TCONS_00005132 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005132
Unique Name	TCONS_00005132
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1739

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000051:306410..315912+
coding sequence from alignment at sc0000051:306410..315912+

transcript sequence

>TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=transcript|length=1739bp
AAAATattgaaccaaataaaaaaaatagtcTGGCgcctactttcgttttc
atttcCAAGAAATACAATTACATTGGTCACATCACCTAGGTTAAACTTTA
GTTTCTGAAAGGATTAATCAGTATTGGCCGTCTGACCACGAATTCTACTT
TTACTCGACTTATGTAACAAAGTCACCAAAAGCTTCAGTAAAGTTCAACC
AAGATGGCGTCGACAGCAGTGCTTCGAAATTTAGTTCGCCAATCATCAAA
ACGAGTAGCCAAGAGAAATGTTCCAAACCAAGTCTTTGCAAGGACCATCA
CTCAAGTTGATCCTAAGATCCCCATGAAAGAATTTGAGAAGATGAAATTG
CCTGACGAACTGGCAGAGTATACAGGTCATGTAATGTATCCTGATGAGTT
TACCGGACAGTGGGACAAGGAACAGTTTGTTGCAGAAAAGGGAGTCACCA
ATATGACATTAAACTTTGGACCACAACATCCTGCAGCTCACGGTGTATTA
CGATTAGTTTTGGAGCTCAACGGAGAGGTTGTTGAACGGGCAGATCCTCA
CGTTGGTCTTCTCCATCGGGGAACAGAAAAACTGATTGAATATAAAACTT
ACCTACAGGCCCTTCCCTATTTCGATCGATTGGACTATGTATCAATGATG
ACAAACGAACAAGTTTATTCATTGGCtgttgaaaaattattaaatgtCCA
AATTCCTGAACGTGCTAAATGGATCAGAGtgatGTTTGGAGAGATCACAC
GTATTTTGAACCACATCATGGGAATCACGACTCACGCTTTGGATGTCGGT
GCCATGACCCCTTTCTTCTGGATGTtcgaagaaagagaaaaaTTGATGGA
ATTTTACGAGCGTGCATCAGGCGCCCGAATGCACGCTGCATATGTTCGAC
CGGGTGGTGTATCGCAgGATTTACCGCTGGGTTTAATGGATGATATTCAC
GATTTCATGACGAAATTTGGACAACGTATTGATGAAGTCGAAGAGATGTT
GACACATAACCGTATTTGGAAACAACGTCTGGTGGACATCGGAGTGGTCA
CACAAGAACAAGCCTTATCTTTCGGCATGTCAGGTGTCATGCTTCGAGGA
TCGGGCTTCAAATGGGATTTAAGGAAAGTTCAACCCTATGATGCTTACGA
TCAAGTGGACTTTGATGTCCCCATCGGAAAGAATGGTGATTGCTACGACA
GATACCTGTGTCGCATGGAAGAGATGAGACAAAGTATGAGAATCGTCTTC
CAATGTTTGAACAAGATGCCACCTGGAGAGATCAAGATCGATGATGCCAA
AGTGTCTCCTCCAAAACGTTCAGAGATGAAGGAATCTATGGAAGCCCTCA
TTCATCACTTCAAACTTTACACCGAAGGCTACACTGTACCTCCTGGTGAA
ACTTACACCGCTATCGAAGCTCCCAAGGGTGAGATGGGCGTATATTTGGT
ATCAGATGGCTCAAGCAAACCGTACCGATGCAAAATTCGTGCACCTGGTT
TCTATCATCTCGCGAGCATGGATTACATGTCACGCGGACACATGTTAGCT
GATGTCGTAGCAATTATCGgaACTCAAGATATCGTGTTCGGTGAAGTCGA
TCGTTAGACGAACGAGAGATtggaaataatatttttaacaacaattattt
tttgttaCTTTTAATTGTTCAAcgaacaaaaacaccaaaatgttTGTAAT
GCAATTTGTACATAAGAATCAAACTTATTAACTCGAGAT

