TCONS_00004353 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00004353
Unique Name	TCONS_00004353
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2634

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000044:90409..95968+
coding sequence from alignment at sc0000044:90409..95968+

transcript sequence

>TCONS_00004353 ID=TCONS_00004353|Name=TCONS_00004353|organism=Clytia hemisphaerica|type=transcript|length=2634bp
TCATGCCAAAGTATTTAACCCTTGGGTTTTTCTCTCATACTTGTATCACA
TTCACATATTTAGTTTGCTTGCCACAAATNAAGAATACTGCATCATGCCA
AAGTATTTAACCCTTGGGTTTTTCTCTCATACTTGTATCACATTCACATA
TTTAGTTTGCTTGCCACAAATCTTGATCATTCATATAAAGCGGTTGTTAG
TGATATGGCATCAAGGATTGGTTTTTGAAGAAGAAAGTTTCAAAGAGATT
AATTTACGAGAAAAGaaataacaatGTCATCATCACCATTAACTATCATT
ATGGATACCACCCAACAACCAACAACACTTGCTTCAACGACTCATCCTTC
TGCAGCATTGGAGGGCGACCGATCACGTGACAATCAGCatgaaaaagaaa
gacaatacATTTCATTGATTGGTTGCTTGATCACTGTCACTGTCCTTATG
ATCCTCTTCTGTTTCATATTCTGGAAAAGATCCAACATACGAAGGTTTTT
CAAGCAAAAGAACAAAGCGATCGTAGTGAAGATGATTGAATACCGTCGAG
AATATCGAAGAAATGCTATCACTGAGGATACTTATGACAATATTTTCAAT
GAAGatttcaaatcaaaatatctCAAGTCAGAGATTTACACTATAGATAT
GGAAGAGTGCACAGACGGGGTCAGTTTCACATTCGATCTTGACAAATACG
AAATGAACGGTAGAGAAGAtgttaaagaaaaaacaaccaataaaTCTGCC
GACCAAGTCGACCAGAGTGAATTTGCAGATAAAAATCATTACCAGATTTC
aaaaaagaccaaaagaaaTCCATACGAGAACGTCGAAATTGCAGTTCGTT
CGAAGACAGACGAGATCAAACGCCGACATGACGTCGTCAAAGAGATTGAA
GTAGTACGAACTTTTTCCAGCGGCAAACTTCCTCGACGGAACAACCTTCA
AACGAAAATACCTGAATTCACATGCTCTGATCCTCATTATGCAGTCCCTG
TCGTAACACCAAAAACTGATATCCAACCTTTTGAAGCAGGTCTGAACACT
AACGATGAGGGGAAATTAGAAAGCCCGTACCAAGTGCCGACAGGCGAGAA
TGAGCGCCAGAGATCAGTTGAACATTTAGATGGCTTGCTTAACGAGCTCG
ATGTAGTTtacaagaaaacaaaagaacaaaaaatgagTGAATATTACAAA
AGAGTTTTACAAACACCTGTTGAGAAGGAACAAAAGAACAATAATGTAGG
TGAAAAAGAAACATCCATAACTGTTGCTATATTTGCTGAGAAAGATGGCA
AAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAG
AAATGATTTTAATCCTAACGAAGACATACTTTCTGGTAAAATGTATTTTC
CACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACTAGAAATGAGTTTAA
TCCTAACGAAGACATACTTTCTggtaaaatatattttccaccTGCAAAAC
TTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGA
CATACTTTCTGGTAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTG
GAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGACATACTTTCTGG
TAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACT
AGAAATGAGTTTAATCCTAACGAAGACATACTTTCTggtaaaatatattt
tccaccTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTT
AATCCTAACGAAGACATACTTTCTGGTAAAATGTATTTTCCACCTGCAAA
ACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAA
GACATACTTTCTGGTAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGT
TGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGACATACTTTCT
GGTAAAATGTATTTTCCACCTGCAAAACTTGaaaaggttggaagattgga
CGAGAAATGGTTTTCTGGCAATGTTGGTGGGCGTCAGAATGTTGGCGGAA
TCAAACAATCTGATTCTCATGGAGAAAAAGGATGCTTACAATAACGGAGA
TACGAATATCTAACTATAAATTTACCAATCTGGTTCACACCCCATTCACA
AAATCAATAACTTATTAGAACAAAAAAGAAACGATGCAAAAATGTTTCTA
CCGATCCAAAGGGTCGTCATAGTAAAAGTTGTAcacttttttcaataaaa
acaaactatcacaggaaaaaatccgtgaatcacatgcgtgtgaaaaccaa
ttttcgaggatgtgatcctgcaaaaaatcacatgcgtgtgaaaatgtaAT
TCACAATCCATCTTTTCTAACTTGTTAAATAGAATAGAATGTGAGTTACT
TTTAGGGTATTAAACCTCTCTCTCTAAGAAAGATAAACAATCCTATTTGT
GATTTTAAGTCTAGTCACACCCCATTTAATAAGTCGAGAAAAGATGGCTT
GTGAATTGtattttcacacgcatgtgattttttgcaggatcacatGCTAG
GAAatcgttgttactaaaagtggtaacggtaggt

