TCONS_00005034 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005034
Unique NameTCONS_00005034
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2745

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005034 ID=TCONS_00005034|Name=TCONS_00005034|organism=Clytia hemisphaerica|type=transcript|length=2745bp
aaaagaaaaagatttagaaaaggATGGATGAAATATACGCAGCGATTAAG
AAGAAGGATTTGACCTCCTTGTCCAACCTGATTACCAGCAAGAACATCAA
CACATCTGACAAATCGAAACAAACACCTCTGACGTTAGCTTGCGAACAAG
GTCATTTAGATGTCGTCAAGTTTCTCGTTGAAGATAAGAAAGCAAACGTA
GATCGAAAAGATGGTAAATCAAATACACCTTTGTATGTAGCTTGTCTTGC
CGATCACCGACCCATCATCACTTACTTGCTAGAGAAGAATGCGGATATCA
ATAAACCGGCAAGGAATAACTTCACTCCTGTTTATGCTGCAGTTGAGAAA
GATAATCTAGAGTTGCTTGAATATCTTGTGTCAGTCAAAGCTGATTTAAA
TGCCAAATGTTCCAGAGGTGGATTAATCAGACACGCCTGCTGCAAATGTG
ATGCACCAAAATGTTTCGATTACTTGTTAAAGAAGAAGCTTGATCTGAAC
ACTTACCATGAACAATTGGAACAGTATCTTAGCTTTGAGCTGTCTTTCCA
ATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCATGGAGT
ACCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTAAGTAAA
ACCAAAGGTCGCGAAGAAACACCCCTTCATGTCGCTGCTAAATGTGTCGA
CAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGAACCAAA
AATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTGGAGCGT
AGTAAGGACCCGAAAGCAGAAAGTGCACGCAAAGTGATGCCCATAGAATG
TGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCCGAATGCTG
CCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTACGGCTTG
AAGGAGGATGCCCAattcctaaaaatgttcttggaAAATGGAGCGGACGT
TAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAGCTGGTA
AACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGTCATGGG
GCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCACTTGGT
TGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAACTGCCTT
GGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAAGAAGGC
GATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGTCTTTAA
ATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGAAAGGTG
AAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACGGGGCAAGG
TGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAATTGCGA
CGAACCTGccgattttccaaaatttgaccTTTACCTCAAAGATAAGAAAG
GTCAAGATTtttatgatattcttatgaaagGTGGTTACGGGTACAATTGG
AAAAAGcagtttgatttgttgaaacaGAATGGCTATGATACACCAACATT
AGACAGgTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGAAAATATGG
ATGTAAGTGGTGGTAGAGCTGCTGGCGGATTTGATTCGGTAAGACAGCTA
GCATCTAGAGGTGCGCCTGCCCGAGGTGTTCCTTCGAGAGGTGCAGGCAA
CAGAGCTATGAAATTCGATATGGGATCCCAATCCAAACGTACAACAGGTT
