|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004772 ID=TCONS_00004772|Name=TCONS_00004772|organism=Clytia hemisphaerica|type=transcript|length=6986bpRun BLAST on NCBI protein sequence of TCONS_00004772-protein >TCONS_00004772-protein ID=TCONS_00004772-protein|Name=TCONS_00004772-protein|organism=Clytia hemisphaerica|type=polypeptide|length=2057bp MAEEDDWKKLPIEEKVTHKVWKARVAGYEEAAKRFRLIDDEKSSEYNNFLRun BLAST on NCBI transcript from alignment at sc0000048:63905..100613- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00004772 ID=TCONS_00004772|Name=TCONS_00004772|organism=Clytia hemisphaerica|type=transcript|length=36709bp|location=Sequence derived from alignment at sc0000048:63905..100613- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000048:63905..100613- >TCONS_00004772 ID=TCONS_00004772|Name=TCONS_00004772|organism=Clytia hemisphaerica|type=CDS|length=6174bp|location=Sequence derived from alignment at sc0000048:63905..100613- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00004772 vs. Swiss-Prot (Human)
Match: CKAP5 (Cytoskeleton-associated protein 5 OS=Homo sapiens GN=CKAP5 PE=1 SV=3) HSP 1 Score: 525.783 bits (1353), Expect = 1.310e-152 Identity = 312/845 (36.92%), Postives = 493/845 (58.34%), Query Frame = 2
Query: 3713 KTSKAVGSSSRSK---------KNAVVEDD---GPP-IIHKVGKNQRMKEEKALKVLKWNFSVPRDEIVEQLKEQIQPCVSPSMHTKLFHKDFKFHLEAIDILTKSIETYTDAMLESLDLLLKWVTLRFFDTNTSVLLKALDFISHLFSMLGDRDYQLSPFEAQAFMPYLVGKIGDPKDNVRKSVRGIVKQSTKLYPASKIFSYLMEGLQSKNVKSRMECCEELGFLINKCGIEVCQPSL-KVLKDIAAQIADRDNGVRSAALNCIVAAYNIVGDTVYKYIGRLAEKESSYLEERIKRSGNXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSVDASDGGSAPPKPDLAALRAMV-RAQTAPAIKREFELDFKAIEGDEDTITGSIPTLKSVNISAVMEAANIPTNLRQAYDTNKQSTTVHSSVKDIAELLDLTIAKISSADIQVAMENLLQIEDVFKKKKMDEPILKRIDQYLVTALVQLKMLFSRHMXXXXXXXXXXXXXXXXXXXXXXXXFDTHFYARVVSKNVLKDVILFFITTLNDKSLEKFEGSELSVQIVNRLLLRVITNSNKTHCLGACIKLLQELSENSNTSPALLKLVMKCMWKLTHLLPDFISEVNLEAVLLDIHTFYKILPTAFWKAKEDRGPQQTVKALLSTLCKLRSSQLLECLKAIEDPNASDVPSFIQRHCGRPKXXXXXXXXXXXAAQPSVTKSVEVAPISVGGPTNEALVEIFRKIGSKEQSRAGILELYHFKKKYPDMNVEPFIKNASPFFQSFIERSLNQIGLD-EGK---------APGDNIGPTPVPSSLPTSQSEPSNLQMSESAKYMDRLKMLKEQ 6172
