TCONS_00004397 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004397
Unique NameTCONS_00004397
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004397 ID=TCONS_00004397|Name=TCONS_00004397|organism=Clytia hemisphaerica|type=transcript|length=1757bp
atttcaggctagataaaaatataagaatacacgaaagaaaaataacaaaa
taattacTCTGCACAAGCTTTCCAACGACAACTTTCAAaatgtgtgacgt
caatttGGATAAACTTGAGGCTGAACAAGAAATGGTCAGAAAAGCCAAGT
TGAGAAATATGTCAGTGTGTATGAAATGCAAAATAGCCAAACCAGCCGTC
GTCATTCGTATCAATGATCCAATGTGCAAGGAATGTTTCTTACAATATGC
AACACACAAGTTCCGATCAACACTTGGGAaatcaaaactggtgaaagctA
ATGACAAGGTGTTATTAGCAGTATCAGGCGGACATACATCCAGAGCAATG
GTACACCTTGTCACTGAGgCGTTGAGTGAGAAAGCTCACAAACGATTGAG
ATTCTCACCTGGTATTGTTTTCATCGATGaGAGTTTTACACTGAAGAACG
atattgaaaaagaaacactAAAGTTTCAAGAAGAAATGAAGAAACATGGT
TATCCATTTTACACTGTGCCAGTGCATCAGAATTCTACAGGGAAAGATGA
ATTCCTGAAGAACTTTGAAACCGTATCCACATTAACTGCAAAAACGGATT
ATATCGAAAAACTAAGGTTACGTCTAATCGTTGAAACTGCCGTTCAACAT
GGCTACAATAAGATAATGCTTGGTGAAAACGCAACAACGCTATCGATGAA
ATTACTTTCCAACATTTCACAAGGACGAGGAATTTCGCTACCTAAAGATG
TGGCTGTTGGAGACGACAGATATCCCGATGTTATGGTTGTTCGACCAATG
AGGGAGCTTTCATCGAAAGAAGTTGTGATGTACAATCGTTTTGAAGACCT
TCCCTCGCTCATCTTACCCAACCTTCATACGATGGCTGAAACTGGAGCTA
GTTTGCAAAGACAAACTGAAGAATTTATCAATGGCTTACAGGTGGAATTT
CCATCGACGGTCAGCACAGTTTTCAGGACGGGTGACAAGTTGTGTTCGAA
CGCCTCTTACGATAATAACAATGAAAAATGTGCATTTTGTCAGGGCACTA
TATCGAAAGAGAAGATGGAATTCAATGAACCGGTCGACGTCAGTTGCGGA
AAGAAAGgTGGTTGTTGTGGGTCAAGCGATGAATGTTCAAGCAATAAATT
CAAGTTAAATACTGATGACATCAAAGCTAATTTATGTTATGGCTGCAATT
TGACGTTTAAAGATATGAGCCTCAACGTGGCATCGTTTCCGTTACAAACA
TTAGAAACTATCTCAACCAATATTAAAAGgGCTAAAATGAAAGAGACAAT
CCAAGATTTTCTACTGGAATGACACTTCTACAAAAGCAAACTgatgaata
taaatcaaaaccACAATTAAAGTTCAACCAAAACCAAATACTTTACTGAT
AACTCTGGACTCTAGTTGCTAACACAGTGCGTCTCAAGATTTTCTACTGG
AATGACACTGCTATAAAAGTTAATTGATGAATCTCAATAAGACAAGTGAA
GTCTCCTCCGACAGCTCTAGAGTCTAATTGCTAAAACAACGCATCTCAAT
AATACTTTGGATTGGTTAATATTCATGAAGTGACCATTGGTACCAGACTG
GTTTGATGTTTTATTTCGAAATTTAGGTCAAGCTGGAAGACGCTTGATTG
GAATGATTTTGTAAAGGgaacgtttttatttttcatagcTTTTTTTATAT
ATCGATGAGATTTTAAGTGAActacttgaaaaatatcattttatactTAA
AAACTAA
Run BLAST on NCBI

protein sequence of TCONS_00004397-protein

>TCONS_00004397-protein ID=TCONS_00004397-protein|Name=TCONS_00004397-protein|organism=Clytia hemisphaerica|type=polypeptide|length=410bp
MCDVNLDKLEAEQEMVRKAKLRNMSVCMKCKIAKPAVVIRINDPMCKECF
LQYATHKFRSTLGKSKLVKANDKVLLAVSGGHTSRAMVHLVTEALSEKAH
KRLRFSPGIVFIDESFTLKNDIEKETLKFQEEMKKHGYPFYTVPVHQNST
GKDEFLKNFETVSTLTAKTDYIEKLRLRLIVETAVQHGYNKIMLGENATT
LSMKLLSNISQGRGISLPKDVAVGDDRYPDVMVVRPMRELSSKEVVMYNR
FEDLPSLILPNLHTMAETGASLQRQTEEFINGLQVEFPSTVSTVFRTGDK
LCSNASYDNNNEKCAFCQGTISKEKMEFNEPVDVSCGKKGGCCGSSDECS
SNKFKLNTDDIKANLCYGCNLTFKDMSLNVASFPLQTLETISTNIKRAKM
KETIQDFLLE
Run BLAST on NCBI

transcript from alignment at sc0000044:143283..157538-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004397 ID=TCONS_00004397|Name=TCONS_00004397|organism=Clytia hemisphaerica|type=transcript|length=14256bp|location=Sequence derived from alignment at sc0000044:143283..157538- (Clytia hemisphaerica)
ATTTCAGGCTAGATAAAAATATAAGAATACACGAAAGAAAAATAACAAAA
TAATTACTCTGCACAAGCTTTCCAACGACAACTTTCAAAATGTGTGACGT
CAATTTGGATAAACTTGAGGCTGAACAAGAAATGGTCAGAAAAGCCAAGT
TGAGGTACAGACAATGACTGCTTCCTAAAGCTCCCTGAAATTTTTTTTAA
CATTTATGAATTGAATCTGTTAACTTCATTATAATACTCGAGACCTGTTA
GCTTATAGTTGGTTAGCCTGATATCAGGGTTTTACTCGCTCGCCAATTAT
AGTTGGTCGGGATTTTTATAATCCGAAATTATCAGTACGAAGATAGAAAC
AAATGTAGAAACTGTAGGATGATTGAACTTTCTTATTCCCGGCTAAACAT
TCCTATCACTACTTTACAACGGAAAAAGGCCGAGGCTCCGGGTTGGTAAA
AAAGTAATTTGTTAGGCGGTCACTGTGTATAGTGTAGCGTATTTCTCATG
CAGAAGAATATTTTTTCAGGTGTACCTTGAAAAAATAATGAAAAGATCGG
AGAATGCTCCAAGAATGTTTTGCCGGGAATAAGAAAGTGTTGCCATCGGG