Run BLAST on NCBI

protein sequence of TCONS_00004353-protein

>TCONS_00004353-protein ID=TCONS_00004353-protein|Name=TCONS_00004353-protein|organism=Clytia hemisphaerica|type=polypeptide|length=360bp
MSSSPLTIIMDTTQQPTTLASTTHPSAALEGDRSRDNQHEKERQYISLIG
CLITVTVLMILFCFIFWKRSNIRRFFKQKNKAIVVKMIEYRREYRRNAIT
EDTYDNIFNEDFKSKYLKSEIYTIDMEECTDGVSFTFDLDKYEMNGREDV
KEKTTNKSADQVDQSEFADKNHYQISKKTKRNPYENVEIAVRSKTDEIKR
RHDVVKEIEVVRTFSSGKLPRRNNLQTKIPEFTCSDPHYAVPVVTPKTDI
QPFEAGLNTNDEGKLESPYQVPTGENERQRSVEHLDGLLNELDVVYKKTK
EQKMSEYYKRVLQTPVEKEQKNNNVGEKETSITVAIFAEKDGKMYFPPAK
LEKVGRLDEK

Run BLAST on NCBI

transcript from alignment at sc0000044:90409..95968+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00004353 ID=TCONS_00004353|Name=TCONS_00004353|organism=Clytia hemisphaerica|type=transcript|length=5560bp|location=Sequence derived from alignment at sc0000044:90409..95968+ (Clytia hemisphaerica)
TCATGCCAAAGTATTTAACCCTTGGGTTTTTCTCTCATACTTGTATCACA
TTCACATATTTAGTTTGCTTGCCACAAATNAAGAATACTGCATCATGCCA
AAGTATTTAACCCTTGGGTTTTTCTCTCATACTTGTATCACATTCACATA
TTTAGTTTGCTTGCCACAAATCTTGATCATTCATATAAAGCGGTTGTTAG
TGATATGGCATCAAGGATTGGTTTTTGAAGAAGAAAGTTTCAAAGAGATT
AATTTACGAGAAAAGGTGAAACTGACTTGACTGGCATCTTCACTGAAGGA
ACCTTCAAATGGCTTTGCTCCCCTTAGCCAGTATTAGGAAACAACCTGAT
CGTTTTGAGACAGAATTTTCTACTGATTAATAACGTTTAAGTGTCTGTAA
AAAAAGGCTAACAAATAGACTCGGGCACGCTTTATGCTTGGTGTAGAACA
CAANTTAATAACGTTTAAGTGTCTGTAAAAAAAGGCTAACAAATAGACTC
GGGCACGCTTTATGCTTGGTGTAGAACACAAATCTATCTAACTCGTGAGC
CTTTCTTTAGtagttgaaatttcaaattaaacttCATCGTCGGTAGGGAA
GGGGTGTTAACTTGGCACCTTCGAATTATACTGCTCCATTATCTTATTAT
TCGAATAAGACCAGGTTCTTACgtaacggttccgtttcgctccgaaacaa
aattaagccattctattggttaaaaatGACGTAAGTTTttaatgtaacca
atagaatgacttCAGTTTGTTTCGGAGTGAGACAAAACCGCAACGTGTGA
ACGTAATCTTAATTGTaccaagaaaaaaacatttctcaacttcttctttc
aaaaatagaaataacaatGTCATCATCACCATTAACTATCATTATGGATA
CCACCCAACAACCAACAACACTTGCTTCAACGACTCATCCTTCTGCAGCA
TTGGAGGGCGACCGATCACGTGACAATCAGCatgaaaaagaaagacaata
cATTTCATTGATTGGTTGCTTGATCACTGTCACTGTCCTTATGATCCTCT
TCTGTTTCATATTCTGGAAAAGGTGAAAAACCTCTTGTATTTCATATCAT
ATATAGAAAATTACGTATTTAACATCTCCAAGCACATACTCCAATGTAAT
AGCTGGGCTCCCTCTGATAAGTGGCGACAAAACCTATTGTGTCCCTGTGG
GTAGTCAACCTGTAAGagaatttttaacttttcatgGTTTTCGTACCCTT
AAAGAGAcccaaaaaaggggaaaactttttttctctgaTAAAGAGTTTCT