K +KA G SS++K K ++ ED+ GP I+ GK QRMK+EK LKVLKWNF+ PRDE +EQLK Q+ CV+ + ++FH DF+ H +A+ ++ +E+ + ++ LDL+LKW+TLRFFDTNTSVL+KAL+++ LF++L + +Y L+ EA +F+PYLV K+G+PKD +RK VR I+ + +YPASK+F ++MEG +SKN K R EC EELG L+ G+ VCQP+ K LK+IA I DRDN VR+AALN IV YN+ GD V+K IG L+EK+ S LEERIKRS + + + P A+ G + L R+M + A ++REF+LD IE D T+ +P L + + E IP +A + +HS + A ++ I++++S DI +++ L QI++V +++ E + IDQ+L+ +QL+++++ HM +++ + + +L ++ +++LF AR S VLKD++ IT + D +E E + ++ VN L+++V+ S++T+ L A + LLQ+ + +SP +LVMKC+W++ LLPD I+ +NL+ +LLDIH F K+ P K + P +T+K LL TLCKL+ ++L+ L I++ N S++ + + R T + + + + + S N+ L EIF+KIGSKE ++ G+ ELY +KKKY D ++EPF+KN+S FFQS++ER L I ++ EGK +P + P P+S +S + ++ S Y++RLK+L+++
Sbjct: 1125 KKAKAPGLSSKAKSAQGKKMPSKTSLKEDEDKSGPIFIVVPNGKEQRMKDEKGLKVLKWNFTTPRDEYIEQLKTQMSSCVAKWLQDEMFHSDFQHHNKALAVMVDHLESEKEGVIGCLDLILKWLTLRFFDTNTSVLMKALEYLKLLFTLLSEEEYHLTENEASSFIPYLVVKVGEPKDVIRKDVRAILNRMCLVYPASKMFPFIMEGTKSKNSKQRAECLEELGCLVESYGMNVCQPTPGKALKEIAVHIGDRDNAVRNAALNTIVTVYNVHGDQVFKLIGNLSEKDMSMLEERIKRSAKRPSAAPIKQVEEKPQRAQNISSNANMLRK-------------GPAEDMSSKLNQARSMSGHPEAAQMVRREFQLDLDEIENDNGTVRCEMPELVQHKLDDIFEPVLIPEPKIRA--VSPHFDDMHS---NTASTINFIISQVASGDINTSIQALTQIDEVLRQEDKAEAMSGHIDQFLIATFMQLRLIYNTHMADEKLEKDEIIKLYSCIIGNMISLFQIESLAREASTGVLKDLMHGLITLMLDSRIEDLEEGQQVIRSVNLLVVKVLEKSDQTNILSALLVLLQDSLLATASSPKFSELVMKCLWRMVRLLPDTINSINLDRILLDIHIFMKVFPKEKLKQCKSEFPIRTLKTLLHTLCKLKGPKILDHLTMIDNKNESELEAHLCRMMKH-----SMDQTGSKSDKETEKGASRIDEKSSKAKVNDFLAEIFKKIGSKENTKEGLAELYEYKKKYSDADIEPFLKNSSQFFQSYVERGLRVIEMEREGKGRISTSTGISPQMEVTCVPTPTSTVSSIGNTNGEEVGPSV-YLERLKILRQR 1945 HSP 2 Score: 509.22 bits (1310), Expect = 2.835e-147 Identity = 264/505 (52.28%), Postives = 355/505 (70.30%), Query Frame = 2
Query: 212 MAEEDDWKKLPIEEKVTHKVWKARVAGYEEAAKRFRLIDDEKSSEYNNFLSLMKKFVLDTNAVAQEKGLEATFSFVENAACATKCCSEVVAGIVAKVLNARPKSKA--LGINICLMYVEIEKQDVVIEELINGFTNKQPKIVAGSVLTVCTALREFGGKVIMMKNLVKSIPALLSHSDKTVRAETKQLAIEIFKWIRDAIKPQLTNIKPVQLKELEEEWEKVDPTPPVPTRFTRSQQKKMAEAPPPAAQTGGSAEVDXXXXXXXXXXXXXIDPWDMFDPVEILSKLPKNFYEQIESKKWQERMESLEELHKLASNPKLEPGQYGEVCAVLKKIITKDSNINVVALAAKCVTGLATGLRKKFQTYSGLLIPAILGKFKEKKLNVVVSLRDAIDAVFASTNLNSIMEDVVAHLDNKNPSIKDETCKFLTRVFSTATPATIPKGVLKTLAPVLVKKLDDTVGPVRDSAAECLGTALKALGERAMAAHLEGLDKIKQDKVKEYSEKAEI 1720