GTATGCGGCTCCCTAACACACCAAATGATCTATCTCTTCTTATATCTCTT
CTTCGTAGCACCCAAAAAGAAAAGAAGACCGGGTGCTTGCCACTAATCTT
GAATTTAAGCAATAAAACTAGTGGCGAACTAAACAAATTTGGGTGCTTCC
TTATAAAATATTACGTCATGGATATCATGAATTGGACCCTTTTTGTTCTT
ATTTTGTTTTGCAGAAATATGTCAGTGTGTATGAAATGCAAAATAGCCAA
ACCAGCCGTCGTCATTCGTATCAATGATCCAATGTGCAAGTATGTCCTTT
GCCAATTCCTAATTAATTGTGTAAACCCTAGTAGGGTCATGATGTCTATA
TTCGATATACCTATCAACCCTTAAAAGTGGCGCAATCGACTTGTATATTG
GAGTGTTGACATCCAGAACAGAAAACAAAATGGCGTTCTATTTAGCCTTT
AAAAAACGGAACTAATTCCGGTGAATTAGTGAACTTGCTGATCGGTGATA
CAAGCCAGCCATAGAAATCAGCCTATTCGAAGTTGACATGGCAATACAAA
GGCCGCGTGAGTTCAGGAGCTAGCTTGTATCTCCAAATCTCTGAGTCGAT
ATTGATTCTTTTCTGTAGCTTTCACTAAAATGAAAGAAAAAAAGTCGAAT
ATACACGAACTCTCTACCCAGCCTAAAGCTTACAGAACTTCAAAAGTTCA
CTCAGTACAGACTTCTTTCAAATGTTCTTAATGTTCTTTAACCTTTGTTT
AACTACTAGGGAATGTTTCTTACAATATGCAACACACAAGTTCCGATCAA
CACTTGGGAAATCAAAACTGGTGAAAGCTAATGACAAGGTAGATCATGAT
TTTCCAGCAATTTATTTAAATGCTGAAGTTAGGCTTATGTTTATATGCGC
AGCTTTATATTATACTACTAATCTATAAAATTGATTAGATCGCTTAATTT
TTAGGGCGTTTAGGAGCATTTGAAATCAAAAAATATTTGAAAATTTGAGG
TTGCGGTGTGATATCGTTTAATGGGTTAGCCAACTGAGACTCGTCAGATA
AACAAAAGACTCATAATTTATGAATGCTTCGTTATCAAAATGTTTGTTCA
TTTATTACAGGTGTTATTAGCAGTATCAGGCGGACATACATCCAGAGCAA
TGGTACACCTTGTCACTGAGGTATATATTACTGATTCTTCTTCTTCCATA
GTGAATTTCGTGATTTCACGATCCCATATGTGCTCCTGAAAGTTTGTACG
ATTAAGATACAGACTGAACCGATTCCACATGCCTTTAAAACATGCTATAG
ACTATAGCATTACATACAGTCGAAGTTTTTAGAGTATTAATTTGCTGTGC
CTATGTTTTGGATTAAACCCCTGGGTTTTATTTAAGAAGTTTGAAACTTG
AGTTCTTGATGTTTTTATGAGTTCTCAGCTATTATAAATAGAAGGACCAA
ACAAGAGAGAGATCAAGCTCCGAAAAAAAAACGATAAGAGGGGTAGATAG
CCATAAAAAATTGGAGCCTGCGGGTGCCATGTAATTGCTAGGCTGGGCGC
ATCCCCAGAATTTATTTTGATATGTATTGTATATGAAAATCCCGTCCGAG
AGTTACCCAAATTTGGAGTAGCCAAAAGTTGCATGAATTTACATAATTTC
GTCACATCCAATCAAAGAAAGAAAACAATGAAATGTTTGTTTTTCAGCGA
CGGAGACGGTAAGGTTCTAATTTGACTAGATCATGACCAACTGAGAACGA
CGGTAAATCAGCACTTTTACCGTCCTCGATTTTGCGGGTCAGAAATGCGG
GCTTTTCCAAATCGCTTCAGTCACTTTACCGTCCTCAAAAGTGCAAATAC
ATAAACTTGCTACAGACTGAACCGATTCCACATGGCTTTAAAACATGCCA
TAGACTAGCTGTCGAAGTTTTTAGAGTATTAATTTGCTGTCGTGTTTGAA
ACTTGAGTTCTTGATATTTTTATAATTGATCATCAATCGAAAAAAAAACG
ATAAGAGGGGTAGATAGCCATCAAAAAATGGAGCCTGCGGGTGCCATGTA
ACTGCCCTAGTCTAGAAAGTGCTAGATCTGTTCTAAACTCATTTTTTTCT
TTTTTTATAGGCGTTGAGTGAGAAAGCTCACAAACGATTGAGATTCTCAC
CTGGTATTGTTTTCATCGATGGTAAGTCTACTTTTCTGCTCCAAACAAAT
TTATTATATACACGTGCATATATGAAAGTACACGTATATATAGGAACATC
CAAAATTTTTGAAGCCCAGAGAAAAATATACTTAAAATATTATTTTCACA
ATGTTCTAAGAAATTTGAGCGTTTACACTCAAGCCTTTGGAACACTTCGG
GTACGCGAAAATTCATCATAAATCGAAAAAACAGTCTTTCCCGGGGTAGC
GCCCGGGTAGACATAACCTTAAATTGTTATTGGCTTGTTCTTAATATTTT
GAACGTCTCAAAGCCTTCTGTTCGTATATATTTTTCTTTACAAAAACATT
TAAAATATTAATCCTATGTTGAATGAATTAAATTGTTTTGAAAATGAAAC
ATCATGAATGCTTTGCACATCAGAAAGAAGTGAAAACGCCTCTTCCCAAA
ATTTTGTCCTCTTTTATCTTTTAGAGAGTTTTACACTGAAGAACGATATT
GAAAAAGAAACACTAAAGTTTCAAGAAGAAATGAAGAAACATGGTTATCC
ATTTTACACTGTGCCAGTGCATCAGGTATATGTGCTGTCTATCAAGCTTG
TAATCTTTTTGTTTTGGGTTGAAGCAACAGACTTTTATAAACCCTGAACT
TTATCCGCCATCTTTGATCGGAGTTTTTTTTTAAGTTGTACCCGTAAAGA
AGTCATTACAGTCTTAAAACTTTGCCTGATATTCAACGGCACTACATCAT
CACAAGTATTTACATAAAGAATTTACATCACAATTTAGTAGTTCTACTGT
TAGGGAGCTAGATTGCATACGTGTCTTTTTTGGGCGGCTTGGATACTTCG
ATTCATGGTCAGATTCGGATGACATTATAAACTTGTTTGAATTAAGTGAA
TACCTATGGATTTGAATAAAAATTTTGTCCCGGGAGACTGGTTGGCGAAA
AACGGTTATAAACCTTAAATATCGCTCAGGGTGTCTACGGGACCTTGAAA
ACCTTGAAAACCTTGAAAACCTTGAAAATGAACCACCCAACCTTGAAAAC
CTTGAAAACTATCAATTTTCTGGGAAAAACCTTGAAAACCTTGAAAAATT
GTTAAAAACCTTGAAAAGCACTATCAAGTCATTCGAAAAGTAAGAATAAG
TAAAAAACCGCCTGCGGCGCTAAACCTTTATAACATTTAGAGAATTCCAT
ATTTCCCTGTTTCTGTTGCGATTCTGTCGCAACGAATGCAACATATTCTT
TTATCATTAGCTGAGTTTTTGTCACAAATTTTCCGTTTGCATGAGCCCTA
AGAAATCGACTGTTCCCCAATTTTCAAATCGCTTCAGGGCGTCTTGGAAT
