TCONS_00004855 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004855
Unique NameTCONS_00004855
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length663

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004855 ID=TCONS_00004855|Name=TCONS_00004855|organism=Clytia hemisphaerica|type=transcript|length=663bp
TGTGGATCGGATAAGCGCTGTGTCGATAATTGTAATGATTTAAGCGTTTG
TGTTCCTCTTGCTGTTGAATCCTTGCATGCACACGTTAAAGAAGCAACAA
ATTCTTCTACTATGCAGGAAATATCGACGGTGACAGCTATAAAAGCATTT
GATGGAAGAGAACTCTATGTTTCACAGTAAGCATGGTTTTCAGTATGGTG
AAACAACACATTGGATAAAGGCCGAATTTCACAGTCGAGTTTTCATTGAC
TACGTTGTGTTTGTTAATCGTATGGATATTCCCTGGCATACTCGAAATTC
TCACATTGACCTCAAGACTATTCTTTCCATCAACGGTGAGACCATCATGA
GTTTGTTTGGGAACACTGGTGAATTTGAAATCGAACGTCGAATGTTTATA
TGTATGCTTCAAGCAGATGGGATCTATGCTGTACAGCCACAAGCCGTTTC
AAGAGATGCCATTAATATCATGGAGATTTGGGTCTATGGTGCTATTTTGT
AAATTCGTTGACACATGTGATGGAATTATCTGAAAACATCTCGGGAAGAT
TACAGATCTTGGGCCCTTCCGAAGTTCTATTATTCCGCTCCAAATTCTGT
TATTTAAAATCATTACATTTGAAATTGGGTAAATTGAAAATAGCAAATTA
ACTTCAATGTTCC
Run BLAST on NCBI

transcript from alignment at sc0000049:244914..248705+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004855 ID=TCONS_00004855|Name=TCONS_00004855|organism=Clytia hemisphaerica|type=transcript|length=3792bp|location=Sequence derived from alignment at sc0000049:244914..248705+ (Clytia hemisphaerica)
TGTGGATCGGATAAGCGCTGTGTCGATAATTGTAATGATTTAAGCGTTTG
TGTTCCTCTTGCTGTTGGTGAGTCATACATTCCTAATTCATACTTCAGAG
GCTAAACGGACAAAGGGCTGTTAAAATTAATCTTACATTGAGAAGGCagc
aaatctttttttatttctttattctaTCGGTTATGTATAGACCTTAACTG
AGGAGGTTCAATCTCCAGGTAGCATTGAAAGGAAAAAGAAGTATTGACCA
GGAAAGGTGTAAACACCTTTGTGTACATTCTCCCAAACACTCGTGAACCT
ACTTTcagttatataatttttttatcgatatcaaaatttacttttttctc
AGATGCCTTAGGGCTAAAGGCTTGATTGTTTCAAGAAAAATCTATTCCTA
ATTTTAGCAATGAACAATCATGTAGTGCCATAGTCTCGTTTATAATTCAA
TACCCATACAGTGTACTTTAGGcttacaaactttcgcgagcagaaacttt
cacgagtcagaaaaatcgcgaaattcacgacatttactttcgcgaatttt
attaaaaaatgtttttcgcgagcataaactttcaatTCAGCATTGCGGAC
GAAGTAAAactcagaataaaaacatactggtttaaaatatttcgctCTCT
CTTAGAGCATCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNACCATGTCATCAGAAACATCCCGAAGGGACAATTCAT
CAGAATCCGTCGAATTTGTACGAACGTAGCTGACTACATCAACCATGGCA
AACAACTCCTTCAGTACTTTCTGAAAAGAGGGTACAGACACGATGTTGTT
GAAAACACGTACAAAGACGTCCTGAAGATCAGCCGGGAATCTCTCTTtcg
ttcaaaagaaaaagataaacaagatCAACAATCCATCTTCGTCTGCACAT
GGCATCCAGCTCTCAGACACCTATCATCACTNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNGTTAAACGtctttgttattcaaa
aaaactgaagatgctctaagagagagcgaaatattttaaaccagtatgtt
tttattctgagcataaactttcgcgaatcgttggataaaaatgaggattt
tcgaataaaaatttccttaaaagtgaaaaataatccTTAAATATGACTAG
GACGGTTGCTCTTTGACTTCAAGAAGACATTAGAGGATAAGAATATGCTG
AAAATTGGATATTTATTACAATTTCGaggttttttagattttcaatattt
ttaagaatttttgcgcgagcataaactttcgcgaatcgccctgttaagaa
ttttcaatgacatttactttcgcgaaaaaggccaaaagtcgcgaaaatcg
cgagcgaaagtttgtacgcctaaagtatattCCACAATTTGAACTTTACT
