TCONS_00005131 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005131
Unique NameTCONS_00005131
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1997

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005131 ID=TCONS_00005131|Name=TCONS_00005131|organism=Clytia hemisphaerica|type=transcript|length=1997bp
AGTAGTTATCAAGCCAAGCACTGCACGTCTTATAACATTTTACACTATTT
TAATTAAAGCTAAGAAGAATAGCATgctaatgaaaacaaaaatggcaACC
CTGAGTCGAACATCCCTAAATCTTATTGCATCGATGTTCGAACTACAATA
CGTTGCAACATATCTCGCATTATGGTATTTGTTTATACAGTTCTGTTGCT
TAGCAACATGGGTTGTCCCCTGGTATGTTTTGGTGACGTCATTGGTTATC
GGGTACCGGTACTTTTGGTGTGAGAATTTACAAATTCCAAGACAAGAGGA
TAAAGATTGTTTGGTCGTCATAATTGGGTCCGGCTTTGCAGGTATATGTG
CAGCAGTTCGTTTGAAGCTACAAGGAGTTCCTTTCATCGTTCTTGAGAAG
GCAGAGAGTTTGGGAGGGACCTGGTTGAACAATCAGTACCCTGGAAACGG
CTGTGACACCATGGTACATATGTATGTGTATTCTTTCTTCCAAAGCAACA
AATGGACCAGGATGCTTGAAGGTGGATCGTCAATCTTGGCATATCTTCAC
CAAGTCTCTGATCACTTCCAACTACTGCAACATTTAAAATTCAACACGAA
AGTCGAGCAatgtgttttcaatgaaacaacCAGCAAATGGACAGTCACCA
CATCCACTGGAGAGTCAATCCAATGCAATTTCATCATATCCGCTGTTGGT
TTCGCTCACATTCCCAATATGCCAAATATCAAAGGAATGGATAAATTTGA
AGGCGATATTTTTCATacctcaaaatggccaaaagatTATGAATGCAAGA
ACAAGCGAGTTGCTTTAGTTGGTACTGGATGTTCTGGGATACAAGTGATG
CCGTACTTAGCACGGAGATGTCAGCAATTGTGTGTCCTTCAACGTAAAGC
AGCCTACGTATTACCAAAGTTCGATCTAATATTCCCAGACGTTATCAAGC
AATTATTCAAAAACTTACCATTCTCAATGATTTTATTGCGTTGGTATATC
TTCGTTCGATTGGAGATGATTTATTTCTTAGCACTTATTCGAAATTCGCA
cacaaattttttacttcaattcATTGTGAAGAAAATAATGAGCTTCCAAG
TTGAGGATCCGAAATTGAAAGACAAACTGATACCAGATTATGTGCTAGGA
TGCAAACGTATCACCATATCAAGCGACTATATTTCATCCTTCAATCAACC
AAATGTTCAACTCATCGATACAAAAATAAGAGAAATTACAAAAGACACTA
TATTGACAGAAGATGGACATAGCGTAGCTGTGGATACCATTATACTTGCT
ACTGGCTTCAATGCGCTAAAAAGTATAGCTGGAGACATGAAAATTGTTTG
TCCAAGCGATGGTAAAACATTATCAGAGATTTGGAATGACGACCCAACAG
CTTTTTTGGGAACTTGTCGCCCTGGATTCCCCAATTTTTTCACACTACTC
GGCCCTGGAACTGAACTTGGTCATAACAGCGTGGTTTGGATGGCCGAACA
GCAGATGTACCTCATTTCAAAACTCATTTCAAGAGTACAAAAGAAGAAAC
TCAAACAAGTTGACGTCACGCAAAAAGCAtttgatgaatttcaagttGGG
TTTCAAAGAGACTTAAGAAAGAGCGTTTTTGATGAACCCTGCCAGAGCTG
GTATCAAAACGAGGATGGTTTCAGCTTCTTGACTTGGCCGAGTCATTGTC
TGAAGTTCTGGTGGAAAACAAGAACAtacaaaaatagtttttttcaattt
aagtAATTCGTTAATTTTTACAGTTTTTACCTTTTATTTCGGCAATATAA
ATTGGAAGATTTTTGTCTTATCCTCATAGAGTGTTCAATAATTTATTAAG
AACTCAACTctgaatataattattttttctaatttagtTTGGCAAAATAA
CTCCTTTGTTCATGAATTTTACACTCattttgtatataaaaaaatattgt
agTATAAAATTTCCCTAATATTATTGAATTGACAATACATCTATCAC
Run BLAST on NCBI

protein sequence of TCONS_00005131-protein