AATGGCCGTTCATCAATAAAATTTCGAGGATCCTTAAAACAACTCTTTTG
GCAATTGATTTTTGTAAAAAACAAAATCAAAAACAAGGCGTTTTTTAGCC
TTTTGAAAGAGTCAAAATCAAAATTTTCTCTCGTCGGCGCAAACCATGGT
TGCGCCTCCTTGGTCACTGTAAACAATTGGTTATGCTTCTAATTCTATAT
TCCTACAGTTGGAAGACTAGGGAGCTGGAGTATTTCTTTTTGTGGTATTG
TTCTCGAGAGGGGATAGGAATTTAATTGTGGAAGTAATTCCCCGGGCACC
AAAAGTAAATAAATTTTATTTGCTGTCCTCTATCTTTCTTTCACCTACCA
CTCTGAAAAAAAAAAAAATTCCTGTAAAGAGCCATATCAACTGAGTATCA
AAAAACCTTGAAAAGTGCCAAAGTTTTTGCCAAAAAACCTTGAAAAACCA
CTTAAAAATGACCAAAAAAACCTTGAAAACCTTGAAAATCCCGAAAAAAA
ATCCGTAGACACCCTGTCGCTTGAAGGGTTCGAAAAGAGTTTTAAATTGC
AATAAATTGCTTCTTTACTTTAAATTACGTTTATTTCACTTCAGAATTCT
ACAGGGAAAGATGAATTCCTGAAGAACTTTGAAACCGTATCCACATTAAC
TGCAAAAACGGATTATATCGAAAAACTAAGGTATTATTTATGGAGCTTTA
GATGACCTGTCTTCATTATTAGGTGCCGTTATCCTGTTACACTTTAAGTC
CAGCAGTCAAATTCTTTCCCAGATTTCGTCGAAATTTGGCCTGATTCCTT
CCCAGACCTCGTCGAAATTTGGCTTGTGCTTCCAGGATAATATGATTTGA
CGGTTGGCCAATACCTAGACTAACATAATTGTAATTGTATAATAATAAGG
AGACAAATTAAGGTTCTCATTCACTTTTTTTACAGGTTACGTCTAATCGT
TGAAACTGCCGTTCAACATGGCTACAATAAGGTGTGTTTTTAAAACCTCA
ATTGTCGATGCTCAGTTAATTACAGCACAAAGTATTTCACTTATAGATAT
CTTTTCCGTGAGCACATTAACTCGCTCATTTTAATGAATATTACTTTCAC
TAGTTTTGATATTGTGTTTCCACTGCAGATTAATACATCTTAAATCAAAG
CTCCCGTACTTACAGTTGACAAATAAAAAGTTCGCTCAACAATCAAAATG
AAAATTTCCGAATAATCTGATACATGAACCAAGCTGTCCGTTAACTCTGT
AAGAAGTCTTTCGCGGGTGAAGCACAAGCTTGGTTTTGTCTTTTTTCAAA
ATGGCTGTACCGCAGCACTACCCGAATTTTTTCGAATTTTGCGCATTTGA
TTATTGAGCGAACTTTGGCTACGGTACAAGTTAATGAAATTTTCCTGTCT
CTCTTCAGATAATGCTTGGTGAAAACGCAACAACGCTATCGATGAAATTA
CTTTCCAACATTTCACAAGGACGAGGAATTTCGCTACCTAAAGATGTGGT
ATGTACGTTAGACTGCACACAATCCTGGAAAAGTTTTTATCAGGCTCGCA
AATTGACATCGCTTTCCAAAATGTTACGAAGCAAGTTTTTTGTGATGTCT
TACCTTGATATCCTTTTCCATTGAAATTTTAATGTGATGTCAACGATTCC
CAATTCAAAAACATTTCCTGAGAAAAAAAATACTAAGCAGATGTAATTTT
TTAAGTAGTTTCTCAATGCAATGCAATACAATCAAAATCTTTAACATCAC
ATTACGTCAGGAACTGGTTGCACAACCACGGAACAAATCAAGAGACTTTT
TGCCCGAAAATTTTGTTTCGTTTTTTGAATTTTCTCAATTTTTCACCACA
ACTTCCTTTTCTGCTCTCTTATGCTTTACGAATTGAACCATTTTTTTTAA
CTTTGTAGGCTGTTGGAGACGACAGATATCCCGATGTTATGGTTGTTCGA
CCAATGAGGTATCACCCAATCATTGCTCATATTATTTGTAACTTATTTAA
GGTTGCTGGTATGAAGAAGAAGAAAATTGAAAGAAGTTATTGCTTTGGCA
TCAGAAGAGGACGACGCATTGACTTACACAACCAACTTTCTGTTCATTTT
AATTCACAATTAGAATAGGTAGGACGGAAAGTGGGCCAGCTAAACCCAGA
GCTAAAAGCAACAAACTTTATTCATGCTATTTTGTTTTTGCTTTGTAGGG
AGCTTTCATCGAAAGAAGTTGTGATGTACAATCGTTTTGAAGACCTTCCC
TCGCTCATCTTACCCAACCTTCATACGATGGTGAGAAAAAACATTATTTT
CAACCAATCCCACTCAGCCTATTGGTACAACATTCTATTTAATATCAATA
CAGAGGGGTGGACGAACTTTTCCAGGTTAAAAATTTATCTTGAGAATTTT
TGGATACTCCCTAAAAAAAAGTTCGCAGAAATTTTACACCAATTGCTCAT
TCCTTCGTAGATAATGCTTTGTCATCTAACCCCTTGGGTAAAGTCAATTC
TAATCAAATCCCATTGAAAAATAAAAAAGAACTCTTGGAAATTCTTCTCA
GCATACACCCTGGAAAAGTTTGTCCACCCCCTTCTTATATCCAAAATGGA
ATAGCACATTTCAACCGTTGCCAGGTTTCTGGTATAGGTAACATAGGAAC
CTGTTCCCGTTTTTCAGGCTGAAACTGGAGCTAGTTTGCAAAGACAAACT
GAAGAATTTATCAATGGCTTACAGGTATTTTACAAATGTTTTTACATGGT
GAGATAAAACTGTCAGTGAATTTTCCTCCCGGGTTTGTCTTGTTCAACTA
CCTTTACGCCCCAATACGCCTCATCGCTACCTCATAATGATACTCCAAGC
TTTGGAACTCAAGCGGACCCAATCGAGCTTAACATACTGTATCTTAGCAT
AATAAGACATTGCATCATCATAACAATGCTTTTGTTTTCCTTTGCTAGGC
TTATTTCTCAACCATTATTAAAAAATAAATTGATATACCTTTATGCAGTA
ACTCTTGGTTTTTTTTAATTATTCTCTTTTTCAAGGTGGAATTTCCATCG
ACGGTCAGCACAGTTTTCAGGTAACTGCTAAATAATCATTTCAGCAAAAA
CGGGGATAAAATTTTAAAAAATTGAGGGCAGATCACAGATTTGGTTGGGA
ATAGTTGGTTGGAAATATTCATGATTTTTTTCTGATGTAATCTTTTGCTT
CAATTTTACAATATGTTTATATGTATTTCACTTTGCTTTGATTTTACAAA
TTGACCTACAATCCAAAGTCTTTGTTCTCATTTTCACGATTTTGTAAGTA
TTTTTGGGTAAATTAATTTCCCTTGGGTGTTTTAGAACCTGTGAAGCCTT
AAAACATTCTTAAATTGTTCTTAATAATTCGGCCATCAAAGCCTGTTGTT
CTTATTAAATTTGTTCTTATTAAAAAGCGTCCACGTAGATTGTTTTTTGG
ATCATCATTGTCTGAACTTTAATCATTTGTTATTTTCAGGACGGGTGACA
AGTTGTGTTCGAACGCCTCTTACGATAATAACAATGAAAAATGTGCATTT
