TCONS_00004683 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004683
Unique NameTCONS_00004683
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2984

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004683 ID=TCONS_00004683|Name=TCONS_00004683|organism=Clytia hemisphaerica|type=transcript|length=2984bp
TGAGTTTATTGTTGTTGTTCGAATTTTGTAATACATCCACTAGGACGATT
TATTCAGATGAAAAGCGGCAGACAGatggaaagaaagaaaacagaaaGAG
AAGTGgaagaaaaatccaaaaattaaaTCGATGGAcaAGATATGAAAAAA
TGTCTGCTGCAAGAAATTTAAAACGTAAAATCTCAGTGGCTACAAATGGC
GAGTTCAACGATGaatcaacaaaaattaaaaaagctaaaaagagCTCTAC
ACCAtcgtcaaaaaatgaagaaaattgtaaaaaatgtatCAAGAATCGAC
TGTCCCTTAAGTGTGCTGGTCCATACGTATTGGGGCCATCTCTTGGTCGT
TCACCAGTTAAAAGTATTGTTCAATGTTTAGCAAGAAAGATGAGTACTGA
CAATTTCTTCACCATAAAATTACTAACTCTAACCAATTCTAAGGAATCAA
TGAATGATGTTAAGCAGGGTAAAATGTTGATACACACTGAGTATTCGTTG
TTATCTTTACTTCATAAGCAAGAAGGTGTTATACACACTCATGGACTGTT
TCAAGATGAGGTTATACCAGAGGATACATCAGATAAAGCCATCACCAGTG
AAGAACAAGAAACTCGTTTTAAAAAATGCAGACGGTTATGTCTTGTTTTA
GATTGCCTTGAGCCTCACAATTATTGTCAATCTACACAAGATTTTGAGAA
TTTGCAATCGTATGTTATTAAAGAGAAGAAATTGTGTGAGAGGAAAGCTT
TGGTTGTTTTCTTGGATATTATCAAAGTTGTTAAGGGGCTTCATGAGaaa
aatattgttCACAGAGATCTCAAGCTAGGAaatattgttttaaacaaaCG
aacaaGACGGATTACTATTACTAATTTTTGTTTGGGCAAACATTTAGTCA
GAGGTGATGATTTGTTGAATGACCAGAGAGGGAGCCCTGCATATATAAGT
CCTGACGTCCTTAGTGgTCGTCCATACTCAGGCAAAGCATCAGACATGTG
GGCGCTGGGCGTTGTTCTATACACCATGCTGTACGGACAATTCCCATTCT
ACGATAGTGTACCACAGGAGTTATTTCGTAAGATCAAGACTGCTGAATAC
GTTATTCCAAAGGATAAGAGAGTATCAGAGGACACAATTCTCCTGCTGCA
TCGATTGTTGATGTTGGATTCTTCAAAGAGGGCAACTGCTGATGATGCAT
TGATACAGCTACAAACTACTGTCAGTTCCTGGTATTGCTCAACCGTTCTA
CACGATGTTCAGATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAA
CGCCACCAACTCAAATACTACTTCAAACGGTAACCCATCCTCACGGAAAA
GCTCTACAGAATCCATGGATAGCGTCATCTTGGTACAAACTCCAAAACAT
CTCAAACAACCTCACAGACATTCAACTCGATATAGTCACCATAGACATCA
ACAAGAACTTCTGAGGCGAATTCAAAGTATGACTTCACCTCCACCCACAT
TGAGACGTGTTAGTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAA
GCATACGCTAGAGGGATTCGATCAATTGTTCCACTATAAAGACTTTGCTT
AATTTCGCAGCAGAattgtatttttgtgaaatttcaatGACAGATGAGGA
TGCAGTATAGAATTATTTAAAGGTGGTTTCGTTTACATTTTCTGGTCGAA
AGCCTCCTGTAGCTGACTGTTACTGTCGCACAATTCTTTATAGGAACAAC
TTTCCATGAGGACCAGCTTAAGAATAAATCAAATGAAAGGGTCAATTTAA
GCTTCTCTTAAGTCCCTCGAGTGAAGAAAGCATAAGTATATTGTGGCCTA
ACCTAAAACTAGAACAACCGATGTACAGGCAAAATTTACTGGTTATCAAA
CTGGttataaaaattttctattAGAGTATTTTTTTTGACCGTGCGCTTCc
attgaatatattttaaattttgagtctCTGGTTAAACACGATATTTTTTT
AGATCAAATATTGGGCCATTTCATtatatatccatacaggggggttacga
acatttccagggggaggggtaatccgagaagaatttccagggggagttgt
tttcatttttccagggtgTAATaacttattttaaatttttagggGGTTTC
AGACTATgatttagttcgtccacccgcACTCAAAAGGTAGGAAAATCTAT
TTTCCAAgggtttttctgaaaattttcggGGGTAATCAcaaatttcaaag
aattttttttttgacgtgaAAAAGCTCGTCCGTCCCCTGTATGGATTTTT
AATGTAACAACCCATTTCTCTGccaaaaagtttctaaaagacAAATGATT