>TCONS_00005131-protein ID=TCONS_00005131-protein|Name=TCONS_00005131-protein|organism=Clytia hemisphaerica|type=polypeptide|length=584bp
VVIKPSTARLITFYTILIKAKKNSMLMKTKMATLSRTSLNLIASMFELQY
VATYLALWYLFIQFCCLATWVVPWYVLVTSLVIGYRYFWCENLQIPRQED
KDCLVVIIGSGFAGICAAVRLKLQGVPFIVLEKAESLGGTWLNNQYPGNG
CDTMVHMYVYSFFQSNKWTRMLEGGSSILAYLHQVSDHFQLLQHLKFNTK
VEQCVFNETTSKWTVTTSTGESIQCNFIISAVGFAHIPNMPNIKGMDKFE
GDIFHTSKWPKDYECKNKRVALVGTGCSGIQVMPYLARRCQQLCVLQRKA
AYVLPKFDLIFPDVIKQLFKNLPFSMILLRWYIFVRLEMIYFLALIRNSH
TNFLLQFIVKKIMSFQVEDPKLKDKLIPDYVLGCKRITISSDYISSFNQP
NVQLIDTKIREITKDTILTEDGHSVAVDTIILATGFNALKSIAGDMKIVC
PSDGKTLSEIWNDDPTAFLGTCRPGFPNFFTLLGPGTELGHNSVVWMAEQ
QMYLISKLISRVQKKKLKQVDVTQKAFDEFQVGFQRDLRKSVFDEPCQSW
YQNEDGFSFLTWPSHCLKFWWKTRTYKNSFFQFK
Run BLAST on NCBI

transcript from alignment at sc0000051:301654..304981+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005131 ID=TCONS_00005131|Name=TCONS_00005131|organism=Clytia hemisphaerica|type=transcript|length=3328bp|location=Sequence derived from alignment at sc0000051:301654..304981+ (Clytia hemisphaerica)
AGTAGTTATCAAGCCAAGCACTGCACGTCTTATAACATTTTACACTATTT
TAATTAAAGCTAAGAAGAATAGCATgctaatgaaaacaaaaatggcaACC
CTGAGTCGAACATCCCTAAATCTTATTGCATCGATGTTCGAACTACAATA
CGTTGCAACATATCTCGCATTATGGTATTTGTTTATACAGTTCTGTTGCT
TAGCAACATGGGTTGTCCCCTGGTATGTTTTGGTGACGTCATTGGTTATC
GGGTACCGGTACTTTTGGTGTGAGAATTTACAAATTCCAAGACAAGAGGA
TAAAGATTGTTTGGTCGTCATAATTGGGTCCGGCTTTGCAGGTAAATATT
TTCTACTTATTTTTTGGATTTCTAAATTATCACCTTCTCCCCGCAATGGC
ATTATTACGTTAGTAGTCAAAGTCGCAATAAGGGAGCTTACGATAGCCAA
TAATTCACTGAGATGATCTCGGAGATGATGCATAATTGCAATCTTAAATG
AAGACCTAAAACCTGACTATAATTCTTTTTGCAGGTATATGTGCAGCAGT
TCGTTTGAAGCTACAAGGAGTTCCTTTCATCGTTCTTGAGAAGGCAGAGA
GTTTGGGAGGGACCTGGTTGAACAATCAGTACCCTGGAAACGGCTGTGAC
ACCATGGTACATATGTATGTGTATTCTTTCTTCCAAAGCAACAAATGGAC
CAGGATGCTTGAAGGTAAATGATGAAAAATCCccaaaattgatatttaca
AAGATTTGCAACTTCTAGCTAACGTAATATAAAGACGTacaattttgccc
gatttctcGCTGAATTCaaacaaaagttttctttcagGATGTGACGACGT
TTTTGTTTGTAGACCATTACCAGAAAAATCCCTTGTTGCTGCTCTGGAAC
TTGTTGTCTCTCTGAGAAAGATTACAGATTTAGTAAAGAATACGNCATTA
CCAGAAAAATCACTTGTTGTTCTTGAACTTGTTGTCTCTCTGAGAAAGAT
TACTAACAGATTTAGTAAAGAATAAAGAATCCTTCGTGGAAACATTAATG
TTACTATCCAAATTTGGTAGGTTTGaccttattttttttattccacAGGT
GGATCGTCAATCTTGGCATATCTTCACCAAGTCTCTGATCACTTCCAACT
ACTGCAACATTTAAAATTCAACACGAAAGTCGAGCAatgtgttttcaatg
aaacaacCAGCAAATGGACAGTCACCACATCCACTGGAGAGTCAATCCAA
TGCAATTTCATCATATCCGCTGTTGGTTTCGCTCACATTCCCAATATGCC
AAATATCAAAGGAATGGATAAATTTGAAGGCGATATTTTTCATacctcaa
aatggccaaaagatTATGAATGCAAGAACAAGCGAGTTGCTTTAGTTGGT
ACTGGATGTTCTGGGATACAAGTGATGCCGTACTTAGCACGGAGATGTCA