TGTCAGGTACCCTATTTCATATCATTATGATATTTCATTTTGATATAATC
GAAAAGAAGTTAAAGGTCTGAGTAGCTTGATTTTTGGACCTACCTCCGGG
TACCCCGGTGGAAGTCCTTTAAATTAACCCATGTCCGTTCGTTCGTTCGT
TCGTTCGTCCGTTCGTTCGTCTGTTGCCAGCTTTTCTCGGGATTGGCTCA
TTAGTTTTTTCTGATTTTTTGCACAATGATGCAAAATGGCGTTGCCCAAA
ATGTGACGGAGCCCGATTTTCGGGAAAAAAAATTTTCCGGCCGAAAATGC
CGGAAATATCCCGGAAAAACTGGTTTTTTGCCACTTTCTCAAGATTTTAT
CATTAGTTTTTTCTGATTTTTTGCTCAAAGATGCGTATTAACAATGCCCA
AAACATGGCTGAGTCCGATTTTTGAGAAAAAAATTTTTCCGGCCGAAAGT
GCCGGAAATATGCCGGAAATCGCCGTTTTTTCTGGATTTTCATTGAACTT
TTTCCTTATAATTGGTTGTTTTTTCATTCAAAAACATTATTAATAGCAAT
GCCCACCATCAAGCATGTTTCAATTTTCAATAAAATTNNNNNNNNNNNNN
NNNNNNTCGGAACAACCTATTTTCGCCGGAAAGACAGTATTTCTTGAATT
TCTCGAGCTGTACTTTATATTTTTTTATGAAATTTTGCACACTGATGCAA
AATGACAATACCTAAAATGTGACGGGGCGCGATTTTCGAAAAACATTTTT
TTCCGGCCGAAAATGCCGGAAATATGCCGGAAAAACCGGTTTTTTTGACA
TTTTCTCGAATTTTCATCCTTATTTTTCTCTGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNTGCTCAAAACATGACCGAGTTCGATTTTTGAGAAAATGTTTTT
TCCGGCCAAAAAAGCCGGAAATTTTCGTTTTTGCAGATTTTCATTGGATT
TTTTCGTATCATGTCTTTGTTTTTTTCAAACAAAAACATCATTTATAATG
TCCACGATTGAGCATGGTTCAATTTTCAATGAAACTGATTTTGGTACAGG
AACTTTCTAAAAATCGCCAGAACAGCCGAGAATCGCCGGATTCCATGAAT
TTCTCGAGTTGTTCTCGTATTATTCTGCATTTTCATACTATTGTTCTCAT
TTTTCAATTATCTTATTACATCAATCTTCAGGTAGGTCCATTCAGCATGT
AGCTTGTTTAAATTAGATCTATAATGAGGCTTTTCATGATTTGTCGTGAG
TTACATAAACTTCCACCATTATGGAAGCAAACATTCGATTTGCGTAAGGG
ATCTCATCTACAGATTCGAACGTTTGCTTCTATAATGGTGGAAATAACGT
AATTTAACAAAACATGAAAAAAATTCTGTAAGATCTTGTTTTGATTAGCT
GAATTGATGCTATGACTCGAGGGATTAATTTGTGAGTTGAGAAGTTGTTT
TATAAGACTCCATGTTGTTACAGTTGCTATGCACCAACTATGGAGATAAG
AGACCGTACATTGTTTATGTATAGAATATTTCCCCACGAAACCATGAAAT
GTAATAGTTACTGGACATTTGCGAGTCCAATATGAGAAATATTTTACGAG
TTCCGAGATTGTTCCGTATAATTTACCAAGTCTTTAGGTGATAAAAATAT
ACGAAAATAATTTGGAACGAGCGATTGCAGGTTGCAGATATTTTTTTGGC
AGACAATACTTTAATGGGATAAATTTTCGCGGGGATTAATTTTCGCGGAT
TTCGCGGATTTGGGTGTCATCCGCGAAGATAAGTCCCATTGGAAATTTGA
GAAAGGCCCATCCGCGAAATATTTCTAAACAAAACTCAAAATATGTCAAA
TAAATACTATTTGAGTGGTTACTTGCATCANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNCCATCCGCGAAAATTAATCCCCGCGAAATC
TTAAAATTTCGCGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAATC
TTAAAATTTCGCGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAATC
TTAAAATTTCGCGGATGAGCTCAACCGCGAAATTTAATCCCCGCGAAAAT
TTATCCCATTAAAGTAAATAATGGCTTAATAAGTTTTGAATATATTAACA
GTACACAAAAGTGATGTGTTCATTCACTGTAAAAAACACAGTAGTCAAAG
TCACGATATTAGATAATCAGAAAGAGACTTTTGATAAAATTGATTATGGG
ATTGAAGTTTTGGAAAGTAGTGAGCATTGAAAGCAAGATCCCACCTAAAG
GTAAAATTATTGTTTTTTTTGCCATGTTTATTCGAAGTTCTTTTCCTTTT
GACCGAAAGATTTACTCTTTTTCATTGATGTTTTCAGGGCACTATATCGA
AAGAGAAGATGGAATTCAATGAACCGGTCGACGTCAGTTGCGGAAAGAAA
GGTGAAATTTTAATGTCGATATTTGTTACTCACGTTCGTTACACATCTGA
AAAATGAAAAACTTTCAGATAGAACGCCATAACATTTTACCTGGTAATTT
TATCACTAGGAGATTTTCTTTTTTACCATCTAGAAACTTATGACACATTT
TCATAGGTCAATTTCTACATTGTGAAATAAGGAAACTCATTTTACCACCT
AATTTGATTTTTTTCCTATGATTATTTCTTGTTAGTAAAAGCCACGACAA
CACTCCCTCTTCATCGATATAATTTTTTGCTTAACCCTAGCCTGTACTAG
ACGTCACGGCTTTTTTTCTACGCTGTAACGTCTATTCCACTTTGCGACTT
TTTCGAATGTTTTGAGCCCAGGTTTTCGGGCTCTAAACATTCGATTTTTT
GACGTCACTTTAAACGTTTGAAGCTCCTGTAGTATAAAAAAAATCGAATT
TGCGTCAAAACACTTGAAAGGCTTCTATTTTTCGAAAATCGTCAAAGTGG
AACTCACTAAGAAACGGGATGAAAAATCCCGGTTTTTGGTGAGGTACTCG
CTAGCTTAACCCTAGCTAGACTTATCATTACTCGCTGTGTGATATCATAA
GGTACATTGCATGCGGAGTCTGAAGCTACATTGGTTTCGGAAGGACAAGG
CGTCAGCGCTTCAAACCAGGTGTCCCCGGCTCGAATCCCCGCTCATTCCA
ATGTTTTGCTCAGTTCATACATAGCCGAGAAGTCGAAAGACTGTCTAAAA
ACCCTAGATTAATGGGTCATTCACATAAAATATTTTCTAATTTTTTAGGT
GGTTGTTGTGGGTCAAGCGATGAATGTTCAAGCAATAAATTCAAGTGAGT
TTTTTTAATGACCTATTAAGTATCGTCTTTTGAATCTCCAGCTTCCAAAA
AATGACCTTTCAACTTCGAGTTACATTCTTTCGATTATGTAATTTGACAA
GTGTTGGATATTCTTCACAATTCTATCAAGAGGTTTTTGTTTTTTTGCAG