TGTGATAATTAGAGATTCCATTGACAGACCTCTATACTTCCTACTCGTTA
GAGAATATCAGAAGCTGTCCATTGTACTTGCTGAGAATAACTACCTATCA
TGGTCTTTATTCGCTATTTTTATATTCGatagaaaatatatattataaaa
TTTCTCCAAAGCAATATTATGTTGATCATAatgttatcaaaatattttta
atataacCTATACAATTTTTTGAACCTAAAAATActctctttttcctttt
tttcgtgtgacttattttttacttgtaaaaatctattatatacatataat
ttttttgaaatttaactcGTCTTGTTTTGGGACGatatggagtttttaca
agctcttatttgatttggttggtcgttaaccagtaataaaacaattttgt
tactttttataaagaacgcgtcatttttattacttcaaatgaccaattat
tagagtatcttataaaaactccatctcatctgcttGTTTTCCTTGTTTAT
CTTAAACAATCTTCCcgtaaaaattatatttcctttTTGTCCCGAACAGA
CTTTGCACTAGTCCCGGGATAACTTAATCTTTGACTAAACCCTAACTATT
TCTTAGCTACGGTATAGtttgtccatattcattt
Run BLAST on NCBI

protein sequence of TCONS_00004683-protein

>TCONS_00004683-protein ID=TCONS_00004683-protein|Name=TCONS_00004683-protein|organism=Clytia hemisphaerica|type=polypeptide|length=528bp
SLLLLFEFCNTSTRTIYSDEKRQTDGKKENRKRSGRKIQKLNRWTRYEKM
SAARNLKRKISVATNGEFNDESTKIKKAKKSSTPSSKNEENCKKCIKNRL
SLKCAGPYVLGPSLGRSPVKSIVQCLARKMSTDNFFTIKLLTLTNSKESM
NDVKQGKMLIHTEYSLLSLLHKQEGVIHTHGLFQDEVIPEDTSDKAITSE
EQETRFKKCRRLCLVLDCLEPHNYCQSTQDFENLQSYVIKEKKLCERKAL
VVFLDIIKVVKGLHEKNIVHRDLKLGNIVLNKRTRRITITNFCLGKHLVR
GDDLLNDQRGSPAYISPDVLSGRPYSGKASDMWALGVVLYTMLYGQFPFY
DSVPQELFRKIKTAEYVIPKDKRVSEDTILLLHRLLMLDSSKRATADDAL
IQLQTTVSSWYCSTVLHDVQIVPDIDHQQDKENATNSNTTSNGNPSSRKS
STESMDSVILVQTPKHLKQPHRHSTRYSHHRHQQELLRRIQSMTSPPPTL
RRVSRSTPSLTESDLEAYARGIRSIVPL
Run BLAST on NCBI

transcript from alignment at sc0000047:338047..350387-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004683 ID=TCONS_00004683|Name=TCONS_00004683|organism=Clytia hemisphaerica|type=transcript|length=12341bp|location=Sequence derived from alignment at sc0000047:338047..350387- (Clytia hemisphaerica)
TGAGTTTATTGTTGTTGTTCGAATTTTGTAATACATCCACTAGGACGATT
TATTCAGATGAAAAGCGGCAGACAGATGGAAAGAAAGAAAACAGAAAGAG
AAGTGGAAGAAAAATCCAAAAATTAAATCGATGGAGTGAACAGGTTCATT
CATTTTGGCTTTAACAAAACTGTATACTGTTGCTATATCAAAACTCTTAG
CCCATTTGTTCCATTAAATTTGTTCTATCTCACCCTTTGCTAGAAGGTTG
GCGGCAGACGGATATCATCCACCAGGATTGAAGACGGGGGTTCGGTGTTA
TTATCAGTTAGTAGGGTTATAGGGTTGGAGCTGGAGAGTCACAATATGAG
GCTGAAGGCCTTCTTAGGGGCATCCGTCCGTACCCTCAGAAAATCAGGAT
AGAAGATAGGAAAGTAGAAAATAGGGGGGAAATAAGAGAGGATGCATCCT
ACTAGTTAGCGACTCCAGAAGTCATGCAACTTTCGTTGACGTCAAACCAA
ATGTTTCATTTTTCCGTGAACTTTGAACCCTTCGAACTTTTTTTCTGTGT
ACGCTAAAGCGTTCCAGTTTTTACTAAATGAAAGCCCGTGATCTTAGCTT
TCCAGCGGTATAACACTGTGGACACAGGCTAGACAGACGGCAAATTGGTA
AAATGCCGAACCTTTTGCAACATTTTGAAAATTGTTTGCCGACGGGAGAA
TGTAGTTTTTTTCACTTTTTTGCTTCTTTAGCATGGGAATGTCCCCAAAA
AAAGTTTTTATTTCTGCCGAAATGGATTTTCTTTTCATTTGGGGTTTCTA
TGGCGCGCGGAAGCACCAATAAATACTACCTTGTTTAAAACAAAACTATG
TCATTTAAACTCTCTGAAACGAGCTACATTCGCAAATCCCGTCATTCTGA
CCATAAAAAAGTGGGTCGGTCGGTTGGTCGGGCGAAAAATATTTTCTGTT
TGAACGAAACAGTCCGAGAGGGAAGAATTTTCCTTAGAAAAGGCTGGTAA
