TCONS_00004897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004897
Unique NameTCONS_00004897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1478

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004897 ID=TCONS_00004897|Name=TCONS_00004897|organism=Clytia hemisphaerica|type=transcript|length=1478bp
ATTAATACAATTAATTAAAGAGCGTGGTATCAAAGGTATCCACGTAACCA
TTTATTGATTGAATTGGGGCAAAAAAGGGTACACCAATAACTTATATACC
CAGAATTGATGTACCAGTGGGGTTTCTGAAAATAACCTCTGTAGAAAACA
TTCTTTATTATTAACTATTGTTTTTGCTGACAGATATctaataatatttt
tgtcaaatccaCAACTCATTTCAAGATGAAGAGAAATTTTGAGTCCATCA
AGCTTGACGATGATGAAGACGATGACGTCTTAATTGTGAGCTCTTATAAA
AGAGACCAACAGAATCCTGCATCACAGCCAAGCACTACAGCATTGACATC
TGCAACACCAGCAACATCATCTACCATAACAACTATCACCACTTCGATCC
CTAAAACAATAACAATTACACTTGGGTCTTCTTTAAAGGCACCTTCTAGT
GCAACAAATACGCTACCTGGGCCGTCGAGCCTTTCCCATCCTCCATTTAG
ACCAGTGCAAGTTTTTGCAGGGCCATCAAGTATACGCAGTGGTTTGATGT
CTTTCAATCCTGGATCATCTGCCTCTTCCCCTAAGTCATCTTTCTTAATC
AACTCCATCAGAATGGGACCACCGTATCCATCAGGCATCAGAAATCGTAT
TCCTGTTCGACCCCCTGTTCAAAAGTTCCAACCTGGTCCAGCTAGGCCGA
TGAGCTTCAGGCACAGATTCTTCAATCCTCAAGAAACATCGCAACCATAC
GTGTCAACAATTGATTTATTGGATACTGACTCAAGTGGTGGTCCATCTAC
TGATCACAGTTCTGATGGTGAGGATGACAATGCAAGCACATCGTCAAACA
CTAATGATGCACCGCCTGAATCAACTCAAAGTAAAAAATCCACTCTTATT
GACTCGAGTAAAAAAGTATCACCTGATCAAAAGACAAAGAGTTCCGGAAT
GAGATCGTCAGCATCGTCAAAAAtaatcgaaccaatcatcATCGAGGATT
CCCCACCGAGCAGTCCCTCTTACAGCCCAGAATGCAGTCCACCTCACACC
AGTGAAGATCAAGTCAAACCTACACAAAATAAGAAAGTGAAAGTGGGCAT
GGGAATTACATATGGAGCTCAAGCTGAACCACAAGTTGATGCCATTAGTA
AAGAAACAGAAAGGATGCTTCAAAATTTGTTACCAAGTGAAGAAAGTGGT
GAAAATGATGAAGAACTATCAAATCTacttaaaacTGGTATGAATATGAT
TGATCCAGAAGATTTGCTTCAAAAGATGAAGCAATTACCAAATGATAAac
CAAAACGTTTGTACATCAAGGGGTTGTATTCGCAAGCAAAACATGGCAAT
ATACCAAGAGTGCTTTCCTTTTTATATGGTGGTACGAACCCTTGTGGAAT
CGTCAAAAACGAAGAAGGAAAAACTCCCCTACATATTGCAGCAAGCAAAG
GACATCTTGAAATTCTTTTACTTCTACT
Run BLAST on NCBI

protein sequence of TCONS_00004897-protein

>TCONS_00004897-protein ID=TCONS_00004897-protein|Name=TCONS_00004897-protein|organism=Clytia hemisphaerica|type=polypeptide|length=417bp
MKRNFESIKLDDDEDDDVLIVSSYKRDQQNPASQPSTTALTSATPATSST
ITTITTSIPKTITITLGSSLKAPSSATNTLPGPSSLSHPPFRPVQVFAGP
SSIRSGLMSFNPGSSASSPKSSFLINSIRMGPPYPSGIRNRIPVRPPVQK
FQPGPARPMSFRHRFFNPQETSQPYVSTIDLLDTDSSGGPSTDHSSDGED
DNASTSSNTNDAPPESTQSKKSTLIDSSKKVSPDQKTKSSGMRSSASSKI
IEPIIIEDSPPSSPSYSPECSPPHTSEDQVKPTQNKKVKVGMGITYGAQA
EPQVDAISKETERMLQNLLPSEESGENDEELSNLLKTGMNMIDPEDLLQK
MKQLPNDKPKRLYIKGLYSQAKHGNIPRVLSFLYGGTNPCGIVKNEEGKT
PLHIAASKGHLEILLLL
Run BLAST on NCBI

transcript from alignment at sc0000049:142176..145284-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004897 ID=TCONS_00004897|Name=TCONS_00004897|organism=Clytia hemisphaerica|type=transcript|length=3109bp|location=Sequence derived from alignment at sc0000049:142176..145284- (Clytia hemisphaerica)
ATTAATACAATTAATTAAAGAGCGTGGTATCAAAGGTATCCACGTAACCA
TTTATTGATTGAATTGGGGCAAAAAAGGGTACACCAATAACTTATATACC
CAGAATTGATGTACCAGTGGGGTTTCTGAAAATAACCTCTGTAGAAAACA
TTCTTTATTATTAACTATTGTTTTTGCTGACAGATATCTAATAATATTTT
