TCONS_00004538 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004538
Unique NameTCONS_00004538
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1706

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004538 ID=TCONS_00004538|Name=TCONS_00004538|organism=Clytia hemisphaerica|type=transcript|length=1706bp
gaaaaaaattcatacccTTCATTATGTATGTaatgtaaattaaaaaaaac
acacaaaacgAACTAAAAAAATGGCATTCGATGATGAAGAAAGTCAAAGT
GATTATGGTTCATTGATATCACCAAGAAAAACTAAAGAGagGACAGCTAC
AATCAAGACGCTCAAAGCTGACGATATCAAACTGTTACAGCTTGAGGATG
AAAATGCATGGCGAATCAATCAAGTATCAAATTCTATGAAAGAGCTGGTT
AGAGTGCGTCAAATCTTGGACAACAGCGAGCACGACCGTTTAAATGAGAG
ACGTGAAAAACTGTCAACTGTGCATAAATTGATTGACCTAACCAAAGTAA
AGAATCAAATTGAAAGACGGCTACAAGATTTTAATAATCAGACTACAGAT
GAAGAATCGAAGTACACCCGTTTATATGGTAAATACGAACAAGCTTTGGA
GAAGATCAAAGAACTTCGCCAGTTGACAGCATCCGATACTGAGCATGCGC
AGAAAGATTATCTTGATGAACTTGCCAATATCAAGgcGTCTTATAAACGG
GACATGCGTAGTGCGGAAGAAGAAAGCAAGAAATTGAAACAATCATTGGA
AGAACTGTATTCAAGAAGACAAAATAATACGACAGCCACTGACAAAAATA
ATACGCTCTCTGATGTTGAGAATTTAAAGGATGACTTACCAGCGATCGTC
GAAGCTTTATCCAAAGAAGGGATTGAAGTTGAAAATGAGTCATCAGGCAA
ACAAGTGCTGGCTGATCTTTTCAAAGAATACAAGCGTATATTCAACCGGT
TAAAACACAATAACATTGGGTTTACTCATTCAGATGAGGAATATAAGGTA
CTTCAGCGTGAGCTGAGAAGCGAAAAGACAAAAAATGAGAAGAATACAAA
ACAACTACAAGAAAAAGACGATTCTATTGGTATTCTAAAAGGTCAAATCG
ATACTTTGTTAAAAGAACAGAAAGAGAAGCACCTTCAAATGCAATCATTA
CACGATGAAAGTGAATCCTCCAAAGAAGGAATCGATGACATCAAAGCGCA
ATTGAAAAAATCTCGCGAAACATTAAGTAAACAGACTGCTAAGCTTAATG
TGACTGAAGAGGATTTGACGAGAGTTACAGACGAACTTCACGTGACCGAA
GCAGAACACGAGCGTACGAAACGACAGATAGCCGTCAAAGATGCTGAAAT
TGCACGCCTCAAACAAGATCTTGAAAATGAGAGTGATCGACTGAACAAAG
AGATCGAACGTGTAAAGAAATTACAAGAATTACTGGAACAGAAAGAACGT
TCGAATGTTGATGGAGACGACCACGTGTTCACTCTTGAGTTGAAAGTCAA
AGAGCTAGAGAAAGAGCTACATACTTTCCATCAAAAAAACGAGCGGCTGG
TTTCCGAGCTAGATGAAACTTTACAAAGCAGAGACGACTTGCAAAACCAT
TTGAATGAACGAAAAACTGAATTTTCGAAACAAAATACAACTATAAAGAC
CCTTCAAACTAAGAATGAAGAACTATCAAGAGATCTTGAAGAGAAGAGAA
ATTCTTTCATGGAGCTTTCACAAAAGCTTGATGAAACATCAACAGAACTA
TTAACAACTAAAGATCTTCTTATGGAAAAAGACGAGGAAGTGAAACAGGG
TCAATTGCAACTCTCACAAATTTCTGAAGAATTGACTTTAAACGATACAT
TGAAGG
Run BLAST on NCBI

protein sequence of TCONS_00004538-protein

>TCONS_00004538-protein ID=TCONS_00004538-protein|Name=TCONS_00004538-protein|organism=Clytia hemisphaerica|type=polypeptide|length=545bp
MAFDDEESQSDYGSLISPRKTKERTATIKTLKADDIKLLQLEDENAWRIN
QVSNSMKELVRVRQILDNSEHDRLNERREKLSTVHKLIDLTKVKNQIERR
LQDFNNQTTDEESKYTRLYGKYEQALEKIKELRQLTASDTEHAQKDYLDE
LANIKASYKRDMRSAEEESKKLKQSLEELYSRRQNNTTATDKNNTLSDVE
NLKDDLPAIVEALSKEGIEVENESSGKQVLADLFKEYKRIFNRLKHNNIG
FTHSDEEYKVLQRELRSEKTKNEKNTKQLQEKDDSIGILKGQIDTLLKEQ
KEKHLQMQSLHDESESSKEGIDDIKAQLKKSRETLSKQTAKLNVTEEDLT
RVTDELHVTEAEHERTKRQIAVKDAEIARLKQDLENESDRLNKEIERVKK
LQELLEQKERSNVDGDDHVFTLELKVKELEKELHTFHQKNERLVSELDET
LQSRDDLQNHLNERKTEFSKQNTTIKTLQTKNEELSRDLEEKRNSFMELS