TGTTGAAAGTTTTTCTGTCTCAGATTTCCATAGGCTTCTGCTCATCCTCT
TGAGGAAAAAGTTTCTTAAATGTATCTATAGAGGTCTGCGATTCAGAATA
GGATTTCCATGTCAAAGAGGCTTTTCCGTCTCAAAATTCGGCATAAATCA
ACCAACAAATCACCGAATTTCGAGAATATGTGAATTTGACCACTATACAG
TATTTCGTATTATCCATTTGAGTTCATTCAGATTTTTGGTTTTTAAGGTC
TCTACAATTTCTCGTTTCTGGTCAAAAAATGAGATGGTATTCATGATATG
CACCATTGCAATGTCTTCTGACATTACATCACGGACCCAACAGCTGGCTG
GTTGCAAGTGACGTAAAATCAGTCAATACATCACGTTCAATCAATCAGCT
GTTGGGTCCGTGGAAGACATTACAATAGTGCATATCATGAAAACAGTGTA
ATATGTTGTAAACGATTGCTGTTATTTGGATATTTTTCAGGTTAAATACT
GATGACATCAAAGCTAATTTATGTTATGGTGAGTTCTCATTTCTCAACAA
GATGTCTACTTTAAGGGCAGAAACTTTCGCAGGCAGAAACTTTCGTGAGA
CCGAAAAGTCGCGAAATTTTGCGTATTTAAGTTTCGCGACTTTTTGAAGG
AAATTTACGGACAAAACTTTCGCGGTTTTTTGTGAATGTTCAATTTTAGT
AGCAATAACTTTCGCGAGTGGCTAGTGAAAGTGAATAAAAAATTATTTCA
AATCTCATTTTTTTTCTTCAATTGAAAGACTGATATGCTAATAAATGAAA
GATAAACTATTTGCACTTCTTCCTCTCATTCCGAATCCTAGTCACTGCGA
TAAAATCGATAATATCGACTCTCCTCGGCTTTTAAAACTTGGAAAAAACT
TCACTTTTTGCGAATTTCAGTCCCTCACAGGGTCGATTTTTAAACTTTGG
CTCGGAAATACCGGTCAACTTGCAAAACTAGTACCCCTCCCCTCCTCGGG
ATCTTAAACAAAGAATCCAAGCAGATCAAAGAAATCGTTATCATATCCAA
TCAACTACTTTTTGGTTTTTTTTCAGGCTGCAATTTGACGTTTAAAGATA
TGGTAAGATCATTTCCTCCCTTGAGACTTTTATCCACAATGATCTCATTA
AACCTAGACCTTCAAAAGTCTATGTCCCAACAAAAAAATCTAGGGTTGAC
GCTTGTTCTAGTTCTTCGTTCTACTATTCGATACGCTCCATTATACGATA
TTATTACCGACCCAAAAAAATTTAAGCATTTTGATTGGTCGAGAACCAGC
GAGAACATCGAATTATTTGCGATATTTCATATTTCTCTAGTCTGTAAATA
TGACCGCGTTGACTTTTGGGGGACTGGGTAAGCGACGGGAGAAAAATCAA
AACAAACCAGCCGAAAAGAACTGACTGGGAGTCAAAGGGAAAAATGCAAC
AAAAATATTTTCAGATTAACTTTTACTTTGGAGTTCTCCCATAAAAGACA
CTAAAATCAAATGTTCTCTTGCAATACTCGATATTTTACTCGTTCCAAGA
TTTTACCGATATTTTTCCTCGCCTAAAGGCTCGGAAAAGTATTACGGAAA
AATCTCGGAAATCATAAAATATTTCTCGTATTGCACTCAAAGTCCTACGA
TAACTAGTACTTATCAAAAGTCAACGTCAACAAGAAACACTCTTCGACGC
TCTAACATTCGATACGCTCCATTACTCGAAAATTGAAAATAGAAAATTAA
TGAAGTAAAGAGCGCCAACTGGATCTTCATATTTTTTGAAGAAAACCTTT
TCCCTCTTTTATTCTCTCATACTAAAGTTTTTGAAGAAAACCTTTTCCCT
CTTTTATTCTCTCATACTAAAGTTTGTTTTGTTTAGAGCCTCAACGTGGC
ATCGTTTCCGTTACAAACATTAGAAACTATCTCAACCAATATTAAAAGGT
ATGAAAAGTTTTTTCTTGGTGCACGTTTAGGCTTTCTCTAAAATAAAACA
ATTTCCAATTTCCTAATTTCCTTCTAAATTCATTACCGGACTCCTCCCGG
TCACCAAAATCTAAACAATTTGTTAATTTCCATTTTCCGTCTCAGACAAA
AAACCTTTTACTTTGACCACCACTGCAACTCTCTTATGTCAAAAAACCAA
TGGGCTCCATTTTATTCTTGCCTTACCCTTTACAATAAGCTTACTGCGTA
TTATTTATAACTCATAGACGAAAAATTGGGACCTCATCTTCTTGTGAATC
CATTTCCAGTCCCCTCAGATGCCAACCGTGCAGTTAAGGGTTGATTGATG
AATTTATTTGCTTTTCTTTGTATTTTAGGGCTAAAATGAAAGAGACAATC
CAAGATTTTCTACTGGAATGACACTTCTACAAAAGCAAACTGATGAATAT
AAATCAAAACCACAATTAAAGTTCAACCAAAACCAAATACTTTACTGATA
ACTCTGGACTCTAGTTGCTAACACAGTGCGTCTCAAGATTTTCTACTGGA
ATGACACTGCTATAAAAGTTAATTGATGAATCTCAATAAGACAAGTGAAG
TCTCCTCCGACAGCTCTAGAGTCTAATTGCTAAAACAACGCATCTCAATA
ATACTTTGGATTGGTTAATATTCATGAAGTGACCATTGGTACCAGACTGG
TTTGATGTTTTATTTCGAAATTTAGGTCAAGCTGGAAGACGCTTGATTGG
AATGATTTTGTAAAGGGAACGTTTTTATTTTTCATAGCTTTTTTTATATA
TCGATGAGATTTTAAGTGAACTACTTGAAAAATATCATTTTATACTTAAA
AACTAA

Coding sequence (CDS) from alignment at sc0000044:143283..157538-

>TCONS_00004397 ID=TCONS_00004397|Name=TCONS_00004397|organism=Clytia hemisphaerica|type=CDS|length=1233bp|location=Sequence derived from alignment at sc0000044:143283..157538- (Clytia hemisphaerica)
ATGTGTGACGTCAATTTGGATAAACTTGAGGCTGAACAAGAAATGGTCAG
AAAAGCCAAGTTGAGAAATATGTCAGTGTGTATGAAATGCAAAATAGCCA
AACCAGCCGTCGTCATTCGTATCAATGATCCAATGTGCAAGGAATGTTTC
TTACAATATGCAACACACAAGTTCCGATCAACACTTGGGAAATCAAAACT
GGTGAAAGCTAATGACAAGGTGTTATTAGCAGTATCAGGCGGACATACAT
CCAGAGCAATGGTACACCTTGTCACTGAGGCGTTGAGTGAGAAAGCTCAC
AAACGATTGAGATTCTCACCTGGTATTGTTTTCATCGATGAGAGTTTTAC
ACTGAAGAACGATATTGAAAAAGAAACACTAAAGTTTCAAGAAGAAATGA
AGAAACATGGTTATCCATTTTACACTGTGCCAGTGCATCAGAATTCTACA
