAATGTCACATCGATAAAGACCAAAG
AAAAATTCTTTTTACGAGGAACTATAAAATCTGGACGTGTTTTGAGTTGG
GTAGATTTTTTGATTTCTCATCAGAAACAAAAATTTCACGTAAATAAATT
TGATAAGCTCTCAAAACATTCCTTCACTTTATTCTTAATCTTAGGTATCC
TGTCTGTATCTCTACAAAGTCACAAGTTACCAAAACTTCAAAATTATATC
AAAAAAGAAGTCCTCACAAATTACAAATGCAATAAGTGGCTTCAACAATA
CATTCAGAATATGTGGGGATGTCAAATTGATACCCTGAGACAATCTGACA
AAGCTTTCACTTGCCAAGGATCTAGCGAGGTGGTCAATTCCTCCATTGTG
ATTAGAGAGTTGGTCACCGAGCTGCCAGGAGGAACAGATCGTTTAATAGA
TGCTGGATACGCTCTCGGTTTAGCTATGAATACCGTACTTAATCAAACTT
GTCCGCGCGGTGGGTCCAAGTGTCAAATTCCTAAGCTAAGACCAGCCGAT
ATTACTGACGCAATGGAGAAGATTTCTTTCATAAATGACCAGGTTAGATT
TTAATATTGACATGTCCCGTCCGAGTAATGATCTATTATATAGTGTGCCC
GAAAAAAGTGAAACAGACTTGATATTATTTTTATTTCGCTCAGTCAATAA
CTAAATAAATTTATTTCAAAATTTCGCTGTTAAAAAAAGTACATTACTTC
AAGTTCATGTATTACGGCAAAATGAAACAGACATTTGGTCATTCTTTGTC
TATGAGAATGCAAACCCCGTTTTCTAACGCTTTAAGGGTTTAAGAGTTGA
TGGTATAAATTATGAAGATCATTCTTTGGATGAAATTTAATTTAAAACTG
TTTCTTTAGGTTGAACGCTTATATATTCACTTCCGTTAACAACGTACGAA
GTCTGGGGGGTTTAACGGTTGATGGTATGAATTATAAAGATCATTCTTTA
GATGAAATTTAATTTAAAACAGTTTCTTTAGGTTTTCAAACGCTTATATT
TACTTCTGTTAACAACGTACGAACNTGTTTTTTAGGTTGAACGCTTATAT
ATTCACTTCCGTTAACAACGTACGAAGTCTGGGGGGTTTAACGGTTGATG
GTATGAATTATAAAGATCATTCTTTAGATGAAATTTAATTTAAAACAGTT
TCTTTAGGTTTTCAAACGCTTATATTTACTTCTGTTAACAACGTACGAAC
TCTGGGAAAAATATTTGACGATACCTTTCTTACGGTATTGCCCTCATAAA
AAACAATGAATATGGGTTTAATCATATATTTATAAAGGGCTAGATGACGT
GCTTTAAGCCATCGCGGGCAAGAAAAACTGATTATTGCAAAAAATATTGT
TGCTATTGTTTTCGAAAACCCGCGTAGCTTTTGATTGGTCAAAAGCTGAA
ATTCTATTGTTATGTCGCGTGACCTACATCTAGCCTTTCGGGCTTTATAA
ATCTATGGGTTTAATGGTATATTCATAATTTCCTTATTTTGAGTAATGAT
CAGATTATTAAAAAACTATTGTTTTCAATGTTCACAGGGAAAGAATATCA
CATTTAACAAAGACGGGGAACCAACCACTGCTTTCTATACAATCGAGAAC
CTAGTCCATGATGGGGAGAAGATGGTGTACCAACCTATCGGAAATTGGTC
CGAGAAAAATCTTCAGTTGGATGTGGACGCTATACAATGGCCTTATTGGT
TTGAAAAGAATACGACTGTAGGTGAGATTGACTTCCCATCGTCTCGTTGT
AGTAGAGAATGTCAACCAGGCGAGTTTGTAGTTGGGCGTACAGGTTGCTG
CTGGAATTGCCACAAGTGTTTAAGCTACAAGAACTATACCGACACGCCAA
TGCTTGATAAATGCAAGACTTGCCAAAAGTATTACCACACCTTAGATAAC
AAGGTATGTATTCCAACTGAAATAAAATGGTTGGAGATCAACGACCCGGC
TGGCATGTCTATTGTCATTATCAGTGCGATTGGCTTCCTTGCTACATTTG
CGACTACCATCTTCATAGCTAAGTATAACGCCTTAGTTACACTGTACGAT
TCATCTAAACACATGTTATCGTTTGTCTGTGTTTTGTTGTTCCTGACCTT
CATCTACGGGCCGTTGCACATTTTGGAGCCGAATGACGCCCTGTGTAAAT
TCCGGAATGGATATTTCTTCATTCTCCTCATGATGTATTGTGCGTTCGTG