QKLDETSTELLTTKDLLMEKDEEVKQGQLQLSQISEELTLNDTLK
Run BLAST on NCBI

transcript from alignment at sc0000045:16137..28820-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004538 ID=TCONS_00004538|Name=TCONS_00004538|organism=Clytia hemisphaerica|type=transcript|length=12684bp|location=Sequence derived from alignment at sc0000045:16137..28820- (Clytia hemisphaerica)
GAAAAAAATTCATACCCTTCATTATGTATGTAATGTAAATTAAAAAAAAC
ACACAAAACGAACTAAAAAAATGGCATTCGATGATGAAGAAAGTCAAAGT
GATTATGGTTCATTGATATCACCAAGAAAAACTAAAGAGGTATAGTGTAG
CTCTGGTTAAGGAGGCCCAATTTTTGCGCCACATATTTTATTTGTAGGCA
AAAACTTGGCAGTTGAAAGCTTTGTTTGAAAATATTAAAAGAAGTCATTA
CATTGAAGTCAAAGAAGGCCAGTGTATTAACTTNATGTAGCTCAGGTTAA
GAAGGCCCAATTTTTGCGCCACCTATTTTATATGTAGGCAAAAACTTGGC
AGTTGAAAGCTTTGTTTGAAAATATTAAAAGAAGTCATTACATTGAAGTC
AAAGAAGGCCAGTGTATTAACTTTATTTCTGCACTTTTATTCACAAGTAG
CTAAAGGCAGGGTTATTTATATTGGACTGTCTAGACCAGACCTTAGATAT
TATGACATCTCAGAAGATTTTCTATATGTAAAAGTAATTTTTTGATTCTA
TTGGGAAATTTTGCCATTCTTAGGGAAATCTGTAATTTTTGAATAAACGT
CCCTTGTGGTTTAATGGTTCTGACATCATTGCCTTTTCCTGGGAGATGAA
GCTCAAGTTTGATAACCACTGTGTCATAACGATTCAATAATCAAGTGAAA
TTATATTTTTATTAAAGAAAAACATAGTATGTACAGGTATGTATCGCTTT
TTTCTTTGAAGAGGACAGCTACAATCAAGACGCTCAAAGCTGACGATATC
AAACTGTTACAGCTTGAGGATGAAAATGCATGGCGAATCAATCAAGTATC
AAATTCTATGGTATGTTTATTCATTATTTAACCTACTTCCAAAAATCTAA
AAATTTTAAGCATGTAGACAAACAATAGACTCCTCCTCCAACTTATCTGC
CAGCTTGATTTTAACTTTTTTGAAATTTTGAAATGGCTGTACCACAGCAC
TATCCGAAATTTTGCGATTTTTTGTTTCTTTATTGCCAACTTTAGGATTG
TTAGACGTAGTACTGTGTTTATTATTTATTCCCAATCTCTCTATCTTGTT
AATTTAAAGTTTGTATATAAAATATAGAGACAGGCTTTATACGAGCCTAT
GTTATTATAATAATGGTGAAAATTTTAAATAACATAATTTTAAAGGTTTT
ATTTTTACATAAGTGTTCCCGTTTCATATTAGACACATGTTTCATATCAG
GACAGTGTCCCCTTATTGTTATAATATGCTAATAAGCCAAAAAACGTTTT
TGTTTCCTTTTTCTGACCAATCTTGCTCCACATCCGTGTCAATCCAATGT
GAAAAAGCTCGTGAAAAATTGATGCGTAAGCAATCGATATCACCCTTATT
TAAAAACAAATCCTTTAATTATAAACTTATAATTTCACTTATGATTTTTC
ATTTTCACAAATCTAATAGTTTCTACGAAACGTTTTAAAAATACAAAGTT
CTTTGAAAGCTACTCATTTTCATAATGTACATTTTATTCAATTTCTAGAA
AGAGCTGGTTAGAGTGCGTCAAATCTTGGACAACAGCGAGCACGACCGTT
TAAATGAGAGACGTGAAAAACTGTCAACTGTGCATAAATTGATTGACCTA
ACCAAAGTAAAGAATCAAATTGAAAGACGGCTACAAGATTTTAATAATCA
GACTACAGATGAAGAATCGAAGGTATTTATTCCAGATATGTTTTTTGTAG
TTTCCAGTCAGTAGGGTGATGCGAAAAAGTTTCTGGATGGCCATGTTGTA
GATCATTGCGCCTTTTTGAGAGATATTTTGTCTTTAACATTCTGAACCGC
TTTAAAAAGTTTTCTAAGTAAAAATCTGCGAGCATAGTAAGCGAAAATGA
TATATGAACTGACAAGGGTCGCCATTTGTTGGTGTTGTGTTTCAAATGTC
AATTATTTGACCTGAAAAGTCTTTTTTGCGCCCTTTAATTTTTTGTGCCT
CATAGCAAAAGGGCTCCGCTGGGAGGCGGCTGTCTCGTGCAATCACGTCA
CTAGTTCAAATCCTTCTCCAATTTTCTAGTTTTGAAGACTTTGTACTCTG
TACAAAACGGTACTTGATGCCTCTCTGCTTGACACTCAGCTATTACCCAG
AGAAAGAGTGATGCTCTCCCCTACCATTTGGGTAGATAGCTAATGAAGGG
GAGTCTTTTGGGTCGCCTCTGACTTCGGTCGCACTCTTCCTTACTTATTA
AGACGGATGATACATGCAATACATACATTAACCATGGTTCGAACACCTCC
CCCTCCCCCCTTTCTAAAGTGGGATTGGGAAGGGAGTTTTTCTTAAAAAG