CAAGACCAATTGCTGAACGATCGCCACTGACTCCTACAAAATCACCGAAA
TCATCTCCTTCAAACGAAGTCAATAATGAGAAAAAGACAGCCGGACCGCC
TTTAAAAGCGACGCCGGAGACGGAACCGAAACCAGAACCAGAGCCAGAAC
CGGAGCCAGAACCGGAGCCGGAACCAAAACAGGCGGAAGAGGCGGAAGAG
GACGAAGACGCCCCAAAGGATGTGATGATTTCTTACAACTGGGGTCACCA
AGCAACGGCATTCAAGATACGTGATTACTTGCGCGATAACAGCAAACTGT
CCGTATGGATTGACACGGAGAAAATGTCAGGTGACATTTACGGGAAAATG
GCGCAAGCGGTTTACAAGTCCAAGGTTATTGTTATGTGTTTGAGTGAAAA
GTATGAGATGTCGGATAATTGTAAGTTTGAGTACGAATATGCTgccaaga
agaagaagaattttgTGCCAGTAATGGTTCAACCAGATTATGAGCCGAGA
GGAGGGTTCAGTTTGGATATGATTTTGGGAAGCAAGTTGTATTATGAGCT
ATTCGAGGAGAAAGACTTTAAGGAAAACATTCCGAATGTTTTGAAAGCTA
TTCAAGGAGTTTTGGAAAAGATGTAAGTTCTAACGCTTCAGAATTTAGAA
GACGATGGAGTTTTTTTGCTAATTATTACCTAGTTTACATATTGATTGTA
CATACCGTGTGTTGTGTGTTATTTAGTATTAAGATTTTGTAGTCATGTTT
TtattaatgtttatttttaggGTTTCTTTAATAGATTTGTTAacataaat
tttctttctttagtaCTCTATATGTAGGAGATGtgagggagtttctaaac
atcgaccagaaatggcgaccacgacaggcgaccagataaatttgggttat
cgagtttacctgctctctccaccgtagagaacatccaaatcgagt
Run BLAST on NCBI

protein sequence of TCONS_00005034-protein

>TCONS_00005034-protein ID=TCONS_00005034-protein|Name=TCONS_00005034-protein|organism=Clytia hemisphaerica|type=polypeptide|length=800bp
MDEIYAAIKKKDLTSLSNLITSKNINTSDKSKQTPLTLACEQGHLDVVKF
LVEDKKANVDRKDGKSNTPLYVACLADHRPIITYLLEKNADINKPARNNF
TPVYAAVEKDNLELLEYLVSVKADLNAKCSRGGLIRHACCKCDAPKCFDY
LLKKKLDLNTYHEQLEQYLSFELSFQYLARRKDEARAKTTMEYLKKLLKA
GADTSLLSKTKGREETPLHVAAKCVDNELMSVLLEHGANVNQKSANGATP
LLSLFFLERSKDPKAESARKVMPIECVQTLFKYKADPNIPNAAGVTPFLY
FMSSFFYGLKEDAQFLKMFLENGADVNVSDFAGEKPIHFAAGKQGTKVID
CIKMLVSHGADINTPDGNGENVIHLVARRQESSRMSFFEELPWDVLIENG
AKIKANKEGDYPHFVAFMSNRFEVFKSMLKNGIDINVRNKKGETFLHMLL
RRYIENGARWGQDPVEETIQRMANCDEPADFPKFDLYLKDKKGQDFYDIL
MKGGYGYNWKKQFDLLKQNGYDTPTLDRWNRRMREGDNPENMDVSGGRAA
GGFDSVRQLASRGAPARGVPSRGAGNRAMKFDMGSQSKRTTGSRPIAERS
PLTPTKSPKSSPSNEVNNEKKTAGPPLKATPETEPKPEPEPEPEPEPEPE
PKQAEEAEEDEDAPKDVMISYNWGHQATAFKIRDYLRDNSKLSVWIDTEK
MSGDIYGKMAQAVYKSKVIVMCLSEKYEMSDNCKFEYEYAAKKKKNFVPV
MVQPDYEPRGGFSLDMILGSKLYYELFEEKDFKENIPNVLKAIQGVLEKM
Run BLAST on NCBI

transcript from alignment at sc0000050:63492..68699-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005034 ID=TCONS_00005034|Name=TCONS_00005034|organism=Clytia hemisphaerica|type=transcript|length=5208bp|location=Sequence derived from alignment at sc0000050:63492..68699- (Clytia hemisphaerica)
AAAAGAAAAAGATTTAGAAAAGGATGGATGAAATATACGCAGCGATTAAG