TGTCAAATCCACAACTCATTTCAAGATGAAGAGAAATTTTGAGTCCATCA
AGCTTGACGATGATGAAGACGATGACGGTTTGATTTAAACTTTTGTCACT
TTTGTTAAGGTTTCTTTTCTTGTGCCTCAAGAGTTTTCTAGCAAAATTGG
TAACTGAACTATTGGTAAATGAACCGTTAAAAATATTTTAGATTTTTTTT
TTTCAACGTAAGATAACGAGCTTATTTTGATTTTCTTATAAAAAAATTGA
TTCGTAAAACATGAGCTTTACTAGTTATATGAAATTAATATCTGGATAAG
CAATGCAATCCATAACATTAAAACTTACGTCTTTTTTCAGTCTTAATTGT
GAGCTCTTATAAAAGAGACCAACAGAATCCTGCATCACAGCCAAGCACTA
CAGCATTGACATCTGCAACACCAGCAACATCATCTACCATAACAACTATC
ACCACTTCGATCCCTAAAACAATAACAATTACACTTGGGTCTTCTTTAAA
GGCACCTTCTAGTGCAACAAATACGCTACCTGGGCCGTCGAGCCTTTCCC
ATCCTCCATTTAGACCAGTGCAAGTTTTTGCAGGGCCATCAAGTATACGC
AGTGGTTTGATGTCTTTCAATCCTGGATCATCTGCCTCTTCCCCTAAGTC
ATCTTTCTTAATCAACTCCATCAGAATGGGACCACCGTATCCATCAGGCA
TCAGAAATCGTATTCCTGTTCGACCCCCTGTTCAAAAGTTCCAACCTGGT
CCAGCTAGGCCGATGAGCTTCAGGCACAGATTCTTCAATCCTCGTAAATC
AATTTCTTCATTTTTAATTGTTGATTTCTTGCATTTATTTCTTCTGTAGT
TTTTTATTATTTTACAGCAAGATTGGAAACACATTTTTGCGAATTATTTT
TTGTCAACTCAGGTCAACTGTATTTGATTATTTATCAGGAGTTGTTCAAA
CTTTTCCATTATTTTCTCGATAGAAGAAACATCGCAACCATACGTGTCAA
CAATTGATTTATTGGATACTGACTCAAGTGGTGGTCCATCTACTGATCAC
AGTTCTGATGGTGGTAAGTTTAGAAAAATTAATTAATTGCAATATTGGCT
CTTTTTTATTATTTTGAAGTTCTTAAAACACAATTTAAAACCAGCTTTAT
AAAATGTGAAAATGGCTCTATTGTCTTAAATTTATGTATTGACTCTTTCA
TTACTTTACTAAAAGAGGATGACAATGCAAGCACATCGTCAAACACTAAT
GATGCACCGCCTGAATCAACTCAAAGTAAAAAATCCACTCTTATTGACTC
GAGTAAAAAAGTATCACCTGATCAAAAGACAAAGAGTTCCGGAATGAGAT
CGTCAGCATCGTCAAAAAGTAAGTATTAAAGAAATTTCATAAAAAATTAC
TCAATACATAACCTTTGTTCTTTCAGAGGATTAAAGAATTATTTGCTTTT
TCTTCTAGTAATCGAACCAATCATCATCGAGGATTCCCCACCGAGCAGTC
CCTCTTACAGCCCAGAATGCAGTCCACCTCACACCAGTGAAGATCAAGTC
AAACCTACACAAAATAAGAAAGGTGTGGTATTTTCAGCTACCTAATTCTT
CTTAGCCGTTTGATTGGTATTATTGTAACAATACAGCAAATCAACCTTTT
ACGTATGACAATTCAAAAATCATTTTAATCAGATGTTTACACCATAAATT
ATTTTTTAAACAAAAATTCAATTGCTTTTATTATTTTACAGTGAAAGTGG
GCATGGGAATTACATATGGAGCTCAAGCTGAACCACAAGTTGATGCCATT
AGTAAAGAAACAGAAAGGTAAGATCTATATACTTTAATGGGATAGATTTT
CCCAAAATCTAATTCCAATGGAAATTTGGAAAGGTCTTATCCACGAAATT
CTTTTGAACAAAACTAAAACAATGTCAGACAATAATTACTTTTAAAATGT
ATAAAGACAAGAAATTATAAAGATTTGTCTTCTGAAAATGCCATCCATGA
AATAAAGTTTCCTCTAAATCTTAAAATTTTGCGGATGTGCTCAACGAAAA
TTTATCCCATTAATAATTGGCTACATTGGATGACTTGCTCAAATAATGAC
AAAATCATTTTTAAATGAATTTATATTTTAATTTCATCTCATTTTTTAAG
GATGCTTCAAAATTTGTTACCAAGTGAAGAAAGTGGTGAAAATGATGAAG
AACTATCAAATCTACTTAAAAGTAAGAAAATGCACTTAACATGTCCTTAC
CAATTTTTTAATTGCCGATTTTAGACAATGCGGTTTTTCATAATGTTTTG
AGGAAATCTTTGTGTGATTTTCCTTACTATACTTTTTGATCACCTGAAGA
TATAGTCTATTCGACCATATTTGATTTTTAAGCTGGTATGAATATGATTG
ATCCAGAAGATTTGCTTCAAAAGATGAAGCAATTACCAAATGATAAGTGA
GTTTTTGTTATTATTTTCAAGTTATTGAACTCACTACACTCGCGATGAAT
CGTTCATGCAAGGCATACTTTTTAAGAATTTTGAAATATTTTTCTTTCTT
TTTCAGACCAAAACGTTTGTACATCAAGGGGTTGTATTCGCAAGCAAAAC
ATGGCAATATACCAAGAGTGCTTTCCTTTTTATGTAAGGGTCTTATTTCA
TCAGCAAAGTAATTGTATCGATGTGGTCTTATGTTGTTTTCCTTTAATAT
GTAGCTCATTTTGACATGAGAAGGAAAAGTATAACTTTTTTTATTTGAAA
ATATTATTCAAGCTTTGGCTATCATATGTTACGCTTTTTATTTTTTTGCA
CCTTAGATGGTGGTACGAACCCTTGTGGAATCGTCAAAAACGAAGAAGGA
AAAACTCCCCTACATATTGCAGCAAGCAAAGGACATCTTGAAATTCTTTT
ACTTCTACT

Coding sequence (CDS) from alignment at sc0000049:142176..145284-

