TCONS_00004447 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004447
Unique NameTCONS_00004447
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length347

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004447 ID=TCONS_00004447|Name=TCONS_00004447|organism=Clytia hemisphaerica|type=transcript|length=347bp
gctttttcattTTAGTACTTACAGACTACTTGTTAAGGAACTTGATTACT
CTAGTCTCATTGTGGCTAAGTGAACCTCTCCAACACCCTTTTTTATGAAT
ACAACAGTAACACTAACCAGGCAGGAACTCTGCTCAAAAGTACCCAGCAA
tataacctttttgaaaaaattttgacactatttttagaataataacatat
cataataatcaataattctgacacttttaatATCTCACGATAACCTAATA
CAGATTTTCAAGTCATACCAAAAATTTTAGTCAACATAATATGCAGTTGA
CTAAAATTTTTGGTACGgtttgaaaaccatttttaggTTATTGTGAG
Run BLAST on NCBI

transcript from alignment at sc0000044:330898..331244

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004447 ID=TCONS_00004447|Name=TCONS_00004447|organism=Clytia hemisphaerica|type=transcript|length=347bp|location=Sequence derived from alignment at sc0000044:330898..331244 (Clytia hemisphaerica)
CTCACAATAAcctaaaaatggttttcaaacCGTACCAAAAATTTTAGTCA
ACTGCATATTATGTTGACTAAAATTTTTGGTATGACTTGAAAATCTGTAT
TAGGTTATCGTGAGATattaaaagtgtcagaattattgattattatgata
tgttattattctaaaaatagtgtcaaaattttttcaaaaaggttataTTG
CTGGGTACTTTTGAGCAGAGTTCCTGCCTGGTTAGTGTTACTGTTGTATT
CATAAAAAAGGGTGTTGGAGAGGTTCACTTAGCCACAATGAGACTAGAGT
AATCAAGTTCCTTAACAAGTAGTCTGTAAGTACTAAaatgaaaaagc
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002494XLOC_002494Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004447-exon-sc0000044-1491911889:330898..331244TCONS_00004447-exon-sc0000044-1491911889:330898..331244Clytia hemisphaericaexon
TCONS_00004447-exon-sc0000044-1510915933:330898..331244TCONS_00004447-exon-sc0000044-1510915933:330898..331244Clytia hemisphaericaexon
TCONS_00004447-exon-sc0000044-1575043694:330898..331244TCONS_00004447-exon-sc0000044-1575043694:330898..331244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000044supercontigsc0000044:330898..331244 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.28656	0	0.330393	2.34386	0.410218	0.953433	1.79112	2.88462	1.83522	0.555837	2.64268	0.407173	0.910546	3.1022	2.43	1.29186	1.25922	0.252206	0.856851	0	2.40791	1.40238	0.38625	1.51072	3.14447	1.97073	1.70267	2.41814	1.78002	0.931829
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004447 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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