AAGAAGGATTTGACCTCCTTGTCCAACCTGATTACCAGCAAGAACATCAA
CACATCTGACAAATCGAAACAAACACCTCTGACGTTAGCTTGCGAACAAG
GTCATTTAGATGTCGTCAAGTTTCTCGTTGAAGATAAGAAAGCAAACGTA
GATCGAAAAGATGGTAAATCAAATACACCTTTGTATGTAGCTTGTCTTGC
CGATCACCGACCCATCATCACTTACTTGCTAGAGAAGAATGCGGATATCA
ATAAACCGGCAAGGAATAACTTCACTCCTGTTTATGCTGCAGTTGAGAAA
GATAATCTAGAGTTGCTTGAATATCTTGTGTCAGTCAAAGCTGATTTAAA
TGCCAAATGTTCCAGAGGTGGATTAATCAGACACGCCTGCTGCAAATGTG
ATGCACCAAAATGTTTCGATTACTTGTTAAAGAAGAAGCTTGATCTGAAC
ACTTACCATGAACAATTGGAACAGTATCTTAGCTTTGAGCTGTCTTTCCA
ATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCATGGAGT
ACCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTAAGTAAA
ACCAAAGGTCGCGAAGAAACACCCCTTCATGTCGCTGCTAAATGTGTCGA
CAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGAACCAAA
AATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTGGAGCGT
AGTAAGGACCCGAAAGCAGAAAGTGCACGCAAAGTGATGCCCATAGAATG
TGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCCGAATGCTG
CCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTACGGCTTG
AAGGAGGATGCCCAATTCCTAAAAATGTTCTTGGAAAATGGAGCGGACGT
TAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAGCTGGTA
AACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGTCATGGG
GCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCACTTGGT
TGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAACTGCCTT
GGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAAGAAGGC
GATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGTCTTTAA
ATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGAAAGGTG
AAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACGGGGCAAGG
TGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAATTGCGA
CGAACCTGCCGATTTTCCAAAATTTGACCTTTACCTCAAAGATAAGAAAG
GTCAAGATTTTTATGATATTCTTATGAAAGGTGGTTACGGGTACAATTGG
AAAAAGCAGTTTGATTTGTTGAAACAGAATGGCTATGATACACCAACATT
AGACAGGTATGCAATTTTTATTTTCCTAAAGTGGACGTAAAGTTTTCCAA
AAAAGATAGAGGTTTAGAAATCATGACAACTTTTTGGAATATTTGATAAT
GGGGCCTCTGTGGTTCATTTCTGCTAATTTGAGTTGTTTTTGGCAGTTCT
AGCCCTACTTCGATGGCTCTAACTTTTTCTCCAGCAAAAAAAATCTTCAT
CCTCTACCTACTTGTTTTTAAATGCATACTTTTGAGACTACCTTAAATAA
ATAATAATTGATATCTTTCGTTGCGTTCCAAAATCTTCCTGGTGAACTTT
GATTTCAGGGAATATTATGTAAGTAACTCCCTATGTCGAATATTTAACCT
TGACTTATAGATATTTGCTTTGTGCCCAATTTTATATTGTTTCTTTTATT
TCAAAGGTGGAACCGTCGTATGCGAGAAGGCGATAACCCGGAAAATATGG
ATGTAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTTGAT
CTGAACACTTACCATGGACAATTGGAACAGTATCTTAGCTTTGAGCTGTC
TTTCCAATACCTTGCTCGACGAAAAGATGAAGCAAGAGCCAAAACCACCA