CTTGTACAAACACAAGCTATGACCAGTTATCTGAAAGGGCACGCGGACCG
TACGTTCGGTGGGATTCTGTTAGCCACACAATTGCTGGTGCTTCTAATGT
TCTTTCTACTTGAACTGGTATCGGTCATTGCATGGTTATACGTGGACGGT
TATCAATTAAAGGAGGACCGTGACACAACATCTCAAGTCATCTTAAAGCA
ATGTGAAGTGGAATTTACAGCCGCTCGCCTCGTTTCCACGTTCATCCCCT
GTATCATCTTGATCATCGCTACTTTCTGCGCTTTCCGTGAGCGGAATGCA
GATCACTCATTCTATGAGCCGAAGTTCCTCAGTTTCTCATGCATCGCTTT
GTGTATCATAATCGTGGCTTTTCTACCGACCTTCAGATATGTTGTCGGTA
TTTATAAAGCTATAGTCCTGGCTTACACTATGAATGTGTTTGGATTTACG
TTCCTAGTGTGTCTCATCCTACCGAAAGTGTACGTCGGAGTGATACGCAA
GCGCCGCGGAAAGGATGAATACCCACTAAAGAAAAGCGCTACCAAGCGCA
AGAAGAATAAAAAAGAAGACAAGAAGAAACAAAACGACACCCAGTTGGAA
ACAACAAGCGTCATTGAAACCACCATGACCCGACCACTGGGAACGGTCGA
TAATTCGACCTCCGAAGTATCGGACACGGCCGATATCCGACTTGATGAGA
AGCAGCTCAACGGAAAGCAACACAGTGAGCAACTCACTTTCAGTAATGGT
GGAAATTCTCAGGGAGAAAAATGCTAATAAAGGAGAGACTCTTTGTATTT
AAATGGTAGCAGATATTAACGGATAGATGGAGGATGACTGTCATATTCGA
ATCATTTTCATAATTGGTCACTGTACAAATTAGCAAAAGTTTATGTAATT
GCATTTTTGAGGACGCCGGAGTGACTGAAGCGTTTTTGAATAACTCGCAA
AATAGTGGATGGTAAAAATGTTGATTTATCATCCTTCCTAGTCAGTTAGG
ATCTAGACAAATCATTAGCTAACCATCAATGTCGCTGAAATACACAGATA
CATGAACTCGCTATTCTCCCTCAATGGGGAACTGAATCCGATGACAAATA
ACTTTGGATGAATGAAGTAGGGCTAGAAACGAATCTCCCAGTAGGATTTG
GAGCCGCCAAATCCTACCTAAGTTGCGCGGCCTTGAACGGCCCGGGTGGT
TTTTATACAAATTCCTGCTTGAAAGTAAAATTTGCCGCTATATATCAATA
AATATACCACTCGTAAACAAAGAAACCGCTAAATTCAATCCGTCGTTAAA
AATAACGGCGTATATATTAAGGCTTCACTTTTTCTTACCTGAGAATGGTT
AAAGATTCGCTTCTAGCCCTTCGGGATTTTACTTCATTGCTTTGAGTTAT
ATACCTAGTGGAGATCTTTGGTCATTCCTTGAAAGAACATAAATCACATA
ATCGCTTAGATGATTACCTGGTGTAGTCTAGCTTCTTAACACTTTTTAAT
GGCATACTTTATCAGGATATTTTGTTTCTTGACTAGATAGAGGAATTTAT
TATCATAACATACTTTTACAGACGAGCTTTCCTTGGAGCTTCTTGAAACT
CGATTTCATTGATGAGAAGGAATCTTAAGGGATCTATATTGAAATATTTT
CGTAGAATTTTATTATAAAGGTTGGTTGAGGAGTATATTTACTATATTTT
GATCTAATTTTTTTATTTAATTTATTTAAAAACTCACTCCTATATATACA
CACTTGGTTGTCAAATGGTTTTTATATTTTACAGTCTTGATGAAGTTTAA
GGATGTCTCAAGGGAAATTTCTGCCGAATATATGGGATTGAAATTTCGTC
ACTATCATTTTATCACGCACATTCGGCTTTGGCAAAAATAGACATTCTGA
CCGGGAATTCCACTACGGCTTAACCCTTTCCTTGCCGCTGACGGCATATG
TCGACAATAGCGAAGTAAATACATATCACTTATGTTTCTGATATTTTTTA
GAAAATAAAGCTAAATGAGATGGTAAACTCTGTGGTCGCTCATGTCGGTA
TATACCGACATCTGGCAAATAGGTCGAACCCTTAAAAAGTACAAACGGAT
ATTACTGCTTAACTAGAAAATACACAGTTTTAAGATTGAGAATCTTCGCT
CATGTGTAATATAATATTTTTGGTGCAAAAATCCAAACTTCTTCAATT

Coding sequence (CDS) from alignment at sc0000041:827442..834389-