>TCONS_00004897 ID=TCONS_00004897|Name=TCONS_00004897|organism=Clytia hemisphaerica|type=CDS|length=1251bp|location=Sequence derived from alignment at sc0000049:142176..145284- (Clytia hemisphaerica)
ATGAAGAGAAATTTTGAGTCCATCAAGCTTGACGATGATGAAGACGATGA
CGTCTTAATTGTGAGCTCTTATAAAAGAGACCAACAGAATCCTGCATCAC
AGCCAAGCACTACAGCATTGACATCTGCAACACCAGCAACATCATCTACC
ATAACAACTATCACCACTTCGATCCCTAAAACAATAACAATTACACTTGG
GTCTTCTTTAAAGGCACCTTCTAGTGCAACAAATACGCTACCTGGGCCGT
CGAGCCTTTCCCATCCTCCATTTAGACCAGTGCAAGTTTTTGCAGGGCCA
TCAAGTATACGCAGTGGTTTGATGTCTTTCAATCCTGGATCATCTGCCTC
TTCCCCTAAGTCATCTTTCTTAATCAACTCCATCAGAATGGGACCACCGT
ATCCATCAGGCATCAGAAATCGTATTCCTGTTCGACCCCCTGTTCAAAAG
TTCCAACCTGGTCCAGCTAGGCCGATGAGCTTCAGGCACAGATTCTTCAA
TCCTCAAGAAACATCGCAACCATACGTGTCAACAATTGATTTATTGGATA
CTGACTCAAGTGGTGGTCCATCTACTGATCACAGTTCTGATGGTGAGGAT
GACAATGCAAGCACATCGTCAAACACTAATGATGCACCGCCTGAATCAAC
TCAAAGTAAAAAATCCACTCTTATTGACTCGAGTAAAAAAGTATCACCTG
ATCAAAAGACAAAGAGTTCCGGAATGAGATCGTCAGCATCGTCAAAAATA
ATCGAACCAATCATCATCGAGGATTCCCCACCGAGCAGTCCCTCTTACAG
CCCAGAATGCAGTCCACCTCACACCAGTGAAGATCAAGTCAAACCTACAC
AAAATAAGAAAGTGAAAGTGGGCATGGGAATTACATATGGAGCTCAAGCT
GAACCACAAGTTGATGCCATTAGTAAAGAAACAGAAAGGATGCTTCAAAA
TTTGTTACCAAGTGAAGAAAGTGGTGAAAATGATGAAGAACTATCAAATC
TACTTAAAACTGGTATGAATATGATTGATCCAGAAGATTTGCTTCAAAAG
ATGAAGCAATTACCAAATGATAAACCAAAACGTTTGTACATCAAGGGGTT
GTATTCGCAAGCAAAACATGGCAATATACCAAGAGTGCTTTCCTTTTTAT
ATGGTGGTACGAACCCTTGTGGAATCGTCAAAAACGAAGAAGGAAAAACT
CCCCTACATATTGCAGCAAGCAAAGGACATCTTGAAATTCTTTTACTTCT
A
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002772XLOC_002772Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004897-proteinTCONS_00004897-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004897-exon-sc0000049-1575043694:145008..145284TCONS_00004897-exon-sc0000049-1575043694:145008..145284Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:144292..144744TCONS_00004897-exon-sc0000049-1575043694:144292..144744Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:144022..144111TCONS_00004897-exon-sc0000049-1575043694:144022..144111Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:143717..143869TCONS_00004897-exon-sc0000049-1575043694:143717..143869Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:143513..143626TCONS_00004897-exon-sc0000049-1575043694:143513..143626Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:143268..143343TCONS_00004897-exon-sc0000049-1575043694:143268..143343Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:142864..142934TCONS_00004897-exon-sc0000049-1575043694:142864..142934Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:142639..142702TCONS_00004897-exon-sc0000049-1575043694:142639..142702Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:142452..142528TCONS_00004897-exon-sc0000049-1575043694:142452..142528Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1575043694:142176..142278TCONS_00004897-exon-sc0000049-1575043694:142176..142278Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:145008..