TGGAGTATCTCAAAAAGCTACTCAAGGCGGGTGCAGATACATCACTCTTA
AGTAAAACCAAAGGTCGCGAAGAAACACCCCTTCATATCGCTGCTAAATG
TGTCGACAATGAATTGATGTCAGTTCTATTGGAGCATGGTGCTAACGTGA
ACCAAAAATCTGCAAACGGTGCCACACCCTTGCTCTCTTTGTTTTTCTTG
GAGCGTAGTAAGGACCCGAAAGCAGAAAATGCACGCAAAGTGATGCCCAT
AGAGTGTGTACAGACACTTTTCAAATACAAAGCTGACCCGAACATCCCGA
ATGCTGCCGGTGTTACACCGTTTCTCTACTTCATGTCGTCTTTTTTCTAC
GGCTTGAAGGAGGATGCCCAATTCCTAAAAATGTTCTTGGAAAATGGAGC
GGACGTTAATGTCAGTGATTTTGCTGGTGAGAAACCGATCCATTTTGCAG
CTGGTAAACAGGGCACGAAAGTCATTGATTGCATCAAGATGTTAGTTAGT
CATGGGGCGGATATCAATACGCCTGATGGGAATGGTGAAAATGTCATCCA
CTTGGTTGCTAGAAGACAAGAGAGTAGCCGTATGTCCTTTTTTGAAGAAC
TGCCTTGGGATGTTTTGATTGAGAATGGTGCGAAGATTAAAGCTAACAAA
GAAGGCGATTATCCTCATTTCGTAGCTTTTATGTCCAATCGATTTGAAGT
CTTTAAATCTATGCTTAAAAATGGTATTGACATCAATGTGCGAAACAAGA
AAGGTGAAACATTTCTTCACATGTTGCTTCGACGATATATTGAAAACGGG
GCAAGGTGGGGACAGGATCCAGTCGAAGAAACGATTCAACGCATGGCCAA
TTGCGACGATCCTGCCGATTTTCCAAAATTTGACCTTTACCTCAAAGATA
AGAAAGGTCAAGATTTTTATGATATTCTTATGAAAGGTGGTTACGGGTAC
AATTGGAGAAAGCAGTTTGATTTGTTGAAACAGAATGGCTATGATACACC
AACATTAGACAGGTATGCAATTTTTATTTTCCTAAACTGGACGGATTTAG
AAATCATGACAACTTTTTGGAATATTTGATAATGGTGCCTCTGTGGCTCA
TTTCTGCTAATTTGAGTTGTTTTTGGCAGTTCTAGCCCTACTTCGATGGC
TCTAACTTTTTCTCCAGCAAAAAAATTCTTCATCCTCTACTACTTGTTTT
TAAATGCATACTTTTGAGACTACCTTAAATAAATAATAATTGATATCTTT
TGTTGCGCTCCAAAATCTTCCTGATGAACTTTGAAGTAACTCCCTATGTC
GAATATTTAACCTTGACTTTTAGATATTTGCTTTGTGCCCAATTTTATAT
TGTTTCTTTTATTTCAAAGGTGGAACCGTCGTATGCGAGAAGGCGATAAC
CCGGAAAATATGGATGTAAGTGGTGGTAGAGCTGCTGGCGGATTTGATTC
GGTAAGACAGCTAGCATCTAGAGGTGCGCCTGCCCGAGGTGTTCCTTCGA
GAGGTGCAGGCAACAGAGCTATGAAATTCGATATGGGATCCCAATCCAAA
CGTACAACAGGTTCAAGACCAATTGCTGAACGATCGCCACTGACTCCTAC
AAAATCACCGAAATCATCTCCTTCAAACGAAGTCAATAATGAGAAAAAGA
CAGCCGGACCGCCTTTAAAAGCGACGCCGGAGACGGAACCGAAACCAGAA
CCAGAGCCAGAACCGGAGCCAGAACCGGAGCCGGAACCAAAACAGGCGGA
AGAGGCGGAAGAGGACGAAGACGCCCCAAAGGATGTGATGATTTCTTACA
ACTGGGGTCACCAAGCAACGGCATTCAAGATACGTGATTACTTGCGCGAT
AACAGCAAACTGTCCGTATGGATTGACACGGAGAAAATGTCAGGTGACAT
TTACGGGAAAATGGCGCAAGCGGTTTACAAGTCCAAGGTTATTGTTATGT
GTTTGAGTGAAAAGTATGAGATGTCGGATAATTGTAAGTTTGAGTACGAA
TATGCTGCCAAGAAGAAGAAGAATTTTGTGCCAGTAATGGTTCAACCAGA
TTATGAGCCGAGAGGAGGGTTCAGTTTGGATATGATTTTGGGAAGCAAGT
TGTATTATGAGCTATTCGAGGAGAAAGACTTTAAGGAAAACATTCCGAAT
GTTTTGAAAGCTATTCAAGGAGTTTTGGAAAAGATGTAAGTTCTAACGCT
TCAGAATTTAGAAGACGATGGAGTTTTTTTGCTAATTATTACCTAGTTTA
CATATTGATTGTACATACCGTGTGTTGTGTGTTATTTAGTATTAAGATTT
