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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=transcript|length=797bp
ATTGCATAGTCTGaactttgtttatattttctttcataACTAGTGAATAT
AAAAAGTGAATCAACTGTATCTGTGAAAGAAGAATATTGTCTTTCAAAAT
GCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTTGTAGTACAT
GTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCAAAAAATGAT
CGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTACAAAAGACAG
GGTTGCTGATGCGGTTTTTAAgaacaaagttgaaaaaaacaCAATCTTCA
TCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTATCCTTCACGA
AAAGAACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAAATCTCCCTCA
AAAGTCACTACCCATAGCAGACACACCACAGCGATCAACGACATCAATAC
AGAAACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAGTATTGTTGAT
AAGAAATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTGACAAATTGAA
GCTCCCTCGTGGCTGGAAAATTACCCATCATGAACAGCTGACTGAAGTCG
TCAAGGAGGATGAAAGTCTATCCATACCGGCCTTCCAAATATTCATCAAC
AGTAACACAGACTTGAGCATCAATCTACGTTGCTATGGCTGGTTGCTGCC
AAAGGAATCACCAATTATGAAAGAAATTGATTCCTTAAATGACATTTACT
TGTCCGATTATATTCAAGTTTTGGAAAGCTATCATCTTTGTAAAggt Run BLAST on NCBI protein sequence of TCONS_00005052-protein >TCONS_00005052-protein ID=TCONS_00005052-protein|Name=TCONS_00005052-protein|organism=Clytia hemisphaerica|type=polypeptide|length=233bp
MPGRGNGAHCAIFGCSTCRKHGLSLFRLPTAKNDRFAQWRSDMINSITKD
RVADAVFKNKVEKNTIFICERHFREEDMYHYPSRKELRAEAYPLPTQNLP
QKSLPIADTPQRSTTSIQKRDQYQQSNDQGSIVDKKYKNFQDFVKRADKL
KLPRGWKITHHEQLTEVVKEDESLSIPAFQIFINSNTDLSINLRCYGWLL
PKESPIMKEIDSLNDIYLSDYIQVLESYHLCKG Run BLAST on NCBI transcript from alignment at sc0000050:584678..585670- Legend: exonfive_prime_UTRCDS Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=transcript|length=993bp|location=Sequence derived from alignment at sc0000050:584678..585670- (Clytia hemisphaerica)
ATTGCATAGTCTGAACTTTGTTTATATTTTCTTTCATAACTAGTGAATAT
AAAAAGTGAATCAACTGTATCTGTGAAAGAAGAATATTGTCTTTCAAAAT
GCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTTGTAGTACAT
GTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCAAAAAATGAT
CGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTACAAAAGACAG
GGTTGCTGATGCGGTTTTTAAGAACAAAGTTGAAAAAAACACAATCTTCA
TCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTGTAAGTATAGA
TGAATAAATCTACAAATATTAATGAAGTTATGATGCAACATATAATGTCT
TGGTTGGTCTAACAATATCTAAGTACGATAAATAATCCAAAAGTATGAAA
ATTCATACAAGTGCATGATCAGTTTTAGGTTTCACCTTTAATACCTAAGA
TAAATATTATAAAAGTATTTCAATTTTTCCCTCAGATCCTTCACGAAAAG
AACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAAATCTCCCTCAAAAG
TCACTACCCATAGCAGACACACCACAGCGATCAACGACATCAATACAGAA
ACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAGTATTGTTGATAAGA
AATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTGACAAATTGAAGCTC
CCTCGTGGCTGGAAAATTACCCATCATGAACAGCTGACTGAAGTCGTCAA
GGAGGATGAAAGTCTATCCATACCGGCCTTCCAAATATTCATCAACAGTA
ACACAGACTTGAGCATCAATCTACGTTGCTATGGCTGGTTGCTGCCAAAG
GAATCACCAATTATGAAAGAAATTGATTCCTTAAATGACATTTACTTGTC
CGATTATATTCAAGTTTTGGAAAGCTATCATCTTTGTAAAGGT Coding sequence (CDS) from alignment at sc0000050:584678..585670- >TCONS_00005052 ID=TCONS_00005052|Name=TCONS_00005052|organism=Clytia hemisphaerica|type=CDS|length=699bp|location=Sequence derived from alignment at sc0000050:584678..585670- (Clytia hemisphaerica)
ATGCCTGGTCGTGGAAATGGGGCCCACTGTGCAATCTTTGGTTGTAGTAC
ATGTCGAAAACACGGTCTTTCATTGTTCCGGCTCCCCACTGCAAAAAATG
ATCGATTTGCTCAATGGAGATCCGATATGATTAATTCGATTACAAAAGAC
AGGGTTGCTGATGCGGTTTTTAAGAACAAAGTTGAAAAAAACACAATCTT
CATCTGTGAAAGACATTTCAGAGAAGAAGATATGTATCATTATCCTTCAC
GAAAAGAACTCAGAGCTGAAGCTTATCCTCTACCAACCCAAAATCTCCCT
CAAAAGTCACTACCCATAGCAGACACACCACAGCGATCAACGACATCAAT
ACAGAAACGAGATCAGTACCAGCAGTCCAATGATCAGGGTAGTATTGTTG
ATAAGAAATATAAAAACTTCCAAGATTTTGTCAAAAGAGCTGACAAATTG
AAGCTCCCTCGTGGCTGGAAAATTACCCATCATGAACAGCTGACTGAAGT
CGTCAAGGAGGATGAAAGTCTATCCATACCGGCCTTCCAAATATTCATCA
ACAGTAACACAGACTTGAGCATCAATCTACGTTGCTATGGCTGGTTGCTG
CCAAAGGAATCACCAATTATGAAAGAAATTGATTCCTTAAATGACATTTA
CTTGTCCGATTATATTCAAGTTTTGGAAAGCTATCATCTTTGTAAAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005052-exon-sc0000050-1575043694:585332..585670 | TCONS_00005052-exon-sc0000050-1575043694:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1575043694:584678..585135 | TCONS_00005052-exon-sc0000050-1575043694:584678..585135 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1510915933:585332..585670 | TCONS_00005052-exon-sc0000050-1510915933:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1510915933:584678..585135 | TCONS_00005052-exon-sc0000050-1510915933:584678..585135 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1491911889:585332..585670 | TCONS_00005052-exon-sc0000050-1491911889:585332..585670 | Clytia hemisphaerica | exon |
| TCONS_00005052-exon-sc0000050-1491911889:584678..585135 | TCONS_00005052-exon-sc0000050-1491911889:584678..585135 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000050 | supercontig | sc0000050:584678..585670 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR006612 | Znf_C2CH |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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