ACGGACATTTGATCGCCTTAAGCCTCTTTTTCACTTCACAAAAGCTCCGC
TGGTTTGTTTTGATGCTTCCATATGGTCCGCAATGAAAAATCGGACTTGT
AAATCGGGAAAAAACGGAATTAACGTGTTTCGAATTGTTTTTTTGGGCGA
GATTAGCGTTTGCTCTTTCTCTCAAAAAAGAAAACATGGAGGGTGATGGT
GGAGTTTCAGCTGTCAAGAAAAATGGTTTCCGACTCTCCGACTCTAATTT
TTCAGTAGAAATCACAGTCGGTCGGGTGACAGTAACCAAACAATTTCACT
CGCGGATAGTGGAATTATTAGCGCCCCAAAAAAATAATTCCAAATTAGGA
ATAAAAACGAACTGCTGTTTTTATTATCACGAAGAAAAACAGAAAGTGAG
TTTTATAAATAAGATGTCAATTTACCGGGAGAAGTGAAGTTTTTTCTAGG
AATTACAGCTCGGTCCCCCAAGCAAGTCAAGAGCTCAATCTTTCTTTCCC
ACCTAAATGGAATGGTAAAAATCTTATGAAGTACTTTTTAACGTGCAATT
TTTTCTGTTTTTGGAGAAAATCTAGGTATTTGCTTCATATTCCTAATTAG
GAATACTAGTAAAAGTAAGAAAAATATTCCTAATTTGGCTAAAGGTATTG
ACTGTTGTTTGCCAACCTTGCTGGAACTGCCTGAGTCAGCGCATACGGGT
ACCCGGGGTATGTCCGTTTGTCCGTTCTTCCGTCCGTCCGTTCGTCTTTT
ACCAGCTTTTCTCAGGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACA
ATGATGCAAAATGGCAATGCCCAGAACGTTACGGAGCCCGATTTTTGAGA
AAAAATTTATTTGGGCAAATTTGGGCCAAAAACTACCTAAAAATAGGGTT
TTTTGGACTTTGCGCAAAATCCTGTCATTANNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNAAAATATAGCTTTTCTCAATGTTGACTCATTATTTTT
TTCTGATTTTTTGCACAATGATGCAAAATGGCAATGCCTAAAATGTGTCG
GAGCCTGATTTTCAAAAAAAAATATATTTGGGCAAATTTGGGCCAAAAAC
TGCCTAAAAATAGGGTTTTTTGGACTTAGCACAAAATCCTGACATTACTT
TTGTCTGATTTTTATTACAAAGATGGAGGGCAAGATTCTCTAAAGAATGG
CTGAAGTGGTTTTTCCCGGAAAATTCTTATTCGCCTTAAAAAACGGATTT
TCGTATTTTGGGGAAATTCCCTTTAACCAAATAAGAAAATATAGCTTTTC
TCAAAGTTGACTCATTATTTTTTTCTGATTTCTTGCACAATGATGCAAAA
TAGCAATGCCCAAAATGTGGCGGAGCCAGATTTTTAAGGAATATTTTTAT
GGGCAAATTTGGGCCAAAAACAGCTTAAAAAGTTTTTTGGGGCTGAATGG
TTTAAGTGATTTTCGTATTTGGGGAAATTCCTTTTTACCATTTTACATTA
TTCAACACACAAGCTTTATTTTTCCATTCTGAATTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTCCATTCTGAAT
TTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGATGTTAATCA
TTAGGTAGGTCCATTCAGCATGTTGCTTGTTATTATGGAAACCAAACGAG
TGAGAACAAGTCATAAAACTAAAAGTCAGTTAGGAACATTTGGCGAGTTC
CTGTACGCAGCCGCAATAAAAAAATCATAACAACACTCATTAAAAATGGC
GTTCGTGTCTTTTCTCACTTTTTTTAACCTAGATGATGTAGCAAACAAAG
TAAGTATAAGCACACTGTGCTTTTAATTGGCTTTTAATTGGCTTTAATTG
GCCCTTCCAAATTTCCATTGGGACTTAATTTTGCGGATGACACCCGAATC
AGCGAAATCCACAAAATTTAATCCTGGGAAAGTTTATCCCATTAAAGTAG
TTTGAGTCAATGGGAACGGCAAATTATAAAATACATGAGTTTGCTTTTGC
AAAGAGTAGGCTTTTAAATCGAAATATGAAAGAGATCCATATGTGGAACA
CGCACAAGTGTCTGCACACTCTGAGAGGAAGAAGAACAAATCAGTGACAA
ATATACAATGGAGAATTTCTCAGTGCTACGACATCAGACGGCATTGTTCC
CTCTTATTTTGGATGGGTGCATCTTTTCAGTTGAACACCCTATCTGATTT
TGGAGGTCAAATTATTTTCAGGTCAAAACTTTCTTTTGTTTCATCTGAAA
TGTGAACACAGTAAACAAAGGGATTATCAATTTATAGTCATTTTGTAGTT
TTCCATCCTTTTATGTATATTCGTAAAGGTTTTACTATTGTATCAAAAAA
TCTGCTATTCTGCAGTAACATTATTCAAAATTCCAACTGCAGTTCTGATT
TTTTATCCAAAAAATTATACTGTTTTTATTCCTGAAAAAGAGCATCAAAC
TATTTGTTCTTCCTCTTTCTTTTAAAGCCATTTGATCTCCTTTCAAAGTA
GGATTTTCTCCCTTTTATATTGATTTTTAAGATGGTTATTGTTTATCACC
TGGCTTTCTCTTCATGCTATATTGTATATATTATCATTTTAATTAAATTT