TGTAGTCATGTTTTTATTAATGTTTATTTTTAGGGTTTCTTTAATAGATT
TGTTAACATAAATTTTCTTTCTTTAGTACTCTATATGTAGGAGATGTGAG
GGAGTTTCTAAACATCGACCAGAAATGGCGACCACGACAGGCGACCAGAT
AAATTTGGGTTATCGAGTTTACCTGCTCTCTCCACCGTAGAGAACATCCA
AATCGAGT

Coding sequence (CDS) from alignment at sc0000050:63492..68699-

>TCONS_00005034 ID=TCONS_00005034|Name=TCONS_00005034|organism=Clytia hemisphaerica|type=CDS|length=2403bp|location=Sequence derived from alignment at sc0000050:63492..68699- (Clytia hemisphaerica)
ATGGATGAAATATACGCAGCGATTAAGAAGAAGGATTTGACCTCCTTGTC
CAACCTGATTACCAGCAAGAACATCAACACATCTGACAAATCGAAACAAA
CACCTCTGACGTTAGCTTGCGAACAAGGTCATTTAGATGTCGTCAAGTTT
CTCGTTGAAGATAAGAAAGCAAACGTAGATCGAAAAGATGGTAAATCAAA
TACACCTTTGTATGTAGCTTGTCTTGCCGATCACCGACCCATCATCACTT
ACTTGCTAGAGAAGAATGCGGATATCAATAAACCGGCAAGGAATAACTTC
ACTCCTGTTTATGCTGCAGTTGAGAAAGATAATCTAGAGTTGCTTGAATA
TCTTGTGTCAGTCAAAGCTGATTTAAATGCCAAATGTTCCAGAGGTGGAT
TAATCAGACACGCCTGCTGCAAATGTGATGCACCAAAATGTTTCGATTAC
TTGTTAAAGAAGAAGCTTGATCTGAACACTTACCATGAACAATTGGAACA
GTATCTTAGCTTTGAGCTGTCTTTCCAATACCTTGCTCGACGAAAAGATG
AAGCAAGAGCCAAAACCACCATGGAGTACCTCAAAAAGCTACTCAAGGCG
GGTGCAGATACATCACTCTTAAGTAAAACCAAAGGTCGCGAAGAAACACC
CCTTCATGTCGCTGCTAAATGTGTCGACAATGAATTGATGTCAGTTCTAT
TGGAGCATGGTGCTAACGTGAACCAAAAATCTGCAAACGGTGCCACACCC
TTGCTCTCTTTGTTTTTCTTGGAGCGTAGTAAGGACCCGAAAGCAGAAAG
TGCACGCAAAGTGATGCCCATAGAATGTGTACAGACACTTTTCAAATACA
AAGCTGACCCGAACATCCCGAATGCTGCCGGTGTTACACCGTTTCTCTAC
TTCATGTCGTCTTTTTTCTACGGCTTGAAGGAGGATGCCCAATTCCTAAA
AATGTTCTTGGAAAATGGAGCGGACGTTAATGTCAGTGATTTTGCTGGTG
AGAAACCGATCCATTTTGCAGCTGGTAAACAGGGCACGAAAGTCATTGAT
TGCATCAAGATGTTAGTTAGTCATGGGGCGGATATCAATACGCCTGATGG
GAATGGTGAAAATGTCATCCACTTGGTTGCTAGAAGACAAGAGAGTAGCC
GTATGTCCTTTTTTGAAGAACTGCCTTGGGATGTTTTGATTGAGAATGGT
GCGAAGATTAAAGCTAACAAAGAAGGCGATTATCCTCATTTCGTAGCTTT
TATGTCCAATCGATTTGAAGTCTTTAAATCTATGCTTAAAAATGGTATTG
ACATCAATGTGCGAAACAAGAAAGGTGAAACATTTCTTCACATGTTGCTT
CGACGATATATTGAAAACGGGGCAAGGTGGGGACAGGATCCAGTCGAAGA
AACGATTCAACGCATGGCCAATTGCGACGAACCTGCCGATTTTCCAAAAT
TTGACCTTTACCTCAAAGATAAGAAAGGTCAAGATTTTTATGATATTCTT
ATGAAAGGTGGTTACGGGTACAATTGGAAAAAGCAGTTTGATTTGTTGAA
ACAGAATGGCTATGATACACCAACATTAGACAGGTGGAACCGTCGTATGC
GAGAAGGCGATAACCCGGAAAATATGGATGTAAGTGGTGGTAGAGCTGCT
GGCGGATTTGATTCGGTAAGACAGCTAGCATCTAGAGGTGCGCCTGCCCG
AGGTGTTCCTTCGAGAGGTGCAGGCAACAGAGCTATGAAATTCGATATGG
GATCCCAATCCAAACGTACAACAGGTTCAAGACCAATTGCTGAACGATCG
CCACTGACTCCTACAAAATCACCGAAATCATCTCCTTCAAACGAAGTCAA
TAATGAGAAAAAGACAGCCGGACCGCCTTTAAAAGCGACGCCGGAGACGG