>TCONS_00004312 ID=TCONS_00004312|Name=TCONS_00004312|organism=Clytia hemisphaerica|type=CDS|length=2934bp|location=Sequence derived from alignment at sc0000041:827442..834389- (Clytia hemisphaerica)
GAAAAACAGATCGCAAAATATTATAAAACCAACAATTATCCATCAGAGAA
AAAAAGACTACACAAAACTCTTATGGTCACACAAGCCAAGTCAAAAAATA
TGTATTTGGTATTTTGTATCCTTGCTTTGTTCGTGTGTCACTCATTACAA
CAATGTACGAATTCCGATTTTTACGAAAAACAAATCAAAAACCATAACAT
CGAAACGAGGCTAACATACCTCGAAAATGGAAACTACACAATACAAGCTT
TACTTGTGTTTTCCGAAATGAACACCAAATGCGGACAGATTTCCAAATCG
GGATTAATTTCCATGTTTTCAATCCGATATGCGATCGGGAAATTTAATGA
TGATCCGTTTTATGGGAGTAGAGCCCGAATCGGGTTACAACTGGATGATA
GTTGTGGGCAATTACCAACAACCATGGCACGTGGAATCGAGGTGGTCTCA
TTTCATCGGAATAATTCCGTTTGTCGATCGGATTTTATCCGTTGTAACAA
GGATGACGTGAAAAATGTCGACATCAAAGAAGCGTCAGCCCTCATTGGCA
CGTTAATGAGTTTTACGACAATTCCTTTGTCCAGTTTAATGTCCCTGTAC
GATATACCACAAGTCAGTCCTTCAGCTTCCAGTCGTCTCCTCAGCAAGAA
AGAACTCTACAAATCTTTTTTTCGGACAATTTCTTCGGACACTAATCAAA
TTAAAGCCATGTTGGATATCTTTAAAAAGTTCAAATGGAATTATATTTTC
GCCGTGGGCTCTGATGACGATTATGGAAAACTGGGCGTGTCCGATCTCAA
ACAATTGACCAGCAGTTTAGAAGGGAAAGAGAAGATTTGTATTTACAAAG
ACGAATACATACCGTACCAGTCCGAGAAAACAGAATCGAAAATTAAAGAG
GTTGTCAGCAAAATCAAAGAAGGGAAAGATGCTAAGGTTGTCGTCTTATT
TCTGTACGTTGAGAGTATAGGGGAACGCATCATAGCTGAAGCTCAACGTC
AAGGAGTGGAACGTATTTGGTTAACCAGTGAAGCATGGAATCCTGCTGCT
GCTACCATCTTCTCAAAGAAACTCAACCTCCAAAATCAAACTCATGGTAT
CCTGTCTGTATCTCTACAAAGTCACAAGTTACCAAAACTTCAAAATTATA
TCAAAAAAGAAGTCCTCACAAATTACAAATGCAATAAGTGGCTTCAACAA
TACATTCAGAATATGTGGGGATGTCAAATTGATACCCTGAGACAATCTGA
CAAAGCTTTCACTTGCCAAGGATCTAGCGAGGTGGTCAATTCCTCCATTG
TGATTAGAGAGTTGGTCACCGAGCTGCCAGGAGGAACAGATCGTTTAATA
GATGCTGGATACGCTCTCGGTTTAGCTATGAATACCGTACTTAATCAAAC
TTGTCCGCGCGGTGGGTCCAAGTGTCAAATTCCTAAGCTAAGACCAGCCG
ATATTACTGACGCAATGGAGAAGATTTCTTTCATAAATGACCAGGGAAAG
AATATCACATTTAACAAAGACGGGGAACCAACCACTGCTTTCTATACAAT
CGAGAACCTAGTCCATGATGGGGAGAAGATGGTGTACCAACCTATCGGAA
ATTGGTCCGAGAAAAATCTTCAGTTGGATGTGGACGCTATACAATGGCCT
TATTGGTTTGAAAAGAATACGACTGTAGGTGAGATTGACTTCCCATCGTC
TCGTTGTAGTAGAGAATGTCAACCAGGCGAGTTTGTAGTTGGGCGTACAG
GTTGCTGCTGGAATTGCCACAAGTGTTTAAGCTACAAGAACTATACCGAC
ACGCCAATGCTTGATAAATGCAAGACTTGCCAAAAGTATTACCACACCTT
AGATAACAAGGTATGTATTCCAACTGAAATAAAATGGTTGGAGATCAACG
ACCCGGCTGGCATGTCTATTGTCATTATCAGTGCGATTGGCTTCCTTGCT
ACATTTGCGACTACCATCTTCATAGCTAAGTATAACGCCTTAGTTACACT
GTACGATTCATCTAAACACATGTTATCGTTTGTCTGTGTTTTGTTGTTCC