TGGGGTGGAGATCACACACTACAGTCATTCAATCTTTATTCAAGTATCAG
GAACACATCCCTTAATAAATGTGTACGATCATAAAACAGTTATGCGAATG
ACGTCTTTCAGAGATAATGAGGTCATTTAAATGGCTTTTAAAGCGGAAAG
GGAGTTAAAACTCTTATGCTgccaaaatatttcataaatgaTCCTCGCGC
AAGTTAGAGAACAAATGAGATTTCACAAAGTCGAAGTTGACAGCCAAACC
ATTTTTTACTTCTCaattaatttttatgaaaacatGGAACATCTTTTTAC
TCCTTGGGTTTATCCAAATCTTACATATAAGAAATAATCCGGGGAGAGAA
GTGAAAATTGGAGACCGTTCAGAGACCTTTCAAGGACGACAAAGTTCACA
AATATTAGCTAACTttaaaacatgatttaaaagaAGGATTAGGTGAAGGA
GAAGTATGACCATTTATTGCAGGACGTTCTAGAAGATCTCATCAATTTTT
CTTGCTTCCGTTTAGATCCAACATACGAAGGTTTTTCAAGGTAATAAGTT
TTTTTCGATTCATTTTAACTTTCTCAGACTGAACCACGTCAAAGATTAAA
CCTCGAAAACCTGCGACACTTGCTGTATGAGATCATCAACTAAGTTACAA
GGGATTTGCCCCTGAAATTTTGCGCCTAGCAATTAATCCCtattttaagg
gctctgaccatagtcagaaaatttgtTAAGGGATTcgaagataaaacttt
tgttttgggtTGTTTTGGATTCCTTgtcatttttaacaaaaaaactgcCT
TTACAAGTTGTTCGGTAATTTATTCTGTCAGTAGAAATTACAAAATgatg
ttatgaactttaaaaagacgttgataaagttaccctcttttacaaaaaat
gtttcaatgggtaattaaactttttcttttgaaatgctTTTAaattgtcc
gcaaagaattgaactaaaaatttttcggaaaaattttctaaattgatgta
tcaaaaattgtgtcttttttaataattttccttctTACATCTTTTCATCT
TTCAGCAAAAGAACAAAGCGATCGTAGTGAAGATGATTGAATACCGTCGA
GAATATCGAAGAAATGCTATCACTGAGGATACTTATGACAATATTTTCAA
TGAAGGTACTTCATTTACCTCAATTGCAATTAACTTTTCTCTGCTTGGAG
TTCTATTTTTTACCCGTATTTTTCTGGTAGTACACTTACCGACCCAGCCA
CTAAATAGATATTCAGCTCGAAATTTCTAGGCTGGAATGGCTCCAAATCT
CACCTGGTGTACTGagattcttttttatattagCTTGGCTGTTTCCATTA
TTTTAGCAACCCCAAacggtttgcgtgatgacatgatagacttttttgta
acgtgataacgtgatttggaaattcttTTCTTGGTGATTGTGATTTGCAA
AATTATTGAGCTGTGATGCcttatttggactttttcaaagggatgcgtga
tcACCCAAacttttttgctgatttgcgtgatcttgattgaagacaaaaaa
ttgcgtgatatcgtgatcagattTACCACTTGGGGGTCTCTTTTAGGACA
ATATTATCgatgtttttcttcaaaatcatttttctattttctcatACAta
gatttcaaatcaaaatatctCAAGTCAGAGATTTACACTATAGATATGGT
AAGTGCAATTATAAATCTTCTAACCGTACTTTATTTGATAGcatcaattt
tataagaaaacttattgaacttgtaataaaattgtgtcaatttttctttc
aaaacacaaaagatACCTGATTACGCCTAATTTGACAAAGGAACGTTAAA
TCCAGGTTTAATCTCAATTTCGCTAAAGCTCACTTTCTTCATACAAGGGT
GGTCGTGGGTGGAGCACCCTTCTTGTTGACTTCGTTCTCTTCTGTTGCGA
GATTTATCTCAGTTCAAAATGGTAGAAGCCGAGCAACAACACTAAGAGCC
TTCGATCTGACTGGAAGCAGAAAGCTTTGCAATAAAATTTTACCTCTCTC
CCACCCTGAAAAGGCGAAAATGTTGTAGGCGACACTCGTACATATTCAAA
ACTTATCGAGCGGTTAGCcaaaatatatttcatcaaTAAATGATATTTTT
CACTTTGATCCCCAGGAAGAGTGCACAGACGGGGTCAGTTTCACATTCGA