M ++ +W KLP+++K HK+WKAR++GYEEA K F+ I DEKS E++ FL L+KKFV D+NAV Q KGLEA +VENA A K EVV+G+V+KV N +PK+KA LGI ICLMY+EIEK + V EEL+ G NK PKI+ + T+ AL EFG K+I++K ++K +P L +K VR E K +A+EI++WIRDA++P L NI VQLKELEEEW K+ + P PTRF RSQQ+ A+ + SA D G G ID +++ + VEILSKLPK+FY++IE+KKWQER E+LE + L NPKLE G Y ++ LKK++ KD+N+ +VALAAKC+TGLA GLRKKF Y+G ++P IL KFKEKK VV +L++AIDA+F +T L +I EDV+A +DNKNP+IK +T F+ R F T +T+PK +LK L+K ++D+ VRD+A E LGTALK +GE+A+ L +DK+K DK+KE SEK E+
Sbjct: 1 MGDDSEWLKLPVDQKCEHKLWKARLSGYEEALKIFQKIKDEKSPEWSKFLGLIKKFVTDSNAVVQLKGLEAALVYVENAHVAGKTTGEVVSGVVSKVFN-QPKAKAKELGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAVEIYRWIRDALRPPLQNINSVQLKELEEEWVKLPTSAPRPTRFLRSQQELEAKL-----EQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKDFYDKIEAKKWQERKEALESVEVLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDAIFLTTTLQNISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDKLKLDKIKECSEKVEL 499 HSP 3 Score: 411.379 bits (1056), Expect = 6.183e-116 Identity = 226/505 (44.75%), Postives = 317/505 (62.77%), Query Frame = 2
Query: 1994 EPEIAEGTVDAKAEELFGEERLKQLASANWKERLEAVDEMTKKVETLG-DDLPTQVIIRTLAKKPGWKDSNFQALGAKFKLCGLVASKSRDFSRRSAWYAIAGLISKIGDIKLKTQVKETLKVFAENISLNYISLKVAKSAEEAKNPKLHTESLNWMGDALKEFGYR-IDLKPHIAFIKTSLTHTNPGVRKSAIEFLATLYIYVGPPIRMFFEEEKAALLQQIDSEFEKVKDEKPPAPIRRFIDDEEEENSVXXXXXXXXXXXXXXXXXXXVVNMDDLVDRVNISDKLTDAVLNKITDKNWKIRKEGLEEVQGFINEAKFITPDISELPAGLKARLSDNNKVLVTMAINISKQLAEAGGSGMARH-KNTMLPGIIGTFSDAKPHLRKAGEEALDMWHSKIGFLPLLDNEILSTAMKEANPNLRATLLTWLSKVLPNEKKLPGDFKDCIAPLFSCIEDRNGAVRDAAKASVQHFMAHLGYEAMSKATAKLDPTSKKSIQDILEKAR 3499
EPE++ + KA + ++ L S+NWKERL ++E K VE + ++P Q ++R LAKKPGWK++NFQ + K + L+A K +FS+ SA + GL+ KIGD+K KE + AE L + + +V A KNPK +E+LNW+ +A+KEFG+ +++K I+ +KT+L TNP VR +AI L +Y+YVGP +RMFFE+EK ALL QID+EFEK++ + PPAP R ++S D G++G E G V DL+ R ISDK+T +++KI DKNWKIRKEGL+EV G IN+AKFI P+I ELP LK RL+D+NK+LV +NI +QLA A G + +H KN +P II D+K ++R A ++ W + G L+ E LS +K+ NP LR LL WL++ LP + P D C+ L+SC+EDRNG VR A+ ++ FM HLGYE M+KAT KL PTSK + +LEKA+