GAAACGTTAACTTCTATAATGTATTAGACTACCCACCCAGTCTCCCTATT
TCTTTTTTCATGGCTTATGATTGTATTTTTCTCTTTACTTTCATTAATCT
TTATTTCTTATTTTGTCAGAACACGATGTTTGAAATACTATTTTACCAAC
CCACTTTCAAAGGATGTCTGCTTCAACTCTCAACCTTGATTTTGATATGG
GTTTTCAAACAAACTAAATACACTTTATCACTTTAGCTGTGTGGTCAGTT
TTTGAATGGGCTGGTAATTAATTTACAAGGAAATGACGCCTAATTCTTTG
TCTTTTACGATGTCAATGCAAGGACTTCAGACATTTTGAGATCTTCCTTT
CTGGTAGACTTGAGCCCAGTCTCCTCACTTTTTGTAGATTGAAGTGTATT
ATGATAGACATTGCAAAGACATTTGGTTTGATGAGTATGGAAAAAAGGTG
TAATACTTAAATTCAATATAATATTCTAGCATTAAAAAAAAGAGGAAATG
AGACACTTTAAAATAGATTTAGGATGGCATTAAGTTGATCATCAAATCTA
ATATCAATTCTGCTTTAAATTCACACACAAAATATTTCGATCAGATTTTT
TCACTTCGTGAATTGTTTTAAATGTTCTCAAAATTTTATTTACTGTTTAC
CATTTGTTTGTGTAACAAACTTTTGTAAACAATCTCTTTAAAACGTCTAC
TGTTGAGTATAACTAATTATTTTGTTTTTAAAAACCTCTTTCTTTTTTAT
TTAGCAAGATATGAAAAAATGTCTGCTGCAAGAAATTTAAAACGTAAAAT
CTCAGTGGCTACAAATGGCGAGTTCAACGATGAATCAACAAAAATTAAAA
AAGCTAAAAAGAGCTCTACACCATCGTCAAAAAATGAAGAAAATTGTAAA
AAATGTATCAAGAATCGACTGTCCCTTAAGTGTGCTGGTCCATACGTATT
GGGGCCATCTCTTGGTCGTTCACCAGTTAAAAGTATTGTTCAATGTTTAG
CAAGAAAGATGAGTACTGACAATTTCTTCACCATAAAATTACTAACTCTA
ACCAATTCTAAGGAATCAATGAATGATGTTAAGCAGGGTAAAATGTTGAT
ACACACTGAGTATTCGTTGTTATCTTTACTTCATAAGCAAGAAGGTGTTA
TACACACTCATGGACTGTTTCAAGATGAGGTTATACCAGAGGATACATCA
GATAAAGCCATCACCAGTGAAGAACAAGAAACTCGTTTTAAAAAATGCAG
ACGGTTATGTCTTGTTTTAGATTGCCTTGAGCCTCACAATTATTGTCAAT
CTACACAAGATTTTGAGAATTTGCAATCGTATGTTATTAAAGAGAAGAAA
TTGTGTGAGAGGAAAGCTTTGGTTGTTTTCTTGGATATTATCAAAGTTGT
TAAGGGGCTTCATGAGGTAAGATTTAGATTTTGATATATTTACATTACAA
GAGTCTTCTACATATTCATTTAATAAGACTATGTATAATATATTTTTTAA
ATTTATTTGTTTAGTTTACTTTAATTGGATTAATCTGCTTGAGGTTTCAA
TTTTGCAAGCCTTAGAAAATTGCGAAATTTTGTGGATTTATTTTTGTAAA
CAAACATACAAACCAACGTTTTCAAATATCTCTTGTGGATTTAATTTCAG
AGATCAGCTAAAAATCAGTTGAAAATTGTCCTGAGAACGCCAATTTTGAC
AAAATTAGCAGATACACAGATTTTTTAAGCCGAAAATCTGACCTTAAAAT
GTTGCATTTATTTAATTTCGTGAGTTTTATTTTTGCAAAACAGTAAAAAG
ATTCACAAAAATTCTAAAATTAGATCTCACGAAAATTAATTGATCCAAAA
ATGAAAGTAATACGAATTTTTTCGTTTTGAATCGTTCGATTGTCAGCTTA
ATTCATTTAAATCTTTAGCTATGGAAAATCTTTTAATTTTGGCTTTTTCT
ATCATTTTTTCCTTTTTTTTGTTTTAGAAAAATATTGTTCACAGAGATCT
CAAGCTAGGAAATATTGTTTTAAACAAACGGTAAGCTTTCCATGTAACTT
TTTAAGTCATGTATCTACTTCCCTATTGGTAGAGATTGAATGAATAATAT
ACTGTAGCCAGTTTCGAAAAAGGGTGTTGTTTACTCTCGTGTACCTAATA
GCCGGGGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGG
TGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGG
GGGGTGGAATAAGCGGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGC
GGGGGGGGTGGAATAAGCGGGGGGGGTGGAATAAGCAGGGGGGTTGGAAA
AAATCTGAATCAAAAATCAGAATTAATACAAAAAAGGGAACTTTCAAAAA
CATTTTCCCAAAAATTAATAAGCGGGGGGGTTGGAATAAGAATGTCCTGG
GTGGCTATTAGGTACCCGAGAGTAGGTCATTTTTTTTTCGATTTCTAAAG
CTAATAGTCTTGATTAATTTTAGGGAATCAATTATGTCCACTTAAAATCC
TCTATATCGTTTTGAAAGCTTCTAAATGATGTATTTCAGGTCTGAAGTGG
TTTTTGTGTCAGTCTTTGTCAATGAAAATCTGAGACCTTATTCACTCACC