TCTTGACAAATACGAAATGAACGGTAGAGAAGAtgttaaagaaaaaacaa
ccaataaaTCTGCCGACCAAGTCGACCAGAGTGAATTTGCAGATTACCAG
ATTTNCATTCGATCTTGACAAATACGAAATGAACGGTAGAGAAGAtgtta
aagaaaaaacaaccaataaaTCTGCCGACCAAGTCGACCAGAGTGAATTT
GCAGATAAAAATCATTACCAGATTTCaaaaaagaccaaaagaaaTCCATA
CGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGACGAGATCAAACGCC
GACATGACGTCGTCAAAGAGATTGAAGTAGTACGAACTTTTTCCAGCGGC
AAACTTCCTCGACGGAACAACCTTCAAACGAAAATACCTGAATTCACATG
CTCTGATCCTCATTATGCAGTCCCTGTCGTAACACCAAAAACTGATATCC
AACCTTTTGAAGCAGGTCTGAACACTAACGATGAGGGGAAATTAGAAAGC
CCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAGAGATCAGTTGAACA
TTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTtacaagaaaacaaaag
aacaaaaaatgagTGAATATTACAAAAGAGTTTTACAAACACCTGTTGAG
AAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAAACATCCATAACTGT
TGCTATATTTGCTGAGAAAGATGGCAAAATGTATTTTCCACCTGCAAAAC
TTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGA
CATACTTTCTGGTAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTG
GAAGGTTGGACTAGAAATGAGTTTAATCCTAACGAAGACATACTTTCTgg
taaaatatattttccaccTGCAAAACTTGAAAAGGTTGGAAGGTTGGACG
AGAAATGATTTTAATCCTAACGAAGACATACTTTCTGGTAAAATGTATTT
TCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATTTT
AATCCTAACGAAGACATACTTTCTGGTAAAATGTATTTTCCACCTGCAAA
ACTTGAAAAGGTTGGAAGGTTGGACTAGAAATGAGTTTAATCCTAACGAA
GACATACTTTCTggtaaaatatattttccaccTGCAAAACTTGAAAAGGT
TGGAAGGTTGGACGAGAAATGATTTTAATCCTAACGAAGACATACTTTCT
GGTAAAATGTATTTTCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGA
CGAGAAATGATTTTAATCCTAACGAAGACATACTTTCTGGTAAAATGTAT
TTTCCACCTGCAAAACTTGAAAAGGTTGGAAGGTTGGACGAGAAATGATT
TTAATCCTAACGAAGACATACTTTCTGGTAAAATGTATTTTCCACCTGCA
AAACTTGaaaaggttggaagattggaCGAGAAATGGTTTTCTGGCAATGT
TGGTGGGCGTCAGAATGTTGGCGGAATCAAACAATCTGATTCTCATGGAG
AAAAAGGATGCTTACAATAACGGAGATACGAATATCTAACTATAAATTTA
CCAATCTGGTTCACACCCCATTCACAAAATCAATAACTTATTAGAACAAA
AAAGAAACGATGCAAAAATGTTTCTACCGATCCAAAGGGTCGTCATAGTA
AAAGTTGTAcacttttttcaataaaaacaaactatcacaggaaaaaatcc
gtgaatcacatgcgtgtgaaaaccaattttcgaggatgtgatcctgcaaa
aaatcacatgcgtgtgaaaatgtaATTCACAATCCATCTTTTCTAACTTG
TTAAATAGAATAGAATGTGAGTTACTTTTAGGGTATTAAACCTCTCTCTC
TAAGAAAGATAAACAATCCTATTTGTGATTTTAAGTCTAGTCACACCCCA
TTTAATAAGTCGAGAAAAGATGGCTTGTGAATTGtattttcacacgcatg
tgattttttgcaggatcacatGCTAGGAAatcgttgttactaaaagtggt
aacggtaggt