AGGAATTTCCTGCATTCTTTCGTTCACCTAGCATGCTAGAATGTTGAACC
TTATCTCCCAACCCGCGAAAATATCCGAATCGGTAAAAAAATTTATCTGA
AAACAAGCCCTTTGACATATGAATATAAAAGACTGCTGTGCTCAGATTGG
TAGGAACATCTTTATATCCGAACACGTTTTGAATATAAGATCAAAGTATA
TAAGATTTTAAGAACAAAAGATGTGAAGGCCAGAAATCTCAGAACATTAT
AAGAACATTTCAAGGCTTCGCAGATTATACAAAAAGTAATTTCTTAAGAA
CTAAAATAATAAAAGATAAAAGACTGGAAAATAAGAACACTTTCAGAACA
TTTTTAAGCTTAAAAGACCGCTGAGAGATCATTGACGTTCTTATAAAAAA
CGTGCATTTGTTAGCTGTTGAATGTATCTAGGTATCATTTATTTAATGGT
GCATTCCATTTGGATTTTCCTGTGTTTGTTTCATGTATACACGTTTTTTT
TTTTAAGAAACACACTTTTAAGAAACATGAGGCTCAGAATGCCTAAAAAC
TAAGAAACATCCAAGAAACATGCTGAGGCTGAGAATGAGAAAAAAACATT
CTTTAATTCGTTTTTTTAAGAACCTTCCAATCCAGCCTTTTATAAGGCTG
ATTATGCCAAAAAGTTTAGAAACATGTAAGAAACATTTAAGGCTAAAAAG
GCCGATTTCTTAAGAAACATTGAGGCTGCTTGGTAAAACTAGTTTCTTAA
AAAAAAAAAACGTGTATCTTCATCAATCTTTAAATTTGAGTCATGAATCG
CAATTCACCTTAAATATTATTATTTTCAACTTTTTTCGTGTTTCTTTTCT
TACGATTTTTCCTTTCCTACTGGAAAAACTATGCTTAGTTAGCTGTTCTT
ATTTTGCTGGGTATGCTTATTTGCTGAGCTTTAATTTGTCTGTTACAGGG
AATATTCTCAACTTCAGTTGAGCTACAATCTGACAATGTCTGTGTGTCTG
TGTGTGTGTGTCTGTCTGTCTGTCACAAAAACTTTAGGGCAGCCTGGAGA
CTTCAAAAGTGGTCGGATTAGGTTGAAATTTGGCACACTTGTTCCTTAGG
TAAATATCTGGGGGTGTTTTTTTCATTTTTTGAAAATTTTGATTTTTGGG
GCCTGGGGACGAGTTTTTCGCCAAAACGAGGCTAAAACTTTGGGGCAGCC
TGGAGACTTCAAAAATTGTCGGATTTGGCTAAAATTTGGCACACTTATTC
ATTGGGTGAATATCTGGGGGTCTACAATTGGGCGTATGAAGAATTTGAAG
ACACTGGAGTTGAGCCCAGTGCGTTGCGCACGTTCAACTATATTTGAAGC
CAAGTCTGTATTCAGGGATATTCGTCTTGTTTCCAATCTCTTTTCTTTAG
ATTTTCCATTTCTGCTTGCTAGTTTTTGCTTCGGTTTTAGCTGATCTTTT
TTTACTGATATTGTTTATGTGCTGTGCTTTAAAACTAAGTTAGTTGTACT
TAAATGGAGGTTGTAATCGCTATGAAAATATGCTGAGCTTGCGAAAATAA
TACAGTTTTTGAAATGATTCATCAAAACAAAACAGTGCGCGCCACGTTAG
TTGAAAGCCTGGATGTAGACGAAACAAATGGTCTACATTTTGCATGGTGA
GTAAATTGCATCTGATTTTGCAAGATCAGCAAACAGCTTCATTATGTATT
GATTTATATCAGTCCTATATCACAGAACCGCTGGGAGCCCAGCGCCACTG
GAAAATTTGGCCAAAATTCCAGCCCTCCTGGGAAATTTCGTTCAAATTTC
ATCCAAATTTCATCATGAAAAAATTGCACTCCAAAACCACCCCTCTGGGT
TTTTTAAGCTTGGAACAATAGAATCTCTATCCCCATTGGGATTACGATGG
AAAATTTTATCCCTGCTGGTGGGAAAAAGTTTTACCGGGGCTGTGAAACA
GGGGTGTTAAAGTTTTAGAATTATGTTTTGTTAAAACTGCAGCGGTCTGC
AGGGAAATTTGGCTTGTGTGAAACAATGAAGATATAGAGAATCTTCAATG
TTATTTCATAAAATCATTATGAGGACTTGTGGTGAAGAAAAAAATATTTT
GTGTTATACGTATAACAAGAAATGAAACTTGTTTTTGCTTTAGTGTCCTG
TTTCTAGTTTTAGTTATAGAAACCAAGCTTTATTAAAATAGTCGATATCT
CTCGTCATTTTAGTATACCCATTTATAATTCTTTCTGTCTCCTCTGGTGG
TGATGAAAAATAAGAAGTTCTTGAGGCACATTTGGATGATCAAGGGCATC
AAGTGGCTAAACTTTTTGAGTTTTTTTTCTGTTCATTCGTTCGTCATTAA
ATCTGTTTTTATATTTAAAAATGGTTGGATCAAAAGATTCCTAAAGTCAA
ATATGCTTCTAGTTTCTATACACTTAACTCGCTCGCTATTTCAAACTGCT
ATCATTCAGTGAGAGTAAACTGTTGGGCTAGGGGCTGAATTATTTTGACG
ATCAGGCTAGAATTTGAGTATTAGCGAGTTTATATAATGGCACTGTTGAT
TACGGTGGGGTGACTGAAGGAATAACCCGTACACGCTTTTTTTATAAGAA
TACACTTTATAAGAATGTCCATGATGAAAATGGCTAAAAAATTAAGAATA
TGGTAAGAATATTACCATCATAGAATTTAGCAACTGAACCTAAGAATGCC