TGACCTTCATCTACGGGCCGTTGCACATTTTGGAGCCGAATGACGCCCTG
TGTAAATTCCGGAATGGATATTTCTTCATTCTCCTCATGATGTATTGTGC
GTTCGTGCTTGTACAAACACAAGCTATGACCAGTTATCTGAAAGGGCACG
CGGACCGTACGTTCGGTGGGATTCTGTTAGCCACACAATTGCTGGTGCTT
CTAATGTTCTTTCTACTTGAACTGGTATCGGTCATTGCATGGTTATACGT
GGACGGTTATCAATTAAAGGAGGACCGTGACACAACATCTCAAGTCATCT
TAAAGCAATGTGAAGTGGAATTTACAGCCGCTCGCCTCGTTTCCACGTTC
ATCCCCTGTATCATCTTGATCATCGCTACTTTCTGCGCTTTCCGTGAGCG
GAATGCAGATCACTCATTCTATGAGCCGAAGTTCCTCAGTTTCTCATGCA
TCGCTTTGTGTATCATAATCGTGGCTTTTCTACCGACCTTCAGATATGTT
GTCGGTATTTATAAAGCTATAGTCCTGGCTTACACTATGAATGTGTTTGG
ATTTACGTTCCTAGTGTGTCTCATCCTACCGAAAGTGTACGTCGGAGTGA
TACGCAAGCGCCGCGGAAAGGATGAATACCCACTAAAGAAAAGCGCTACC
AAGCGCAAGAAGAATAAAAAAGAAGACAAGAAGAAACAAAACGACACCCA
GTTGGAAACAACAAGCGTCATTGAAACCACCATGACCCGACCACTGGGAA
CGGTCGATAATTCGACCTCCGAAGTATCGGACACGGCCGATATCCGACTT
GATGAGAAGCAGCTCAACGGAAAGCAACACAGTGAGCAACTCACTTTCAG
TAATGGTGGAAATTCTCAGGGAGAAAAATGCTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002392XLOC_002392Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004312-exon-sc0000041-1575043694:833660..834389TCONS_00004312-exon-sc0000041-1575043694:833660..834389Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1575043694:833004..833211TCONS_00004312-exon-sc0000041-1575043694:833004..833211Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1575043694:832033..832192TCONS_00004312-exon-sc0000041-1575043694:832033..832192Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1575043694:831298..831695TCONS_00004312-exon-sc0000041-1575043694:831298..831695Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1575043694:827442..830302TCONS_00004312-exon-sc0000041-1575043694:827442..830302Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1510915933:833660..834389TCONS_00004312-exon-sc0000041-1510915933:833660..834389Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1510915933:833004..833211TCONS_00004312-exon-sc0000041-1510915933:833004..833211Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1510915933:832033..832192TCONS_00004312-exon-sc0000041-1510915933:832033..832192Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1510915933:831298..831695TCONS_00004312-exon-sc0000041-1510915933:831298..831695Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1510915933:827442..830302TCONS_00004