GGGAAAGATGAATTCCTGAAGAACTTTGAAACCGTATCCACATTAACTGC
AAAAACGGATTATATCGAAAAACTAAGGTTACGTCTAATCGTTGAAACTG
CCGTTCAACATGGCTACAATAAGATAATGCTTGGTGAAAACGCAACAACG
CTATCGATGAAATTACTTTCCAACATTTCACAAGGACGAGGAATTTCGCT
ACCTAAAGATGTGGCTGTTGGAGACGACAGATATCCCGATGTTATGGTTG
TTCGACCAATGAGGGAGCTTTCATCGAAAGAAGTTGTGATGTACAATCGT
TTTGAAGACCTTCCCTCGCTCATCTTACCCAACCTTCATACGATGGCTGA
AACTGGAGCTAGTTTGCAAAGACAAACTGAAGAATTTATCAATGGCTTAC
AGGTGGAATTTCCATCGACGGTCAGCACAGTTTTCAGGACGGGTGACAAG
TTGTGTTCGAACGCCTCTTACGATAATAACAATGAAAAATGTGCATTTTG
TCAGGGCACTATATCGAAAGAGAAGATGGAATTCAATGAACCGGTCGACG
TCAGTTGCGGAAAGAAAGGTGGTTGTTGTGGGTCAAGCGATGAATGTTCA
AGCAATAAATTCAAGTTAAATACTGATGACATCAAAGCTAATTTATGTTA
TGGCTGCAATTTGACGTTTAAAGATATGAGCCTCAACGTGGCATCGTTTC
CGTTACAAACATTAGAAACTATCTCAACCAATATTAAAAGGGCTAAAATG
AAAGAGACAATCCAAGATTTTCTACTGGAATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002458XLOC_002458Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004397-exon-sc0000044-1575043694:157385..157538TCONS_00004397-exon-sc0000044-1575043694:157385..157538Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:156650..156724TCONS_00004397-exon-sc0000044-1575043694:156650..156724Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:156101..156179TCONS_00004397-exon-sc0000044-1575043694:156101..156179Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:155769..155828TCONS_00004397-exon-sc0000044-1575043694:155769..155828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:154768..154828TCONS_00004397-exon-sc0000044-1575043694:154768..154828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:154214..154314TCONS_00004397-exon-sc0000044-1575043694:154214..154314Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:152759..152844TCONS_00004397-exon-sc0000044-1575043694:152759..152844Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:152458..152503TCONS_00004397-exon-sc0000044-1575043694:152458..152503Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:151941..152030TCONS_00004397-exon-sc0000044-1575043694:151941..152030Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:151481..151530TCONS_00004397-exon-sc0000044-1575043694:151481..151530Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:151159..151240TCONS_00004397-exon-sc0000044-1575043694:151159..151240Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:150715..150771TCONS_00004397-exon-sc0000044-1575043694:150715..150771Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:150369..150403TCONS_00004397-exon-sc0000044-1575043694:150369..150403Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:149883..149949TCONS_00004397-exon-sc0000044-1575043694:149883..149949Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:147088..147151TCONS_00004397-exon-sc0000044-1575043694:147088..147151Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:146245..146290TCONS_00004397-exon-sc0000044-1575043694:146245..146290Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:145561..145598TCONS_00004397-exon-sc0000044-1575043694:145561..145598Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:144987..145012TCONS_00004397-exon-sc0000044-1575043694:144987..145012Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:144141..144202TCONS_00004397-exon-sc0000044-1575043694:144141..144202Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1575043694:143283..143760TCONS_00004397-exon-sc0000044-1575043694:143283..143760Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:157385..157538TCONS_00004397-exon-sc0000044-1510915933:157385..157538Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:156650..156724TCONS_00004397-exon-sc0000044-1510915933:156650..156724Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:156101..156179TCONS_00004397-exon-sc0000044-1510915933:156101..156179Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:155769..155828TCONS_00004397-exon-sc0000044-1510915933:155769..155828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:154768..154828TCONS_00004397-exon-sc0000044-1510915933:154768..154828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:154214..154314TCONS_00004397-exon-sc0000044-1510915933:154214..154314Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:152759..152844TCONS_00004397-exon-sc0000044-1510915933:152759..152844Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:152458..152503TCONS_00004397-exon-sc0000044-1510915933:152458..152503Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:151941..152030TCONS_00004397-exon-sc0000044-1510915933:151941..152030Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:151481..151530TCONS_00004397-exon-sc0000044-1510915933:151481..151530Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:151159..151240TCONS_00004397-exon-sc0000044-1510915933:151159..151240Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:150715..150771TCONS_00004397-exon-sc0000044-1510915933:150715..150771Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:150369..150403TCONS_00004397-exon-sc0000044-1510915933:150369..150403Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:149883..149949TCONS_00004397-exon-sc0000044-1510915933:149883..149949Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:147088..147151TCONS_00004397-exon-sc0000044-1510915933:147088..147151Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:146245..146290TCONS_00004397-exon-sc0000044-1510915933:146245..146290Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:145561..145598TCONS_00004397-exon-sc0000044-1510915933:145561..145598Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:144987..145012TCONS_00004397-exon-sc0000044-1510915933:144987..145012Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:144141..144202TCONS_00004397-exon-sc0000044-1510915933:144141..144202Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1510915933:143283..143760TCONS_00004397-exon-sc0000044-1510915933:143283..143760Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:157385..157538TCONS_00004397-exon-sc0000044-1491911889:157385..157538Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:156650..156724TCONS_00004397-exon-sc0000044-1491911889:156650..156724Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:156101..156179TCONS_00004397-exon-sc0000044-1491911889:156101..156179Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:155769..155828TCONS_00004397-exon-sc0000044-1491911889:155769..155828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:154768..154828TCONS_00004397-exon-sc0000044-1491911889:154768..154828Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:154214..154314TCONS_00004397-exon-sc0000044-1491911889:154214..154314Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:152759..152844TCONS_00004397-exon-sc0000044-1491911889:152759..152844Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:152458..152503TCONS_00004397-exon-sc0000044-1491911889:152458..152503Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:151941..152030TCONS_00004397-exon-sc0000044-1491911889:151941..152030Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:151481..151530TCONS_00004397-exon-sc0000044-1491911889:151481..151530Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:151159..151240TCONS_00004397-exon-sc0000044-1491911889:151159..151240Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