ATTTTTAATGCATTTTAACCTGTAGATTGCCAATTTCGATCCTAACCTAA
GAATACCATAAGAATATTTTGGGATGATTTTCGCCAAAAAGTTAAGAATA
TCCATGATGAAATGAAAAAACAACATTCTTATAAAAAAAAGCGTGTAGTT
TTGACCTGCAAATCGAGGACGGTAAAATTGCTGTTTTACCATGTCGTCTT
CAGTCAATCATCAGAAGCTATGACAGGTTGGATTTAGTTCGATTGATTTA
TTTATGTTCGGACGTTCTTTATCTCGTCAAAAGCAAAAAAAAACGCCCAC
TATGTATAAATTAAAAAAATATTCACAAGACATTGGCAGTAAGATAGCAA
TTTATGGTAATATTGCTCGATGTGGTGATGTTGAGTTTTTCACCATTGCA
AGGGAAGAACTGTTTATGAAATTCTGGTTTTGTCAGGTACAGTCTATATA
CTTAAACAACTAAAGATCATATGGCTATGGAGTTGTATATCTGACAGCTC
TATATGTCCGGGTTGTTCCGGTACAGTCTATTTAAATGGGTAAAAACTTC
CTAAATTCTAAGAAAGTACATGTCGGGGTTTTGTCAGGCACAGTCTACAT
ATTTAAACGACTATAAAGATCTTAGGCGCTATAAAAATAGCGAATAAAAT
AAAATATCGTATGCCGAATATTCACTGGCGTCCGTCAGTCAACGGTGCTG
ATAGTAATGTAACGAAACCTGGGATGCGGAGGGATGAGGTTGATTGATCG
TCATTTACCTGAAAATTTCGTCACAACCTCGTTTCCTGCGTATGATCGGC
TTTTCGTTTCTTACTGATAGCGGCGGTACGTGAAGAAGTTTTCCCTGTTG
AAAACCTTTCTTTCACAAAAGTGAAGAACTTTCGGCCTTAACTTTAATTT
TATCCTGCGAAAAGTTTTACCCCACTAAGTTTTACCCATATGTCCATTTT
CATGTTTTAGTACACCCGTTTATATGGTAAATACGAACAAGCTTTGGAGA
AGATCAAAGAACTTCGCCAGTTGACAGCATCCGATACTGAGCATGCGCAG
AAAGATTATCTTGATGAACTTGCCAATATCAAGGTAATTTTCAATCTTAT
AACTTTGCAATGATGTTTTAATTATACAGTGGAGTCTCCATGACAAGGAC
ATTTAGAGTTATTGAGTAAGGTTTATATACGACCATGGATTTATTATAGA
GACTCTGGATAAACATCAAATGAAACGGTGGAGAGAGAAGTATTGTCTTT
CTATTGTTTCAGAAAACAATTGATGTTCTAGCTTTGTCCGCAAAGGACAA
CTGTCATGGTGGCTCGAAGGACTCTGATTTTGAAAAATGATTAATACTCG
AATTTTTAAAAAGTTTTCTAACTTTTTCTATTCGTACTTTTGCTGGCCAA
AAGTTTGAAAATAAATGCTAGAATACCAAACGGATACATTTATGAAATCT
GGTGTGAGAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNATGAGTAAAATCAAACAAAATGCTTATAATGACACGAAATTTT
GAATTGGGAATATCTTTCCAATATTTCTCCGAGAAGAGCTGAGATTGACA
TATATTAGATAGCTCCATAGCTCCACTGTGGTATGAAAATCTTTTGGTGG
CACGTGGTGGCACGGTGGATTTTTTGAGGTTGAAGTTTAAAAATTTCTGG
TGTCAATATTCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNAGAAATGCAATTAAAATAATA
CGGAAAATCATTTAATGGTGGAAGGAGGGTGAACAATAATGTCATTACTG
CGGACAAGGCTTGTACATGAGAAATTGACAAAAATCAGCTCATTGTTTTT
CCAGTGTCTATAATAATTCCATGATACGACTGAAGGGACCTTTTTCGAGT
TAAGGGAACATTCGACTTATAGAGGTTCGAGTTAAAGCGATATTGTATAC
TACAGTGAGGCATCGAATGGCCTTGAAAATAAGATCGCAATCATCCATCC
GTAACAGCCCGACAATTAATATAAAAGGAAAAAGAAACTCTGATCGACTT
ACGAGATAAGAATTTTCTGACTTCAAAGCACATTAACAGCTAAATTATTA
TAAAAAACACAATTATCACTTTTCATTTCTTGTGTCTTTGTTGAGCCAAA
ATGTGTTAATTTTTCTCTCAAAATTTTTTGAATGAAAACACTTTGTTTTT
GTGAAAATGATCTTGAAGGTGATCATCAAAAAGGATAAACCAGAAAATCG
ATGAACGAGAATATTTATTTCGAATCACTTCGTCATATTTCCACGTAGAA
TTTGGGAGTCATGGTATGGTTAGTTGTCTCTACTCAAATTAATTCAAGGG
TAGTCTTCGATTTTTTTTATTTCGATTTTAACAGTTGTAAGAAAGCTTTT
TGCAATTTTTGAGCATCGAGTACAAGCTGTACCAGTTCAGGGCCCCTTTT
CGTAGTTTCCATCCCGCCTAAGGATGGGGTAAGATCACACACCACATTTT
ACCAGAGTGTCCACCTAAATGGGTTGAAAGAATGAAAAACGAGTCAAGTT
CATAATTATTCATCCTATCGCTAGAAAATTCATCGGTGAAAAAATTATTC
AGCAGAAAATATTTGTCGGTAAAATATACGTCATCAATCCGATTTTTCCG
TCACTTTTTGCCGACAAATTAAGTATCAACTGATAAGGTGAAGTTCTGAG