AACCGAAACCAGAACCAGAGCCAGAACCGGAGCCAGAACCGGAGCCGGAA
CCAAAACAGGCGGAAGAGGCGGAAGAGGACGAAGACGCCCCAAAGGATGT
GATGATTTCTTACAACTGGGGTCACCAAGCAACGGCATTCAAGATACGTG
ATTACTTGCGCGATAACAGCAAACTGTCCGTATGGATTGACACGGAGAAA
ATGTCAGGTGACATTTACGGGAAAATGGCGCAAGCGGTTTACAAGTCCAA
GGTTATTGTTATGTGTTTGAGTGAAAAGTATGAGATGTCGGATAATTGTA
AGTTTGAGTACGAATATGCTGCCAAGAAGAAGAAGAATTTTGTGCCAGTA
ATGGTTCAACCAGATTATGAGCCGAGAGGAGGGTTCAGTTTGGATATGAT
TTTGGGAAGCAAGTTGTATTATGAGCTATTCGAGGAGAAAGACTTTAAGG
AAAACATTCCGAATGTTTTGAAAGCTATTCAAGGAGTTTTGGAAAAGATG
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002850XLOC_002850Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005034-proteinTCONS_00005034-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005034-exon-sc0000050-1575043694:67094..68699TCONS_00005034-exon-sc0000050-1575043694:67094..68699Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1575043694:66671..66693TCONS_00005034-exon-sc0000050-1575043694:66671..66693Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1575043694:63492..64607TCONS_00005034-exon-sc0000050-1575043694:63492..64607Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1510915933:67094..68699TCONS_00005034-exon-sc0000050-1510915933:67094..68699Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1510915933:66671..66693TCONS_00005034-exon-sc0000050-1510915933:66671..66693Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1510915933:63492..64607TCONS_00005034-exon-sc0000050-1510915933:63492..64607Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1491911889:67094..68699TCONS_00005034-exon-sc0000050-1491911889:67094..68699Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1491911889:66671..66693TCONS_00005034-exon-sc0000050-1491911889:66671..66693Clytia hemisphaericaexon
TCONS_00005034-exon-sc0000050-1491911889:63492..64607TCONS_00005034-exon-sc0000050-1491911889:63492..64607Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000050supercontigsc0000050:63492..68699 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00453477	0.0226365	0.031527	0.0333254	41.5259	49.96	81.8057	88.2873	44.0823	57.3266	21.5068	19.222	5.24856	4.81784	2.2366	0.124917	0.0900509	0.0723698	10.7247	8.74994	0.0306453	0.0420403	0.00330473	0.00119974	0	0.00651413	0.00238071	0.0036128	0.00581164	0.0106117
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR002110Ankyrin_rpt
IPR020683Ankyrin_rpt-contain_dom