GCAATTGTGTGTCCTTCAACGTAAAGCAGCCTACGTATTACCAAAGTTCG
ATCTAATATTCCCAGACGTTATCAAGCAATTATTCAAAAACTTACCATTC
TCAATGATTTTATTGCGTTGGTATATCTTCGTTCGATTGGAGATGATTTA
TTTCTTAGCACTTATTCGAAATTCGCAcacaaattttttacttcaattcA
TTGTGAAGAAAATAATGAGCTTCCAAGTTGAGGATCCGAAATTGAAAGAC
AAACTGATACCAGATTATGTGCTAGGATGCAAACGTATCACCATATCAAG
CGACTATATTTCATCCTTCAATCAACCAAATGTTCAACTCATCGATACAA
AAATAAGAGAAATTACAAAAGACACTATATTGACAGAAGATGGACATAGC
GTAGCTGTGGATACCATTATACTTGCTACTGGCTTCAATGCGCTAAAAAG
TATAGCTGGAGACATGAAAATTGTTTGTCCAAGCGATGGTAAAACATTAT
CAGAGATTTGGAATGACGACCCAACAGCTTTTTTGGGAACTTGTCGCCCT
GGATTCCCCAATTTTTTCACACTACTCGGCCCTGGAACTGAACTTGGTAA
GTCATATATAGAAAGCCTTGTCGTTGTGTTGTCTTTTGAATCCAAGTGAA
AGCAATAAAACTAAATTTACAATGGAAGTTTTTTGCTTTACATAAAATAT
ACGAGATTTCAATCAATCTTATTCAAAGATTCATCAGATTGTTCATTTTT
GTTCCGCACTTATTgcaacttctattattcgaatccttTCTTTAATTCAA
ACTTGTTTCCaatccccgtcaaggagaaaccctcttaaaatactttctat
aatttgaatctctctgtaattcggaCAAATAACATTCTCCGcttaagttc
gaattagcgattCAGTTATTTAGAACTTGCTTGTTTAAAATCCAAGAGAA
ATACTGAATGAATATACGTAATTTCATACTACAGGTCATAACAGCGTGGT
TTGGATGGCCGAACAGCAGATGTACCTCATTTCAAAACTCATTTCAAGAG
TACAAAAGAAGAAACTCAAACAAGTTGACGTAAGTGGAGATTCCAACAAG
tctatttttctttcgaaaGTTAAACGTAATGTGAGCAGATAGGTGGAAGA
TTTTGCAATGGAACGGGAAAAAAAAGCTTTATAAATTGTAATTATCAGCG
TTGccatcatttggtcaaaatcctTGGAAATCTCTCTCCTTGGAAATCAT
ATAACCCTCTGAAAGGGTtaaataatttgattttcatgATGTTGGGATCC
TGTTAGAAAGGATTGTTTTCGTAagctttttaaagaaattttgaaggtgT
GAAAATGTTTCCTAATTCATTACTTACCATTTTCATTCTCTCTCCTAAGA
TATAAATTGTCTCCCCTCAAAAAGTTTTCTCCCTTTTCTTAACAGGTCAC
GCAAAAAGCAtttgatgaatttcaagttGGGTTTCAAAGAGACTTAAGAA
AGAGCGTTTTTGATGAACCCTGCCAGAGCTGGTATCAAAACGAGGATGGT
TTCAGCTTCTTGACTTGGCCGAGTCATTGTCTGAAGTTCTGGTGGAAAAC
AAGAACAtacaaaaatagtttttttcaatttaagtAATTCGTTAATTTTT
ACAGTTTTTACCTTTTATTTCGGCAATATAAATTGGAAGATTTTTGTCTT
ATCCTCATAGAGTGTTCAATAATTTATTAAGAACTCAACTctgaatataa
ttattttttctaatttagtTTGGCAAAATAACTCCTTTGTTCATGAATTT
TACACTCattttgtatataaaaaaatattgtagTATAAAATTTCCCTAAT
ATTATTGAATTGACAATACATCTATCAC

Coding sequence (CDS) from alignment at sc0000051:301654..304981+

>TCONS_00005131 ID=TCONS_00005131|Name=TCONS_00005131|organism=Clytia hemisphaerica|type=CDS|length=1755bp|location=Sequence derived from alignment at sc0000051:301654..304981+ (Clytia hemisphaerica)
GTAGTTATCAAGCCAAGCACTGCACGTCTTATAACATTTTACACTATTTT
AATTAAAGCTAAGAAGAATAGCATgctaatgaaaacaaaaatggcaACCC
TGAGTCGAACATCCCTAAATCTTATTGCATCGATGTTCGAACTACAATAC
GTTGCAACATATCTCGCATTATGGTATTTGTTTATACAGTTCTGTTGCTT
AGCAACATGGGTTGTCCCCTGGTATGTTTTGGTGACGTCATTGGTTATCG