:150715..150771TCONS_00004397-exon-sc0000044-1491911889:150715..150771Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:150369..150403TCONS_00004397-exon-sc0000044-1491911889:150369..150403Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:149883..149949TCONS_00004397-exon-sc0000044-1491911889:149883..149949Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:147088..147151TCONS_00004397-exon-sc0000044-1491911889:147088..147151Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:146245..146290TCONS_00004397-exon-sc0000044-1491911889:146245..146290Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:145561..145598TCONS_00004397-exon-sc0000044-1491911889:145561..145598Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:144987..145012TCONS_00004397-exon-sc0000044-1491911889:144987..145012Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:144141..144202TCONS_00004397-exon-sc0000044-1491911889:144141..144202Clytia hemisphaericaexon
TCONS_00004397-exon-sc0000044-1491911889:143283..143760TCONS_00004397-exon-sc0000044-1491911889:143283..143760Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004397-proteinTCONS_00004397-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:143283..157538 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
34.2172	32.2721	117.784	135.747	16.5969	14.8003	20.1542	23.1163	18.7915	17.4393	20.6189	18.0873	22.452	21.9078	22.4489	23.6861	16.6542	21.9548	15.5191	14.8375	18.414	17.1204	37.551	32.682	24.3851	27.6046	12.3503	13.8849	18.9002	22.5996
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR014729Rossmann-like_a/b/a_fold
IPR019407CTU2
Vocabulary: Molecular Function
TermDefinition
GO:0000049tRNA binding
Vocabulary: Biological Process
TermDefinition
GO:0034227tRNA thio-modification
GO:0002098tRNA wobble uridine modification
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0034227 tRNA thio-modification
biological_process GO:0002098 tRNA wobble uridine modification
molecular_function GO:0000049 tRNA binding
Blast
[Close]
BLAST of TCONS_00004397 vs. Swiss-Prot (Human)
Match: CTU2 (Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sapiens GN=CTU2 PE=1 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 1.420e-35
Identity = 71/163 (43.56%), Postives = 102/163 (62.58%), Query Frame = 3 
Query:  564 FETVSTLTAKTDYIEKLRLRLIVETAVQHGYNKIMLGENATTLSMKLLSNISQGRGISLPKDVAVGDDRYPDVMVVRPMRELSSKEVVMYNRFEDLPSLILPNLHTMAETGASLQRQTEEFINGLQVEFPSTVSTVFRTGDKLC----SNASYDNNNEKCAFC 1040
            F +V TLTAK + ++ LR  LI+  A  HGY+K+M G++ T L++KL++N++ GRG  L  D    D+R+ DV+VVRPMR+ + KEV  YNR   +PS+  P + T A   AS+ R  E FI  LQ +FPSTVSTV+RT +KL        +  ++  +C  C
Sbjct:  229 FCSVRTLTAKEELLQTLRTHLILHMARAHGYSKVMTGDSCTRLAIKLMTNLALGRGAFLAWDTGFSDERHGDVVVVRPMRDHTLKEVAFYNRLFSVPSVFTPAVDTKAPEKASIHRLMEAFILRLQTQFPSTVSTVYRTSEKLVKGPRDGPAAGDSGPRCLLC 391

HSP 2 Score: 111.309 bits (277), Expect = 7.866e-26
Identity = 51/124 (41.13%), Postives = 78/124 (62.90%), Query Frame = 3 
Query:  168 CMKCKIAKPAVVIRINDPMCKECFLQYATHKFRSTLGKSKLVKANDKVLLAVSGGHTSRAMVHLVTEALSEKAHKRLRFSPGIVFIDESFTLKNDIEKETLKFQEE---MKKHGYPFYTVPVHQ 530
            C+KCK A+P VVIR  D  C++CF  +  HKFR+ LGK++L+   +KVLLA SGG +S +MV  V E LS+ + KRLRF  G++F+DE       +E+ +    E    ++  G+P++ V + +
Sbjct:   28 CVKCKEAQPVVVIRAGDAFCRDCFKAFYVHKFRAMLGKNRLIFPGEKVLLAWSGGPSSSSMVWQVLEGLSQDSAKRLRFVAGVIFVDEGAACGQSLEERSKTLAEVKPILQATGFPWHVVALEE 151
The following BLAST results are available for this feature:
BLAST of TCONS_00004397 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CTU21.420e-3543.56Cytoplasmic tRNA 2-thiolation protein 2 OS=Homo sa... [more]
back to top