GGATCAAAAACGGTAGCCAATAGTTGACGAATTTCACTTTTTTTAATTAT
TTTTGTTTTTAATTTTCAGGCGTCTTATAAACGGGACATGCGTAGTGCGG
AAGAAGAAAGCAAGAAATTGAAACAATCATTGGAAGAACTGTATTCAAGA
AGACAAAATAATACGACAGCCACTGACAAAAATAATACGCTCTCTGATGT
TGAGAATTTAAAGGTAAGAAATACCTAGTGTGTATATTTTAGCAGGTGCT
AAATTTCCGCGAGATTTTAGGCACAATTTCACAAATTTAATTATTGTTTT
ATTTTAATTTAGCTTTATTTTCTCTAAAACACAAAATTGCGAAATGAAAT
TGACGGGGAAAATTCTCACAAAATTGCGAAATGAAATTCACGGGGAAAAT
TCTCACAAAATTGCGAAATTTTTGAAAATAGAAGAGAAATTAATTTTTTT
AGGGATCAGTGATACGTTGATACGTTCGACTTTTTAAGAATCTTTCAGTA
TTCTGTATGAAAAATTAATTAATTAAAAATCAAAATTTAATTAATAATAT
CAAGTACTATTTTGGAATTTTTGGTATGATCCAGCTAGGGATTAAACCCA
CGACATCGCGCACCGTAGCCGAATGGTTTACCTTTTCATTAAAGTCACTC
AAATATCAATAAGATAGCAATTCTCATATTTTCCTTTAGGATGACTTACC
AGCGATCGTCGAAGCTTTATCCAAAGAAGGGATTGAAGTTGAAAATGAGT
CATCAGGCAAACAAGTGCTGGCTGATCTTTTCAAAGAATACAAGCGTATA
TTCAACCGGTTAAAACACAATAACATTGGGTTTACTCATTCAGATGAGGA
ATATAAGGTACATTTTACTGATATCTTCATTTGTTATGGATCTTAGATGG
ACGTTGTTTTGGCGTTCTGGGTTAGATTTATTCCGCCAAGCGCTGGAACT
TCTATTTTCACTATAGTCAACAAACACCTACAATTACTTCTTCGTGAAAG
TTGTTATGAATATCTTGATCAAGATTCTTACGTCTGTACGAGACAGAAAG
AATTCAAAATAACCGACGTATGAAAGAGCCTTTTTGGACCTACCCCGGTG
GGGTGGAGGTCCTATAAATTAACCCATGTTCGTTAGTTAGTTAGTTACCA
GCTTTCCTCGAGATTGGCTCATTCAAATTTTCTGATTTTTTGCAGAAAGG
TGCATGACTATAAACCCTCGAATGTGACAGAGCCGGATTTTCGAAAAAAA
AGTTTTTGGGCAAATTTAGGCCAAAAAACGGCTAAAAAACGGGTTTTTTG
GACTTTGTGAAAAATTGGACTTTTTCTGATTTTTTGCATGAAAGTAGGGT
ACCATCATAGGTAAAAGATGGCTCAAGCAGATTTTTTCAAAAAAATTTTG
TTGGCTCAAAAAACGCATGTTTATCTATAAGAATCACTATTAATAAGCAT
ACATCAATGTTCTTAGTTAAATTACTCAATTTTTTCATGAGATATATGTT
TTTTTTGCTCATGAGGGCTTACTTTTGAAAAATGTATGTCTTTAGACATG
AAATTTTGGTTTCTTGGCGTGTTTTTTTATAAGAAACAAACGACTAATTT
TAATAGATCGTCACTATGTTCTGAATGATTGTTTAATGGTCACGTAGATA
TCAATTATATATGTGTTAAATGCATAACCAGGTAGGTCCATAAAAGTATC
ACTTGTTCACCTTGAATTTCTGCCCTATTTTGCAGAATTTGAAAAAGCAT
AGCAAATCTTTGTGTGAATTTGGAATTATATTGGACACGAACAACTTAGG
TTTGAACACTTACTGTTTTCATTAATCCATTCATTCATTCAATATTGCAG
GGACTTCAGCGTGAGCTGAGAAGCGAAAAGACAAAAAATGAGAAGAATAC
AAAACAACTACAAGAAAAAGACGATTCTATTGGTATTCTAAAAGGGTATA
TGAAATTAAAAAAAGTCATCTTAAGTTATTTAAAAATGTTTTTTTCGGAG
CCCGAAAACTTGTGCTCCGAACAATTGAAAAAGTCGCAAAGTGGAATATA
GACGTTACTGCATAGAGAAAAAATGCCGTAGCGTCTAGTATAGGCTACTC
ACTCTTTTCACCTCTTTTCTCCTTTAGTCAAATCGATACTTTGTTAAAAG
AACAGAAAGAGAAGCACCTTCAAATGCAATCATTACACGATGAAAGTGAA
TCCTCCAAAGAAGGAATCGATGACATCAAAGCGCAATTGAAAAAATCTCG
CGAAACATTAAGTAAACAGACTGCTAAGCTTAATGTGACTGAAGGTAATT
TTTGAAGGTTTGAAATATATTTACGAGTCTTTTAATAAAAATAAAATTCT
TCGAAATACAGTTGACTTTCTCTAATTCGAGCTCGAACGGGGAATCTTAT
TTGTTCGAATTACAGAGAGGTTCGAGTTATAGAAAGTATTTCATGAGGGT
TTCCCCTTTACGAGGAATAGGAATAAGTTCGAATTATAGGAAAATTCGAA
TAGTAGAAATTCGAATAAACGAGAGTCTACTGTACAATCATGGACAAAAG
GCCTGTAGACTTTTCAAAAATTCCTCAATAGTGCCAAGATAAGCCTTTTT
ACATTTGGGAAATTCCCCAAATGAACCACAAGTGGTTATTTGGCAGAAGA
CACCCAAAGGCTTGCTAGCAGTCCTTGTGGCTTTAGTCCTTGTGATTTTT