CCAATATTAATTCTATATGAGCCGATTCCTATACACGTGTACGCCCGAAA
AAAACAAACTAAGAAAGTTCATTTTCGTTCATCATCGATCGTTCACCTCT
ATTCTTTTTTAGAACAAGACGGATTACTATTACTAATTTTTGTTTGGGCA
AACATTTAGTCAGAGGTGATGATTTGTTGAATGACCAGAGAGGGAGCCCT
GCATATATAAGTCCTGACGTCCTTAGTGGTGAGTTCTTTTAATTATTTTT
GGGCGGATTGTCAAAGTTTTGAACGTTTCTTGGAACTTAACTCTTTCTTT
CATCCTTTTTAACAAAAATCATAAAAGCTATAAGGGCCATTCCGAGAAAG
TGTCAACCACGCTGGGAGAATTTATGCCTGATTGAACCACTTCTATGGGT
GCTATGAAATGTTGCAATGGTCACGGTGTTCCTAGGTCTCTGCTGGCGGT
ATCCAGTCAAAGATAAGCGTGACGTAACGTACCCCTTACTCTGGAATGGC
CGCTAACTCGATGCTATATTTCGATTGTATTTTGAATAATTTATCCAAAA
ATGTCACTTTACTATTCTACTAGTGAACAAAAAATGAGGTAGGGGGTGAA
GCATCAATAAGGGTTATGTATACAATTACTTTATATTTTTATGAATTTTT
AGGTCGTCCATACTCAGGCAAAGCATCAGACATGTGGGCGCTGGGCGTTG
TTCTATACACCATGCTGTACGGACAATTCCCATTCTACGATAGTGTACCA
CAGGAGTTATTTCGTAAGATCAAGACTGCTGAATACGTTATTCCAAAGTA
TGTTTCTTTTATGTGCGTATAAATGCCGTTGTGATTTTTAAGATGTAGCA
CTTTGAAGTCTTTAAAGAGTATCATTTTATCTCCCTTCATTTTTACACAA
CATTTTAGACAAATTTTTTTCCTTTTCGCGCCACGTGGTTACAAATTAAA
GAAATTGTTGTTTATTTTGCTACGTCAGCATATGGTACACTTTCAAAAGA
AAATTGTTAAGCTTAAATTGTCGAATACCCTTACAATGAACCATCTCTTT
AATTTGCCCTTACAGTGCAATTACTTTCGGAAGCTGAAAAACATATTCTG
CTTATCCTACGGATGTGAAGCATTTTGGGTTCAAAACTCTTTATGATACG
GCGGAGTCTCCCTAACTCGAACACGAACAGAGAACACAAATCTGTTCGAA
TTATGGAAATTTCGAGTTATAAAGATTGTTAACTTAAGGTTACAAAAAGA
TTTGACTGAATTTTTGGACCTACCCCGGTGGGGTGAAGGTCCTATAAATT
AACCCGTGTTCGTTAGTTCGTTCGTTCGTTAGTTACCAACTTTTCTCGAG
ATTGGCTCATTCAATTTTTCTGATTTTTTGCACAAAGGTGCATTACTATA
AACCCTCGAATGTGACGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTC
CGGCCGCTAGAACCGGAAATGTCCCGAAAAAAGCGGTTTTTTGAGATTTT
CTCGAGATTTTCTCATTAGTTTTTTGCGATTTTTTGCACATAGATGCACA
TAAGTACTGCCGAAAAGGTGTTTCTTAATTGCTTTTTCCGTTCCAATAGA
TATATAATTCGAAATTTAAAATTATACATTACTTCCATTAAATTCTAATT
ATTCGTTTTATAAATAGGTAGGTCCATTAAAGTATTGCTTGTTATTTCTT
ACTTAACTATCATTGCTGTCGTTTCCATTCTACCAGGGATAAGAGAGTAT
CAGAGGACACAATTCTCCTGCTGCATCGATTGTTGATGTTGGATTCTTCA
AAGAGGGCAACTGCTGATGATGCATTGATACAGCTACAAACTACTGTCAG
TTCCTGGTAAGATCTCCCAACATCACTTCCTTCTACCTCTCCCTACCCAC
TCGAAAAATACGAATATATTGTCTCCAGGCTTCAGAAAGATTCCGTAAAA
CTTCATCCCCGTAAGAAAAAGACACTGACGTCTGATGGATTTTCATCCTG
AAATAAAGTTTTGACAACAAAAATTATTTTGTAAAACAGGTGCCAAAAAG
TTTGACAAAAAAAATATTTTGTAAAATAGGTGCCAGTTTAGAGAAAGAAT
CAACACTATTTTTTTTATTCTGTTACTGACTTTTTCATTACAAGATTGGA
GTCTATTTTACGTTTCATTGAGATTTTTAAAGCTGGTTGCAACACTGGAG
GACGTTGATATTTTTTTCACGTATTAACAAATATTTGTTTGTGCAAAGTT
ATTTTTACATTGGATTCTAAGTACTTCATTATTCTATCTCAAAATTTAAG
TTAGCCTTCCCTTAACATTTTTAGTTTGCTCACAGTCTGAATTCGATCTT
GTACACTTTTTTTTCAAACACCTGGTATCTCTCTTCAGGTATTGCTCAAC
CGTTCTACACGATGTTCAGATTGTGCCTGATATCGATCACCAACAAGATA
AAGAAAACGCCACCAACTCAAATACTACTTCAAACGGTAACCCATCCTCA
CGGAAAAGCTCTACAGAATCCATGGATAGCGTCATCTTGGTACAAACTCC
AAAACATCTCAAACAACCTCACAGACATTCAACTCGATATAGTCACCATA
GACATCAACAAGAACTTCTGAGGCGAATTCAAAGTATGACTTCACCTCCA