IPR000157TIR_dom
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: Biological Process
TermDefinition
GO:0007165signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007165 signal transduction
molecular_function GO:0005515 protein binding
Blast
[Close]
BLAST of TCONS_00005034 vs. Swiss-Prot (Human)
Match: ANK3 (Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3)

HSP 1 Score: 119.398 bits (298), Expect = 4.763e-27
Identity = 120/523 (22.94%), Postives = 221/523 (42.26%), Query Frame = 3 
Query:   93 NINTSDKSKQTPLTLACEQGHLDVVKFLVEDKKANVDRKDGKSNTPLYVACLADHRPIITYLLEKNADINKPARNNFTPVYAAVEKDNLELLEYLVSVKADLNAKCSRGGLIRHACCKCDAPKCFDYLLKKKLDLNTYHEQLEQYL-------SFELSFQYLARRKDEARAK------------------TTMEYLKKLLKAGADTSLLSK------TKGREETPLHVAAKCVDNELMSVLLEHGANVNQKSANGATPL----------LSLFFLERSKDPKAESARKVMPIE---------CVQTLFKY---------------------------------KADPNIPNAAGVTPFLYFMSSFFYGLKEDAQFLKMFLENGADVNVSDFAGEKPIHFAA--GKQGTKVIDCIKMLVSHGADINTPDGNGENVIHLVARRQESSRMSFFEELPWDVLIENGAKIKANKEGDY-PHFVAFMSNRFEVFKSMLKNGIDINVRNKKGETFLHMLLRRYIENGARW 1403
            +IN  +++    L LA ++GH++VV  L++ ++ANVD    K NT L++A LA    ++  L+   A++N  ++N FTP+Y A ++++LE++++L+   A  +     G               F  L    + L   H+Q+   L          L   ++A RKD+ +A                   T +            T LL++      T   + TPLHVA+K  +  ++ +LL+ GA ++ K+ +G TPL          +    L+R+    +++   + P+          CVQ L ++                                 KA+PN     G TP            K   + +++ L++GA +     +G  PIH AA  G      ++ +  L+ HGA  NT +  GE  +H+ AR  ++  + +        L+++GA+++A  + D  P  ++    + ++ + +L+ G   N     G T LH+  R   E+ A +
Sbjct:   66 DINICNQNGLNALHLASKEGHVEVVSELLQ-REANVDAATKKGNTALHIASLAGQAEVVKVLVTNGANVNAQSQNGFTPLYMAAQENHLEVVKFLLDNGASQSLATEDG---------------FTPL---AVALQQGHDQVVSLLLENDTKGKVRLPALHIAARKDDTKAAALLLQNDNNADVESKSGFTPLHIAAHYGNINVATLLLNRAAAVDFTARNDITPLHVASKRGNANMVKLLLDRGAKIDAKTRDGLTPLHCGARSGHEQVVEMLLDRAAPILSKTKNGLSPLHMATQGDHLNCVQLLLQHNVPVDDVTNDYLTALHVAAHCGHYKVAKVLLDKKANPNAKALNGFTPL------HIACKKNRIKVMELLLKHGASIQAVTESGLTPIHVAAFMGH-----VNIVSQLMHHGASPNTTNVRGETALHMAARSGQAEVVRY--------LVQDGAQVEAKAKDDQTPLHISARLGKADIVQQLLQQGASPNAATTSGYTPLHLSAREGHEDVAAF 550
The following BLAST results are available for this feature:
BLAST of TCONS_00005034 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ANK34.763e-2722.94Ankyrin-3 OS=Homo sapiens GN=ANK3 PE=1 SV=3[more]
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