Coding sequence (CDS) from alignment at sc0000044:90409..95968+

>TCONS_00004353 ID=TCONS_00004353|Name=TCONS_00004353|organism=Clytia hemisphaerica|type=CDS|length=1083bp|location=Sequence derived from alignment at sc0000044:90409..95968+ (Clytia hemisphaerica)
atGTCATCATCACCATTAACTATCATTATGGATACCACCCAACAACCAAC
AACACTTGCTTCAACGACTCATCCTTCTGCAGCATTGGAGGGCGACCGAT
CACGTGACAATCAGCatgaaaaagaaagacaatacATTTCATTGATTGGT
TGCTTGATCACTGTCACTGTCCTTATGATCCTCTTCTGTTTCATATTCTG
GAAAAGATCCAACATACGAAGGTTTTTCAAGCAAAAGAACAAAGCGATCG
TAGTGAAGATGATTGAATACCGTCGAGAATATCGAAGAAATGCTATCACT
GAGGATACTTATGACAATATTTTCAATGAAGatttcaaatcaaaatatct
CAAGTCAGAGATTTACACTATAGATATGGAAGAGTGCACAGACGGGGTCA
GTTTCACATTCGATCTTGACAAATACGAAATGAACGGTAGAGAAGAtgtt
aaagaaaaaacaaccaataaaTCTGCCGACCAAGTCGACCAGAGTGAATT
TGCAGATAAAAATCATTACCAGATTTCaaaaaagaccaaaagaaaTCCAT
ACGAGAACGTCGAAATTGCAGTTCGTTCGAAGACAGACGAGATCAAACGC
CGACATGACGTCGTCAAAGAGATTGAAGTAGTACGAACTTTTTCCAGCGG
CAAACTTCCTCGACGGAACAACCTTCAAACGAAAATACCTGAATTCACAT
GCTCTGATCCTCATTATGCAGTCCCTGTCGTAACACCAAAAACTGATATC
CAACCTTTTGAAGCAGGTCTGAACACTAACGATGAGGGGAAATTAGAAAG
CCCGTACCAAGTGCCGACAGGCGAGAATGAGCGCCAGAGATCAGTTGAAC
ATTTAGATGGCTTGCTTAACGAGCTCGATGTAGTTtacaagaaaacaaaa
gaacaaaaaatgagTGAATATTACAAAAGAGTTTTACAAACACCTGTTGA
GAAGGAACAAAAGAACAATAATGTAGGTGAAAAAGAAACATCCATAACTG
TTGCTATATTTGCTGAGAAAGATGGCAAAATGTATTTTCCACCTGCAAAA
CTTGAAAAGGTTGGAAGGTTGGACGAGAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002433	XLOC_002433	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00004353-protein	TCONS_00004353-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000044	supercontig	sc0000044:90409..95968 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.06255	7.10744	4.1182	4.1432	0.180194	0.0158844	0.169283	0.149328	0.062232	0.233613	0.0889329	0.147782	6.21633	3.51198	1.11474	2.34653	6.70385	7.07001	4.02548	4.33212	0.0432402	0.0633749	5.91064	4.40564	0.0161445	0.0141105	2.28345	0.432684	1.47382	2.36987

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00004353 vs. Swiss-Prot (Human)

BLAST of TCONS_00004353 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

You are here

TCONS_00004353 (transcript) - C. hemisphaerica