CCCACATTGAGACGTGTTAGTCGTAGCACTCCTTCACTTACGGAAAGTGA
TTTAGAAGCATACGCTAGAGGGATTCGATCAATTGTTCCACTATAAAGAC
TTTGCTTAATTTCGCAGCAGAATTGTATTTTTGTGAAATTTCAATGACAG
ATGAGGATGCAGTATAGAATTATTTAAAGGTGGTTTCGTTTACATTTTCT
GGTCGAAAGCCTCCTGTAGCTGACTGTTACTGTCGCACAATTCTTTATAG
GAACAACTTTCCATGAGGACCAGCTTAAGAATAAATCAAATGAAAGGGTC
AATTTAAGCTTCTCTTAAGTCCCTCGAGTGAAGAAAGCATAAGTATATTG
TGGCCTAACCTAAAACTAGAACAACCGATGTACAGGCAAAATTTACTGGT
TATCAAACTGGTTATAAAAATTTTCTATTAGAGTATTTTTTTTGACCGTG
CGCTTCCATTGAATATATTTTAAATTTTGAGTCTCTGGTTAAACACGATA
TTTTTTTAGATCAAATATTGGGCCATTTCATTATATATCCATACAGGGGG
GTTACGAACATTTCCAGGGGGAGGGGTAATCCGAGAAGAATTTCCAGGGG
GAGTTGTTTTCATTTTTCCAGGGTGTAATAACTTATTTTAAATTTTTAGG
GGGTTTCAGACTATGATTTAGTTCGTCCACCCGCACTCAAAAGGTAGGAA
AATCTATTTTCCAAGGGTTTTTCTGAAAATTTTCGGGGGTAATCACAAAT
TTCAAAGAATTTTTTTTTTGACGTGAAAAAGCTCGTCCGTCCCCTGTATG
GATTTTTAATGTAACAACCCATTTCTCTGCCAAAAAGTTTCTAAAAGACA
AATGATTTGTGATAATTAGAGATTCCATTGACAGACCTCTATACTTCCTA
CTCGTTAGAGAATATCAGAAGCTGTCCATTGTACTTGCTGAGAATAACTA
CCTATCATGGTCTTTATTCGCTATTTTTATATTCGATAGAAAATATATAT
TATAAAATTTCTCCAAAGCAATATTATGTTGATCATAATGTTATCAAAAT
ATTTTTAATATAACCTATACAATTTTTTGAACCTAAAAATACTCTCTTTT
TCCTTTTTTTCGTGTGACTTATTTTTTACTTGTAAAAATCTATTATATAC
ATATAATTTTTTTGAAATTTAACTCGTCTTGTTTTGGGACGATATGGAGT
TTTTACAAGCTCTTATTTGATTTGGTTGGTCGTTAACCAGTAATAAAACA
ATTTTGTTACTTTTTATAAAGAACGCGTCATTTTTATTACTTCAAATGAC
CAATTATTAGAGTATCTTATAAAAACTCCATCTCATCTGCTTGTTTTCCT
TGTTTATCTTAAACAATCTTCCCGTAAAAATTATATTTCCTTTTTGTCCC
GAACAGACTTTGCACTAGTCCCGGGATAACTTAATCTTTGACTAAACCCT
AACTATTTCTTAGCTACGGTATAGTTTGTCCATATTCATTT

Coding sequence (CDS) from alignment at sc0000047:338047..350387-

>TCONS_00004683 ID=TCONS_00004683|Name=TCONS_00004683|organism=Clytia hemisphaerica|type=CDS|length=1587bp|location=Sequence derived from alignment at sc0000047:338047..350387- (Clytia hemisphaerica)
AGTTTATTGTTGTTGTTCGAATTTTGTAATACATCCACTAGGACGATTTA
TTCAGATGAAAAGCGGCAGACAGATGGAAAGAAAGAAAACAGAAAGAGAA
GTGGAAGAAAAATCCAAAAATTAAATCGATGGACAAGATATGAAAAAATG
TCTGCTGCAAGAAATTTAAAACGTAAAATCTCAGTGGCTACAAATGGCGA
GTTCAACGATGAATCAACAAAAATTAAAAAAGCTAAAAAGAGCTCTACAC
CATCGTCAAAAAATGAAGAAAATTGTAAAAAATGTATCAAGAATCGACTG
TCCCTTAAGTGTGCTGGTCCATACGTATTGGGGCCATCTCTTGGTCGTTC
ACCAGTTAAAAGTATTGTTCAATGTTTAGCAAGAAAGATGAGTACTGACA
ATTTCTTCACCATAAAATTACTAACTCTAACCAATTCTAAGGAATCAATG
AATGATGTTAAGCAGGGTAAAATGTTGATACACACTGAGTATTCGTTGTT
ATCTTTACTTCATAAGCAAGAAGGTGTTATACACACTCATGGACTGTTTC
AAGATGAGGTTATACCAGAGGATACATCAGATAAAGCCATCACCAGTGAA
GAACAAGAAACTCGTTTTAAAAAATGCAGACGGTTATGTCTTGTTTTAGA
TTGCCTTGAGCCTCACAATTATTGTCAATCTACACAAGATTTTGAGAATT
TGCAATCGTATGTTATTAAAGAGAAGAAATTGTGTGAGAGGAAAGCTTTG
GTTGTTTTCTTGGATATTATCAAAGTTGTTAAGGGGCTTCATGAGAAAAA
TATTGTTCACAGAGATCTCAAGCTAGGAAATATTGTTTTAAACAAACGAA
CAAGACGGATTACTATTACTAATTTTTGTTTGGGCAAACATTTAGTCAGA
GGTGATGATTTGTTGAATGACCAGAGAGGGAGCCCTGCATATATAAGTCC