GGTACCGGTACTTTTGGTGTGAGAATTTACAAATTCCAAGACAAGAGGAT
AAAGATTGTTTGGTCGTCATAATTGGGTCCGGCTTTGCAGGTATATGTGC
AGCAGTTCGTTTGAAGCTACAAGGAGTTCCTTTCATCGTTCTTGAGAAGG
CAGAGAGTTTGGGAGGGACCTGGTTGAACAATCAGTACCCTGGAAACGGC
TGTGACACCATGGTACATATGTATGTGTATTCTTTCTTCCAAAGCAACAA
ATGGACCAGGATGCTTGAAGGTGGATCGTCAATCTTGGCATATCTTCACC
AAGTCTCTGATCACTTCCAACTACTGCAACATTTAAAATTCAACACGAAA
GTCGAGCAatgtgttttcaatgaaacaacCAGCAAATGGACAGTCACCAC
ATCCACTGGAGAGTCAATCCAATGCAATTTCATCATATCCGCTGTTGGTT
TCGCTCACATTCCCAATATGCCAAATATCAAAGGAATGGATAAATTTGAA
GGCGATATTTTTCATacctcaaaatggccaaaagatTATGAATGCAAGAA
CAAGCGAGTTGCTTTAGTTGGTACTGGATGTTCTGGGATACAAGTGATGC
CGTACTTAGCACGGAGATGTCAGCAATTGTGTGTCCTTCAACGTAAAGCA
GCCTACGTATTACCAAAGTTCGATCTAATATTCCCAGACGTTATCAAGCA
ATTATTCAAAAACTTACCATTCTCAATGATTTTATTGCGTTGGTATATCT
TCGTTCGATTGGAGATGATTTATTTCTTAGCACTTATTCGAAATTCGCAc
acaaattttttacttcaattcATTGTGAAGAAAATAATGAGCTTCCAAGT
TGAGGATCCGAAATTGAAAGACAAACTGATACCAGATTATGTGCTAGGAT
GCAAACGTATCACCATATCAAGCGACTATATTTCATCCTTCAATCAACCA
AATGTTCAACTCATCGATACAAAAATAAGAGAAATTACAAAAGACACTAT
ATTGACAGAAGATGGACATAGCGTAGCTGTGGATACCATTATACTTGCTA
CTGGCTTCAATGCGCTAAAAAGTATAGCTGGAGACATGAAAATTGTTTGT
CCAAGCGATGGTAAAACATTATCAGAGATTTGGAATGACGACCCAACAGC
TTTTTTGGGAACTTGTCGCCCTGGATTCCCCAATTTTTTCACACTACTCG
GCCCTGGAACTGAACTTGGTCATAACAGCGTGGTTTGGATGGCCGAACAG
CAGATGTACCTCATTTCAAAACTCATTTCAAGAGTACAAAAGAAGAAACT
CAAACAAGTTGACGTCACGCAAAAAGCAtttgatgaatttcaagttGGGT
TTCAAAGAGACTTAAGAAAGAGCGTTTTTGATGAACCCTGCCAGAGCTGG
TATCAAAACGAGGATGGTTTCAGCTTCTTGACTTGGCCGAGTCATTGTCT
GAAGTTCTGGTGGAAAACAAGAACAtacaaaaatagtttttttcaattta
agtAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002924XLOC_002924Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005131-exon-sc0000051-1491911889:301654..301994TCONS_00005131-exon-sc0000051-1491911889:301654..301994Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1510915933:301654..301994TCONS_00005131-exon-sc0000051-1510915933:301654..301994Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1575043694:301654..301994TCONS_00005131-exon-sc0000051-1575043694:301654..301994Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1491911889:302188..302367TCONS_00005131-exon-sc0000051-1491911889:302188..302367Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1510915933:302188..302367TCONS_00005131-exon-sc0000051-1510915933:302188..302367Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1575043694:302188..302367TCONS_00005131-exon-sc0000051-1575043694:302188..302367Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1491911889:302752..