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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004425 ID=TCONS_00004425|Name=TCONS_00004425|organism=Clytia hemisphaerica|type=transcript|length=2468bpRun BLAST on NCBI protein sequence of TCONS_00004425-protein >TCONS_00004425-protein ID=TCONS_00004425-protein|Name=TCONS_00004425-protein|organism=Clytia hemisphaerica|type=polypeptide|length=558bp XHMNLTFGGFFHGPGFAEEIFHTNDVKAQEIYKDDFVHVKVDLLQLHFKRRun BLAST on NCBI transcript from alignment at sc0000044:667064..676857- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004425 ID=TCONS_00004425|Name=TCONS_00004425|organism=Clytia hemisphaerica|type=transcript|length=9794bp|location=Sequence derived from alignment at sc0000044:667064..676857- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000044:667064..676857- >TCONS_00004425 ID=TCONS_00004425|Name=TCONS_00004425|organism=Clytia hemisphaerica|type=CDS|length=1677bp|location=Sequence derived from alignment at sc0000044:667064..676857- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
Blast
BLAST of TCONS_00004425 vs. Swiss-Prot (Human)
Match: SUZ12 (Polycomb protein SUZ12 OS=Homo sapiens GN=SUZ12 PE=1 SV=3) HSP 1 Score: 269.24 bits (687), Expect = 1.043e-77 Identity = 196/583 (33.62%), Postives = 290/583 (49.74%), Query Frame = 2
Query: 5 HMNLTFGGFFHGPGFAEEIFHTNDVKAQEIYKD-DFVHVKVDLLQLHFKRKKDVE-PITVVNLGNCKAPWNPRTQFLTPGTSVQITVPPDVFNENNKAYKTQILSISVSLNVXXXXXXXXXXXXXEAATEEPPAKRLRGSVTSESQVEEDTNTTTINGFEHADEKPVFDSNEAAYSAELIVFDRYKTCLLSDGDYXXXXXXXXXXXXSRKNNTFESKFKNK-LGPFAAFSFGPTIKFNLNWT-TSAPINILPAYKTLNQRYLEE-HQAHESQDEAVEP-------KSMTAANKTTKPKES-----SLPKVYYQFLYCHSTRQQTEAREGTSCPWCDLQCWTIYGLLRHLKSFHNRFSFVYTALKRSHRIDVSVNETFENSLGF---DGVRDIGFIDIDNAPIKRKPTSEILVGRRHVDVEDLKEFTEADKSDMNGAFSIVH-HKRSYFHSNNNQQIPDLGEFGYNSEDEGPPDWLKEKTGDMIEDFTDVNRGEKVLMKLWNLHVLESSYVADFMVALGCETFVQKYGHVILNEGLTRNFLIHLNNLLEFQVISQSHIVSAIKKLSQMKKNMK-----SVTNEE 1675
H+ LTF GFFH ND + + + V ++V L+++ K++KDV PI V G + P NP PG + V + F +N + S S+ V P + G + E+ D N A K + E + A++ VFD+ + L DG+YE+ + E S+K T+E+ K L PF FS GPT++F L WT + + P K L R E HQ E++ +V+P +S+T +T K K++ +++YQFLY ++TRQQTEAR+ CPWC L C +Y LL+HLK H+RF F Y + RIDVS+NE ++ S D R GF N P+KR P + ILV R + EF E++ ++ + H R YFHS+ + E +SEDE P+WL+EKT IE+F+DVN GEK +MKLWNLHV++ ++AD + C FV+ YG I+ + L RNF++HL ++ +F +IS I A+ KL +M++ ++ S NEE
Sbjct: 156 HLQLTFTGFFH----------KNDKPSPNSENEQNSVTLEVLLVKVCHKKRKDVSCPIRQVPTGKKQVPLNPDLNQTKPGNFPSLAVSSNEFEPSNSHM---VKSYSLLFRVT-----------------RPGRREFNGMINGETNENIDVNEELP-----ARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYEVAMQEMEECPISKKRATWETILDGKRLPPFETFSQGPTLQFTLRWTGETNDKSTAPIAKPLATRNSESLHQ--ENKPGSVKPTQTIAVKESLTTDLQTRKEKDTPNENRQKLRIFYQFLYNNNTRQQTEARDDLHCPWCTLNCRKLYSLLKHLKLCHSRFIFNYVYHPKGARIDVSINECYDGSYAGNPQDIHRQPGFAFSRNGPVKRTPITHILVCRPKRTKASMSEFLESEDGEVEQQRTYSSGHNRLYFHSDTCLPLRP-QEMEVDSEDEKDPEWLREKTITQIEEFSDVNEGEKEVMKLWNLHVMKHGFIADNQMNHACMLFVENYGQKIIKKNLCRNFMLHLVSMHDFNLISIMSIDKAVTKLREMQQKLEKGESASPANEE 700 The following BLAST results are available for this feature:
BLAST of TCONS_00004425 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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