TGACGTCCTTAGTGGTCGTCCATACTCAGGCAAAGCATCAGACATGTGGG
CGCTGGGCGTTGTTCTATACACCATGCTGTACGGACAATTCCCATTCTAC
GATAGTGTACCACAGGAGTTATTTCGTAAGATCAAGACTGCTGAATACGT
TATTCCAAAGGATAAGAGAGTATCAGAGGACACAATTCTCCTGCTGCATC
GATTGTTGATGTTGGATTCTTCAAAGAGGGCAACTGCTGATGATGCATTG
ATACAGCTACAAACTACTGTCAGTTCCTGGTATTGCTCAACCGTTCTACA
CGATGTTCAGATTGTGCCTGATATCGATCACCAACAAGATAAAGAAAACG
CCACCAACTCAAATACTACTTCAAACGGTAACCCATCCTCACGGAAAAGC
TCTACAGAATCCATGGATAGCGTCATCTTGGTACAAACTCCAAAACATCT
CAAACAACCTCACAGACATTCAACTCGATATAGTCACCATAGACATCAAC
AAGAACTTCTGAGGCGAATTCAAAGTATGACTTCACCTCCACCCACATTG
AGACGTGTTAGTCGTAGCACTCCTTCACTTACGGAAAGTGATTTAGAAGC
ATACGCTAGAGGGATTCGATCAATTGTTCCACTATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002639XLOC_002639Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004683-proteinTCONS_00004683-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004683-exon-sc0000047-1575043694:350253..350387TCONS_00004683-exon-sc0000047-1575043694:350253..350387Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:345072..345733TCONS_00004683-exon-sc0000047-1575043694:345072..345733Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:344458..344510TCONS_00004683-exon-sc0000047-1575043694:344458..344510Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:343610..343725TCONS_00004683-exon-sc0000047-1575043694:343610..343725Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:343041..343185TCONS_00004683-exon-sc0000047-1575043694:343041..343185Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:340332..340451TCONS_00004683-exon-sc0000047-1575043694:340332..340451Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1575043694:338047..339799TCONS_00004683-exon-sc0000047-1575043694:338047..339799Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:350253..350387TCONS_00004683-exon-sc0000047-1510915933:350253..350387Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:345072..345733TCONS_00004683-exon-sc0000047-1510915933:345072..345733Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:344458..344510TCONS_00004683-exon-sc0000047-1510915933:344458..344510Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:343610..343725TCONS_00004683-exon-sc0000047-1510915933:343610..343725Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:343041..343185TCONS_00004683-exon-sc0000047-1510915933:343041..343185Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:340332..340451TCONS_00004683-exon-sc0000047-1510915933:340332..340451Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1510915933:338047..339799TCONS_00004683-exon-sc0000047-1510915933:338047..339799Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:350253..350387TCONS_00004683-exon-sc0000047-1491911889:350253..350387Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