303699TCONS_00005131-exon-sc0000051-1491911889:302752..303699Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1510915933:302752..303699TCONS_00005131-exon-sc0000051-1510915933:302752..303699Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1575043694:302752..303699TCONS_00005131-exon-sc0000051-1575043694:302752..303699Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1491911889:304088..304182TCONS_00005131-exon-sc0000051-1491911889:304088..304182Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1510915933:304088..304182TCONS_00005131-exon-sc0000051-1510915933:304088..304182Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1575043694:304088..304182TCONS_00005131-exon-sc0000051-1575043694:304088..304182Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1491911889:304549..304981TCONS_00005131-exon-sc0000051-1491911889:304549..304981Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1510915933:304549..304981TCONS_00005131-exon-sc0000051-1510915933:304549..304981Clytia hemisphaericaexon
TCONS_00005131-exon-sc0000051-1575043694:304549..304981TCONS_00005131-exon-sc0000051-1575043694:304549..304981Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005131-proteinTCONS_00005131-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:301654..304981 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0396843	0.0580476	0.0449326	0.0219798	0.535165	0.253737	2.27041	2.50765	3.39428	6.17192	11.3581	4.14943	13.2096	15.3491	8.99108	11.6922	1.92151	5.66418	12.1072	24.3674	1.20862	1.1229	0.0682518	0.0827344	0.127822	0.0760519	0.408113	0.0580732	0.0220232	0.0224382
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000103Pyridine_nuc-diS_OxRdtase_2
IPR023753FAD/NAD-binding_dom
IPR020946Flavin_mOase-like
Vocabulary: Biological Process
TermDefinition
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0016491oxidoreductase activity
GO:0004499N,N-dimethylaniline monooxygenase activity
GO:0050661NADP binding
GO:0050660flavin adenine dinucleotide binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0055114 oxidation-reduction process
molecular_function GO:0050660 flavin adenine dinucleotide binding
molecular_function GO:0050661 NADP binding
molecular_function GO:0004499 N,N-dimethylaniline monooxygenase activity
molecular_function GO:0016491 oxidoreductase activity
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005131 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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