145284TCONS_00004897-exon-sc0000049-1510915933:145008..145284Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:144292..144744TCONS_00004897-exon-sc0000049-1510915933:144292..144744Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:144022..144111TCONS_00004897-exon-sc0000049-1510915933:144022..144111Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:143717..143869TCONS_00004897-exon-sc0000049-1510915933:143717..143869Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:143513..143626TCONS_00004897-exon-sc0000049-1510915933:143513..143626Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:143268..143343TCONS_00004897-exon-sc0000049-1510915933:143268..143343Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:142864..142934TCONS_00004897-exon-sc0000049-1510915933:142864..142934Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:142639..142702TCONS_00004897-exon-sc0000049-1510915933:142639..142702Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:142452..142528TCONS_00004897-exon-sc0000049-1510915933:142452..142528Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1510915933:142176..142278TCONS_00004897-exon-sc0000049-1510915933:142176..142278Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:145008..145284TCONS_00004897-exon-sc0000049-1491911889:145008..145284Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:144292..144744TCONS_00004897-exon-sc0000049-1491911889:144292..144744Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:144022..144111TCONS_00004897-exon-sc0000049-1491911889:144022..144111Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:143717..143869TCONS_00004897-exon-sc0000049-1491911889:143717..143869Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:143513..143626TCONS_00004897-exon-sc0000049-1491911889:143513..143626Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:143268..143343TCONS_00004897-exon-sc0000049-1491911889:143268..143343Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:142864..142934TCONS_00004897-exon-sc0000049-1491911889:142864..142934Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:142639..142702TCONS_00004897-exon-sc0000049-1491911889:142639..142702Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:142452..142528TCONS_00004897-exon-sc0000049-1491911889:142452..142528Clytia hemisphaericaexon
TCONS_00004897-exon-sc0000049-1491911889:142176..142278TCONS_00004897-exon-sc0000049-1491911889:142176..142278Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:142176..145284 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.63444	2.9989	0.917984	0.960042	13.3465	10.6061	10.0282	11.9457	7.44465	8.52105	7.10943	5.60443	6.45194	5.65769	6.01664	6.61011	7.36658	6.43191	3.4177	3.98067	4.59521	4.07404	5.54555	6.49886	6.78372	7.25981	2.03175	1.51375	4.62352	5.72232
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR020683Ankyrin_rpt-contain_dom
IPR002110Ankyrin_rpt
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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