:345072..345733TCONS_00004683-exon-sc0000047-1491911889:345072..345733Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:344458..344510TCONS_00004683-exon-sc0000047-1491911889:344458..344510Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:343610..343725TCONS_00004683-exon-sc0000047-1491911889:343610..343725Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:343041..343185TCONS_00004683-exon-sc0000047-1491911889:343041..343185Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:340332..340451TCONS_00004683-exon-sc0000047-1491911889:340332..340451Clytia hemisphaericaexon
TCONS_00004683-exon-sc0000047-1491911889:338047..339799TCONS_00004683-exon-sc0000047-1491911889:338047..339799Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000047supercontigsc0000047:338047..350387 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
7.91914	9.26699	2.86868	1.40356	19.6501	10.8019	11.8103	9.53161	2.93625	4.95958	4.81389	4.85217	3.79207	5.46959	3.05779	4.05359	1.66456	3.89971	2.92627	2.11417	5.81907	9.41139	10.8959	12.5476	1.70049	6.67763	10.4244	7.88032	14.7666	11.4627
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00004683 vs. Swiss-Prot (Human)
Match: STK40 (Serine/threonine-protein kinase 40 OS=Homo sapiens GN=STK40 PE=1 SV=2)

HSP 1 Score: 409.838 bits (1052), Expect = 2.926e-132
Identity = 207/338 (61.24%), Postives = 251/338 (74.26%), Query Frame = 3 
Query:  309 KCAGPYVLGPSLGRSPVKSIVQCLARKMSTDNFFTIKLLTLTNSKE---SMNDVKQGKMLIHTEYSLLSLLHKQEGVIHTHGLFQDEV--IPEDTSDKAITSEEQETRFKKCRRLCLVLDCLEPHNYCQSTQDFENLQSYVIKEKKLCERKALVVFLDIIKVVKGLHEKNIVHRDLKLGNIVLNKRTRRITITNFCLGKHLVRGDDLLNDQRGSPAYISPDVLSGRPYSGKASDMWALGVVLYTMLYGQFPFYDSVPQELFRKIKTAEYVIPKDKRVSEDTIXXXXXXXXXDSSKRATADDALIQLQTTVSSWYC-STVLHDVQIVPDIDHQQDKENA 1304
            K AGP++LGP LG SPV SIVQCLARK  TD+F+ +K+LTL    +      + +QGKML+HTEYSLLSLLH Q+GV+H HGLFQD    I EDT    +         K  +R+CLVLDCL  H++   T D  NLQ YVIKEK+L ER+ +V+F D+++VV+ LH+KNIVHRDLKLGN+VLNKRT RITITNFCLGKHLV   DLL DQRGSPAYISPDVLSGRPY GK SDMWALGVVL+TMLYGQFPFYDS+PQELFRKIK AEY IP+D RVSE+T+ L+ +LL+LD  +R  A D L  L   ++SW   S++   +Q+VPDID Q    ++
Sbjct:   30 KRAGPFILGPRLGNSPVPSIVQCLARKDGTDDFYQLKILTLEERGDQGIESQEERQGKMLLHTEYSLLSLLHTQDGVVHHHGLFQDRTCEIVEDTESSRMVK-------KMKKRICLVLDCLCAHDFSDKTADLINLQHYVIKEKRLSERETVVIFYDVVRVVEALHQKNIVHRDLKLGNMVLNKRTHRITITNFCLGKHLVSEGDLLKDQRGSPAYISPDVLSGRPYRGKPSDMWALGVVLFTMLYGQFPFYDSIPQELFRKIKAAEYTIPEDGRVSENTVCLIRKLLVLDPQQRLAAADVLEALSAIIASWQSLSSLSGPLQVVPDIDDQMSNADS 360
The following BLAST results are available for this feature:
BLAST of TCONS_00004683 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
STK402.926e-13261.24Serine/threonine-protein kinase 40 OS=Homo sapiens... [more]
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