AGACTTTCAAAGACTGAAAATGGGTGAACTTCATCCACACAGGGTCTACT
GTACTATTTAAAAGTCGCCTCACGGTGAAAAATCTATCGCATTGAGACAG
GCTTTACTTAGTTTGCAGAGGGGTATGAGCATATATTCATAGAAGATGGA
AACTAATCGGCTCAGGGTAACTCACGGCACGTTTTTACCAGCTCCTGCCT
GAATCCTGAATCCTGAATCCTACTTGTTGAAATACGTTATTAGGGCTATT
TACGGTTACGCAGACAGTTTGAAGCATTTTAAAGATAGGGAGGGAGTTTA
AACAAATCCACAAAATAGTCTCATAATTGTTTACACCTTTTTATCTTACA
GAGGATTTGACGAGAGTTACAGACGAACTTCACGTGACCGAAGCAGAACA
CGAGCGTACGAAACGACAGATAGCCGTCAAAGATGCTGAAATTGCACGCC
TCAAACAAGATCTTGAAAATGAGAGTGATCGACTGAACAAAGAGATCGAA
CGTGTAAAGAAATTACAAGAATTACTGGAACAGAAAGAACGTTCGAATGT
TGATGGAGACGACCACGTGTTCACTCTTGAGTTGAAAGTAAGTTTGCCCT
GTTTGAAAAACGGATCAAGAAAGCTAACACAATGCCAATAAAGGGCTTTA
TAGCGTCAGCTTGTGTTTGGCGCCACTATGTTTCGGTCTATCGAACGATG
CATAGAGCGATGGCTGGGTGTTCTGGGTGCCAGTGCCTGAAACCAGCCAA
ACCATGTTCGAATACCCCTCCTCTCCAACATTTCGTTCGGGTTCATATAG
ATGGTTGGCTGTTGACCCCGTGACAGGAATCGAAAGACCGTCTAAATCAC
TGATCACTGGGCTACCCACGTAGAATTTTTGTGTCATTTATGTTAAAGAA
ATACATAAAAATCCGAAAACAGGCTCAGAGATGCTTAGGTCGAAAGCTTA
ATAAGGCTGAAAAATGCTTGAAAGGATGCTTAAATCTAAAGCATAAATTT
AGGGAAATACTGAAAATCCGTAAAATTTCAGCCAAAAAAAGCCATATGCT
TATAAGTACAATGCTTATAAAAAAAGCATGTAGCTCTTAAGTACAATAAA
TTAAATAATGAATTATAAAGAAGTCCCGACAAGTATAATCTCGTGTTTCC
TTTTCACAGGTCAAAGAGCTAGAGAAAGAGCTACATACTTTCCATCAAAA
AAACGAGCGGCTGGTTTCCGAGCTAGATGAAACTTTACAAAGCAGAGACG
ACTTGCAAAACCATTTGAATGAACGAAAAACTGAATTTTCGAAACAAAAT
ACAACTATAAAGACCCTTCAAACTAAGGTATTCTTAAAAATTTCAGATTT
CTTAGATTAATATTTGCCTAAAAATTGCTATTCCTTGATAACAAGCTGGG
GACTTATCGGGGAAGGAGCCACTTCACAATGGTTGATTAATTGGTTGAGT
CATTAGTTCGATTTCGGCATTGATTGCCTTGAATTAAAATCATTTAAATC
CTATATTCATCAAAAAAGGTTTTTTTAACCAAAAAAGGTTTTTTTAACTT
GTTAAATGGAAATTATCTCCATATTTCCAATCTCCTCAGTGAGGATTGTG
AAAGATTTTGGTAAAACCTTGAAACCCAAAAAACCTACAAAGTCCAACCA
CAAGAAAGTTTAGATTATTTTGAATTCCTTTTCGTTCTTAGAATGAAGAA
CTATCAAGAGATCTTGAAGAGAAGAGAAATTCTTTCATGGAGCTTTCACA
AAAGCTTGATGAAACATCAACAGAACTATTAACAACTAAAGATCTTCTTA
TGGAAAAAGACGAGGAAGTGAAACAGGGTCAATTGCAACTCTCACAAATT
TCTGAAGAATTGACTTTAAACGATACATTGAAGG

Coding sequence (CDS) from alignment at sc0000045:16137..28820-

>TCONS_00004538 ID=TCONS_00004538|Name=TCONS_00004538|organism=Clytia hemisphaerica|type=CDS|length=1635bp|location=Sequence derived from alignment at sc0000045:16137..28820- (Clytia hemisphaerica)
ATGGCATTCGATGATGAAGAAAGTCAAAGTGATTATGGTTCATTGATATC
ACCAAGAAAAACTAAAGAGAGGACAGCTACAATCAAGACGCTCAAAGCTG
ACGATATCAAACTGTTACAGCTTGAGGATGAAAATGCATGGCGAATCAAT
CAAGTATCAAATTCTATGAAAGAGCTGGTTAGAGTGCGTCAAATCTTGGA
CAACAGCGAGCACGACCGTTTAAATGAGAGACGTGAAAAACTGTCAACTG
TGCATAAATTGATTGACCTAACCAAAGTAAAGAATCAAATTGAAAGACGG
CTACAAGATTTTAATAATCAGACTACAGATGAAGAATCGAAGTACACCCG
TTTATATGGTAAATACGAACAAGCTTTGGAGAAGATCAAAGAACTTCGCC
AGTTGACAGCATCCGATACTGAGCATGCGCAGAAAGATTATCTTGATGAA
CTTGCCAATATCAAGGCGTCTTATAAACGGGACATGCGTAGTGCGGAAGA
AGAAAGCAAGAAATTGAAACAATCATTGGAAGAACTGTATTCAAGAAGAC
AAAATAATACGACAGCCACTGACAAAAATAATACGCTCTCTGATGTTGAG