312-exon-sc0000041-1510915933:827442..830302Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1491911889:833660..834389TCONS_00004312-exon-sc0000041-1491911889:833660..834389Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1491911889:833004..833211TCONS_00004312-exon-sc0000041-1491911889:833004..833211Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1491911889:832033..832192TCONS_00004312-exon-sc0000041-1491911889:832033..832192Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1491911889:831298..831695TCONS_00004312-exon-sc0000041-1491911889:831298..831695Clytia hemisphaericaexon
TCONS_00004312-exon-sc0000041-1491911889:827442..830302TCONS_00004312-exon-sc0000041-1491911889:827442..830302Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004312-proteinTCONS_00004312-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000041supercontigsc0000041:827442..834389 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.25153	4.52055	1.85935	1.74329	36.3211	27.3889	29.5248	32.0056	15.6617	22.2653	19.159	12.8735	21.7578	20.0614	16.6438	23.9801	17.7018	20.5525	23.3664	31.625	14.7528	14.5814	11.9543	15.5846	21.5799	27.4224	110.746	74.6094	24.2455	21.9458
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR011500GPCR_3_9-Cys_dom
IPR017978GPCR_3_C
IPR001828ANF_lig-bd_rcpt
IPR028082Peripla_BP_I
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
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BLAST of TCONS_00004312 vs. Swiss-Prot (Human)
Match: GRM8 (Metabotropic glutamate receptor 8 OS=Homo sapiens GN=GRM8 PE=2 SV=2)

HSP 1 Score: 224.942 bits (572), Expect = 3.077e-60
Identity = 200/858 (23.31%), Postives = 380/858 (44.29%), Query Frame = 3 
Query:  144 SLQQCTNSDFYEKQIKNHNIETRLTYLENGNYTIQALLVFSEMNTKCGQISKS-GLISMFSIRYAIGKFNDDPFYGSRARIGLQLDDSCGQLPTTMARGIEVVSFHRNNSVCRSDFIRCNKDDVKNVDIKEASALIGTLMSFTTIPLSSLMSLYDIPQVSPSASSRLLSKKELYKSFFRTISSDTNQIKAMLDIFKKFKWNYIFAVGSDDDYGKLGVSDLKQLTSSLEGKEKICIYKDEYIPYQSEKTESKIKEVVSKIKEGKDAKVVVLFLYVESIGERIIAEAQR--QGVERIWLTSEAWNPAAATIFSKKLNLQNQTHGILSVSLQSHKLPKLQNYIKKEVLTNYKCNKWLQQYIQNMWGCQIDTL-RQSDKAFTCQGSSEVVNSSIVIRELVTELPGGTDRLIDAGYALGLAMNTVLNQTCPRGGSKCQIPKLRPADITDAMEKISFIN---DQGKNITFNKDGEPTTAFYTIENLVHDGEKMVYQPIGNWSEKNLQLDVDAIQWPYWFEKNTTVGEIDFPSSRCSRECQPGEF--VVGRTGCCWNCHKCLSYKNYTDTPMLDKCKTCQKYYHTLDNKVCIPTEIKWLEINDPAGMSIVIISAIGFLATFATTIFIAKYNALVTLYDSSKHMLSFVCVLLFLTFIYGPLHILEPNDALCKFRNGYFFILLMMYCAFVLVQTQAMTS-YLKGHADRTFGG-IXXXXXXXXXXXXXXXXXVSVIAWLYVD--------GYQLKEDRDTTSQVILKQCEVEFTAARLVSTFIPCIILIIATFCAFRERNADHSFYEPKFLSFSCIALCIIIVAFLPTF----RYVVGIY-KAIVLAYTMNVFGFTFLVCLILPKVYV 2645