GTAAACCTTGACTCTGGGGAATCTAGGATTCTTCAAACCTAATCCCATTG
GGTTTTGGACACTCTTAAGGGATAAAGAGTGAATAGTATAGTCATCATTG
CAGTAATGTATCTTTCTTTTAGAATCCTTGCATGCACACGTTAAAGAAGC
AACAAATTCTTCTACTATGCAGGAAATATCGACGGTGACAGCTATAAAAG
CATTTGATGGAAGAGAACTCTATGTTTCACAGTAAGCATGGTTTTCAGTA
TGGTGAAACAACACATTGGATAAAGGTTAGTAGTCCTAGCCTGTTTACCT
TCTTTTTAGCTCTATACTAACTGCTTCTGACGCATTCGAGTTATTTCTAT
TTTGagcgaatttttttattttgacttctGCAATTATTTACTTTATGCTC
TGATACAAAGGCCTTGTACGCTGAAAAGAAATGTCTTAAATATTGAAACG
CAAGATGACTTGTTCTCGTCCTAGCTGAGATTATTCCAAATAGTGAAAAA
ACCATTCTCTGTGTGTCTTTCTAAGACATGTCTTGTACAGGTAATCTTTC
CTGTAGTCTCTCTTTATACATTTCATTATTATTTTACACACCACAAAAGG
CCGAATTTCACAGTCGAGTTTTCATTGACTACGTTGTGTTTGTTAATCGT
ATGGATATTCCCTGGCATACTCGAAATTCTCACATTGACCTCAAGACTAT
TCTTTCCATCAACGGTGAGACCATCATGAGTTTGTTTGGGAACACTGGTG
AATTTGAAATCGAACGTCGAATGTTTATATGTATGCTTCAAGCAGATGGG
ATCTATGCTGTACAGCCACAAGCCGTTTCAAGAGATGCCATTAATATCAT
GGAGATTTGGGTCTATGGTGCTATTTTGTAAATTCGTTGACACATGTGAT
GGAATTATCTGAAAACATCTCGGGAAGATTACAGATCTTGGGCCCTTCCG
AAGTTCTATTATTCCGCTCCAAATTCTGTTATTTAAAATCATTACATTTG
AAATTGGGTAAATTGAAAATAGCAAATTAACTTCAATGTTCC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002750XLOC_002750Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004855-exon-sc0000049-1491911889:244914..244980TCONS_00004855-exon-sc0000049-1491911889:244914..244980Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1510915933:244914..244980TCONS_00004855-exon-sc0000049-1510915933:244914..244980Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1575043694:244914..244980TCONS_00004855-exon-sc0000049-1575043694:244914..244980Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1491911889:247786..247938TCONS_00004855-exon-sc0000049-1491911889:247786..247938Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1510915933:247786..247938TCONS_00004855-exon-sc0000049-1510915933:247786..247938Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1575043694:247786..247938TCONS_00004855-exon-sc0000049-1575043694:247786..247938Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1491911889:248263..248705TCONS_00004855-exon-sc0000049-1491911889:248263..248705Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1510915933:248263..248705TCONS_00004855-exon-sc0000049-1510915933:248263..248705Clytia hemisphaericaexon
TCONS_00004855-exon-sc0000049-1575043694:248263..248705TCONS_00004855-exon-sc0000049-1575043694:248263..248705Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:244914..248705 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.511887	1.02625	0.913151	0.700727	0	0.0869896	0.241323	0.376226	0	0	0	0	1.33199	1.03364	0.0443732	0	0.058663	0	1.25818	1.38265	1.41739	0.35159	0.819064	0.357207	0	0.828419	0	0	0	0.200957
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004855 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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