Sbjct: 584 EPELSIEVCEEKASAVLPPTCIQLLDSSNWKERLACMEEFQKAVELMDRTEMPCQALVRMLAKKPGWKETNFQVMQMKLHIVALIAQKG-NFSKTSAQVVLDGLVDKIGDVKCGNNAKEAMTAIAEACMLPWTAEQVVSMAFSQKNPKNQSETLNWLSNAIKEFGFSGLNVKAFISNVKTALAATNPAVRTAAITLLGVMYLYVGPSLRMFFEDEKPALLSQIDAEFEKMQGQSPPAPTRGI-----SKHSTSGTDEGEDGDEPDDGSNDVV----DLLPRTEISDKITSELVSKIGDKNWKIRKEGLDEVAGIINDAKFIQPNIGELPTALKGRLNDSNKILVQQTLNILQQLAVAMGPNIKQHVKNLGIP-IITVLGDSKNNVRAAALATVNAWAEQTGMKEWLEGEDLSEELKKENPFLRQELLGWLAEKLPTLRSTPTDLILCVPHLYSCLEDRNGDVRKKAQDALPFFMMHLGYEKMAKATGKLKPTSKDQVLAMLEKAK 1077 HSP 4 Score: 91.2781 bits (225), Expect = 6.845e-18 Identity = 128/499 (25.65%), Postives = 209/499 (41.88%), Query Frame = 2
Query: 2081 WKERLEAVDEMTKKVETLGDDLPTQVIIRTLAKKPGWKDSNFQALGAKF--------KLCGLVAS----KSRDFSRRSAWYAIAGLISKIGDIKLKTQVKETLKVFAENISLNYISLKVAKSAEEA-------KNPKLHTESLNWMGDALKEFGYRIDL-KPHIAFIKTSLTHTNPGVRKSAIEFLATLYIYVGPPIRMFFEEEKAALLQQIDSEFEKVKDEKPPAPIRRFIDDEEEENSVXXXXXXXXXXXXXXXXXXXVVNMD--DLVDRVNISDKLTDAVLNKITDKNWKIRKEGLEEVQGFINEAKFITPDISELPAGLKARLS-DNNKVLVTMAINISKQLAEAGGSGMARHKNTMLPGIIGTFSDAKPHLRKAGEEALDMWHSKIGFLPLLDN--EILSTAMKEANPNLRATLLTWLSKVLPN--EKKLPGD-FKDCIAPLFSCIEDRNGAVRDAAKASVQHFMAHLGYEAMSKATAKLDPTSKKSIQDILEK 3493
WK RL +E K + + D+ K P W S F L KF +L GL A+ ++ + ++ ++G++SK+ + Q K K I L YI ++ ++ +E KNPK+ + + AL EFG +I L KP I + VR A +Y ++ +R + + L++++ E+ K+ P P R +E E +E E GG DG V +D +L++ V I KL +KI K W+ RKE LE V+ I K D ++L LK + D N +LV +A LA ++ ++P I+ F + KP + +A +EA+D I L N E + M NP ++ ++++ + LP K A L I D VRDAA ++ + +G +A++ A +D I++ EK
Sbjct: 21 WKARLSGYEEALKIFQKIKDE-----------KSPEW--SKFLGLIKKFVTDSNAVVQLKGLEAALVYVENAHVAGKTTGEVVSGVVSKVFN-----QPKAKAKELGIEICLMYIEIEKGEAVQEELLKGLDNKNPKIIVACIETLRKALSEFGSKIILLKPIIKVLPKLFESREKAVRDEAKLIAVEIYRWIRDALRPPLQNINSVQLKELEEEWVKLPTSAP-RPTRFLRSQQELEAKLEQQQSAGGDAEGGGDDGDEVPQIDAYELLEAVEILSKLPKDFYDKIEAKKWQERKEALESVEVLIKNPKLEAGDYADLVKALKKVVGKDTNVMLVALAAKCLTGLAVGLRKKFGQYAGHVVPTILEKFKEKKPQVVQALQEAIDA----IFLTTTLQNISEDVLAVMDNKNPTIKQQTSLFIARSFRHCTASTLPKSLLKPFCAALLKHINDSAPEVRDAAFEALGTALKVVGEKAVNPFLADVDKLKLDKIKECSEK 496 The following BLAST results are available for this feature:
BLAST of TCONS_00004772 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.