AATTTAAAGGATGACTTACCAGCGATCGTCGAAGCTTTATCCAAAGAAGG
GATTGAAGTTGAAAATGAGTCATCAGGCAAACAAGTGCTGGCTGATCTTT
TCAAAGAATACAAGCGTATATTCAACCGGTTAAAACACAATAACATTGGG
TTTACTCATTCAGATGAGGAATATAAGGTACTTCAGCGTGAGCTGAGAAG
CGAAAAGACAAAAAATGAGAAGAATACAAAACAACTACAAGAAAAAGACG
ATTCTATTGGTATTCTAAAAGGTCAAATCGATACTTTGTTAAAAGAACAG
AAAGAGAAGCACCTTCAAATGCAATCATTACACGATGAAAGTGAATCCTC
CAAAGAAGGAATCGATGACATCAAAGCGCAATTGAAAAAATCTCGCGAAA
CATTAAGTAAACAGACTGCTAAGCTTAATGTGACTGAAGAGGATTTGACG
AGAGTTACAGACGAACTTCACGTGACCGAAGCAGAACACGAGCGTACGAA
ACGACAGATAGCCGTCAAAGATGCTGAAATTGCACGCCTCAAACAAGATC
TTGAAAATGAGAGTGATCGACTGAACAAAGAGATCGAACGTGTAAAGAAA
TTACAAGAATTACTGGAACAGAAAGAACGTTCGAATGTTGATGGAGACGA
CCACGTGTTCACTCTTGAGTTGAAAGTCAAAGAGCTAGAGAAAGAGCTAC
ATACTTTCCATCAAAAAAACGAGCGGCTGGTTTCCGAGCTAGATGAAACT
TTACAAAGCAGAGACGACTTGCAAAACCATTTGAATGAACGAAAAACTGA
ATTTTCGAAACAAAATACAACTATAAAGACCCTTCAAACTAAGAATGAAG
AACTATCAAGAGATCTTGAAGAGAAGAGAAATTCTTTCATGGAGCTTTCA
CAAAAGCTTGATGAAACATCAACAGAACTATTAACAACTAAAGATCTTCT
TATGGAAAAAGACGAGGAAGTGAAACAGGGTCAATTGCAACTCTCACAAA
TTTCTGAAGAATTGACTTTAAACGATACATTGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002553XLOC_002553Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004538-proteinTCONS_00004538-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004538-exon-sc0000045-1575043694:28682..28820TCONS_00004538-exon-sc0000045-1575043694:28682..28820Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:27961..28059TCONS_00004538-exon-sc0000045-1575043694:27961..28059Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:27099..27272TCONS_00004538-exon-sc0000045-1575043694:27099..27272Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:22688..22810TCONS_00004538-exon-sc0000045-1575043694:22688..22810Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:20508..20651TCONS_00004538-exon-sc0000045-1575043694:20508..20651Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:19860..20031TCONS_00004538-exon-sc0000045-1575043694:19860..20031Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:18776..18866TCONS_00004538-exon-sc0000045-1575043694:18776..18866Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:18427..18593TCONS_00004538-exon-sc0000045-1575043694:18427..18593Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:17434..17669TCONS_00004538-exon-sc0000045-1575043694:17434..17669Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:16694..16861TCONS_00004538-exon-sc0000045-1575043694:16694..16861Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1575043694:16137..16329TCONS_00004538-exon-sc0000045-1575043694:16137..16329Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:28682..28820TCONS_00004538-exon-sc0000045-1510915933:28682..28820Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:27961..28059TCONS_00