            ++ Q T+S  Y      H+I      +  G + + A     E    CG++ K  G+  + ++ YAI + N DP   S   +G+++ D+C +    + + +  V          SD    N D        + S +IG   S  +I +++++ L+ IPQ+S ++++  LS    Y  F R +  D+ Q +AM+DI     WNY+  + S+ +YG+ GV    Q++  + G   +CI + + IP +    E   ++++ ++ E  +A+ V++F   + I  RI+  A++  Q    +W+ S++W    A ++ +    +    G +++  +   +     Y +   L N + N W  ++ +  +GC++ +  +++     C G   +       R+   E  G    +IDA Y++  A++ +    CP     C  P++   D  + +  I  +N     G  +TFN++G+     Y I       +   Y+ IG+W+ + L L V+ +QW +         E   P+S CS  C+PGE    V    CCW+C +C  Y    D    + C   Q+    ++   C    I  LE + P  +  V ++ +G +AT    +   +YN    +  S + +   +   +FL +    L I  P+  +C FR  +  + +    A +L +T  +   + +G    T    I  A+QL++      ++L+ V  W  VD        G Q   D +    V+  +C++    + + S     ++++  T  A + R    +F E K + F+    CII +AF+P F    +    +Y +   L  +M++     L  L +PKVY+
Sbjct:   26 TMMQRTHSQEYA-----HSIRVDGDIILGGLFPVHAK---GERGVPCGELKKEKGIHRLEAMLYAIDQINKDPDLLSNITLGVRILDTCSRDTYALEQSLTFVQALIEKDA--SDVKCANGDPPIFTKPDKISGVIGAAASSVSIMVANILRLFKIPQISYASTAPELSDNTRYDFFSRVVPPDSYQAQAMVDIVTALGWNYVSTLASEGNYGESGVEAFTQISREIGG---VCIAQSQKIPREPRPGE--FEKIIKRLLETPNARAVIMFANEDDI-RRILEAAKKLNQSGHFLWIGSDSWGSKIAPVYQQ----EEIAEGAVTILPKRASIDGFDRYFRSRTLANNRRNVWFAEFWEENFGCKLGSHGKRNSHIKKCTGLERIA------RDSSYEQEGKVQFVIDAVYSMAYALHNMHKDLCPGYIGLC--PRMSTIDGKELLGYIRAVNFNGSAGTPVTFNENGD-APGRYDIFQYQITNKSTEYKVIGHWTNQ-LHLKVEDMQWAH--------REHTHPASVCSLPCKPGERKKTVKGVPCCWHCERCEGYNYQVDELSCELCPLDQR--PNMNRTGCQLIPIIKLEWHSPWAVVPVFVAILGIIATTFVIVTFVRYNDTPIVRASGRELSYVLLTGIFLCYSITFLMIAAPDTIICSFRRVFLGLGMCFSYAALLTKTNRIHRIFEQGKKSVTAPKFISPASQLVITFSLISVQLLGVFVWFVVDPPHIIIDYGEQRTLDPEKARGVL--KCDIS-DLSLICSLGYSILLMVTCTVYAIKTRGVPETFNEAKPIGFTMYTTCIIWLAFIPIFFGTAQSAEKMYIQTTTLTVSMSLSASVSLGMLYMPKVYI 840
The following BLAST results are available for this feature:
BLAST of TCONS_00004312 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM83.077e-6023.31Metabotropic glutamate receptor 8 OS=Homo sapiens ... [more]
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