004538-exon-sc0000045-1510915933:27961..28059Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:27099..27272TCONS_00004538-exon-sc0000045-1510915933:27099..27272Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:22688..22810TCONS_00004538-exon-sc0000045-1510915933:22688..22810Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:20508..20651TCONS_00004538-exon-sc0000045-1510915933:20508..20651Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:19860..20031TCONS_00004538-exon-sc0000045-1510915933:19860..20031Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:18776..18866TCONS_00004538-exon-sc0000045-1510915933:18776..18866Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:18427..18593TCONS_00004538-exon-sc0000045-1510915933:18427..18593Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:17434..17669TCONS_00004538-exon-sc0000045-1510915933:17434..17669Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:16694..16861TCONS_00004538-exon-sc0000045-1510915933:16694..16861Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1510915933:16137..16329TCONS_00004538-exon-sc0000045-1510915933:16137..16329Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:28682..28820TCONS_00004538-exon-sc0000045-1491911889:28682..28820Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:27961..28059TCONS_00004538-exon-sc0000045-1491911889:27961..28059Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:27099..27272TCONS_00004538-exon-sc0000045-1491911889:27099..27272Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:22688..22810TCONS_00004538-exon-sc0000045-1491911889:22688..22810Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:20508..20651TCONS_00004538-exon-sc0000045-1491911889:20508..20651Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:19860..20031TCONS_00004538-exon-sc0000045-1491911889:19860..20031Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:18776..18866TCONS_00004538-exon-sc0000045-1491911889:18776..18866Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:18427..18593TCONS_00004538-exon-sc0000045-1491911889:18427..18593Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:17434..17669TCONS_00004538-exon-sc0000045-1491911889:17434..17669Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:16694..16861TCONS_00004538-exon-sc0000045-1491911889:16694..16861Clytia hemisphaericaexon
TCONS_00004538-exon-sc0000045-1491911889:16137..16329TCONS_00004538-exon-sc0000045-1491911889:16137..16329Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000045supercontigsc0000045:16137..28820 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0.336365	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004538 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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