Run BLAST on NCBI

protein sequence of TCONS_00005132-protein

>TCONS_00005132-protein ID=TCONS_00005132-protein|Name=TCONS_00005132-protein|organism=Clytia hemisphaerica|type=polypeptide|length=467bp
MASTAVLRNLVRQSSKRVAKRNVPNQVFARTITQVDPKIPMKEFEKMKLP
DELAEYTGHVMYPDEFTGQWDKEQFVAEKGVTNMTLNFGPQHPAAHGVLR
LVLELNGEVVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMT
NEQVYSLAVEKLLNVQIPERAKWIRVMFGEITRILNHIMGITTHALDVGA
MTPFFWMFEEREKLMEFYERASGARMHAAYVRPGGVSQDLPLGLMDDIHD
FMTKFGQRIDEVEEMLTHNRIWKQRLVDIGVVTQEQALSFGMSGVMLRGS
GFKWDLRKVQPYDAYDQVDFDVPIGKNGDCYDRYLCRMEEMRQSMRIVFQ
CLNKMPPGEIKIDDAKVSPPKRSEMKESMEALIHHFKLYTEGYTVPPGET
YTAIEAPKGEMGVYLVSDGSSKPYRCKIRAPGFYHLASMDYMSRGHMLAD
VVAIIGTQDIVFGEVDR

Run BLAST on NCBI

transcript from alignment at sc0000051:306410..315912+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=transcript|length=9503bp|location=Sequence derived from alignment at sc0000051:306410..315912+ (Clytia hemisphaerica)
AAAATattgaaccaaataaaaaaaatagtcTGGCgcctactttcgttttc
atttcCAAGAAATACAATTACATTGGTCACATCACCTAGGTTAAACTTTA
GTTTCTGAAAGGATTAATCAGTATTGGCCGTCTGACCACGAATTCTACTT
TTACTCGACTTATGTAACAAAGTCACCAAAAGCTTCAGTAAAGTTCAACC
AAGATGGCGTCGACAGCAGTGCTTCGAAATTTAGTTCGCCAATCATCAAA
ACGAGTAGCCAAGAGAAATGTTCCAAACCAAGTCTTTGCAAGgtatattc
aatttctatttgatAGTTAGAATATGTACCATCTTCAAGAactatttttt
ttgctttaggtAGACTCTAGGTGGACGAAGAGCTCTGGGTGACTGGACAT
GATGAAAATtcccctcatttttttttttttttgaaaaacagacttattca
ttttgaagaattatcTTAAATTAGCACAGTTTGCTTCAGTACAAGCTGTA
CATTTGTTGAATTACTGAACATTTTAGATGCTGTTCTCTGGCTGAAAAGT
TGCTCAACGACAACTTTTCAAACGCACAAtgcaatgggccattccagaat
ttgtctgtaacaggccagggaggaccctcccggcgcCGTTATTTTGTGCT
CTGGAGCACCGGAAGATTCAGGAGTACTTCCAGTGTTCCGGAGCACGATT
TTCGGTGATTGGCGGTATGCATCGGAACTCTCTGGAACGTTCTGGTCCGG
TGcacccagtttgcagagtatggcagAAATTGTCGAGATCTCGGGGGCAg
agatagaccttttcgcctttccatccgccatattgaattgtatgcaaaaa
ttatagTGGCTGAATTGCCgcggtgaaattcccttagaaagtatgcaaaa
catatgcaaaaagaaagtattattataaaacttacatgcataattgtcat
tatattaaagtgcaatcttgtagaagaaagattaaatttgcttcttttga
aaactagaaataatcaaatttgctcatctcttagaacaagcacttcaaNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNttttgttgttctg
taaatatttctttttggattaagaaatcccatcttttattgttctaatga
ttataatatttctttataagatgctttgttgtctttttaatctttatgTA
AACTTGCATATATTGCAtactaaatccaaccacagctttttcgttcctct
tttttgcatacaattcaagatggcggatggaaaggcgaaaaggtctacag
ctagttttcaatgattttgatATTGCTCACTTTTCAAGGGCAGGGACaga
attttgataatatctACCTATCAGGggcaaaatcattgaaaactaGCTAA
NTATTGCTCACTTTTCAAGGGCAGAGACagaattttgataatatctACCT
ATCAGGggcaaaatcattgaaaactaGCTAATTTCACAAGTTTTTCTGGC
TTTTTTGTGGTGGAAATAGATCTCAGGGGGATACTTTTGATGTTGGAAAT
TTTCCTTGGGGGCAACCATCACATACTCTGAAAACTGGCAGTGCACTTCA
GCTAACTGCGCATGCgcgtatttaaaaaaaatcagccGACTCATGGTAGT
TTCAATATTTTGACCAGCCATGCTATGGAATATAGCtaatgtgacaaatt
caatttcatatcATCCTCAAAGTATTTTATTTGACCAAAGTGTCCATAAC
GtggggacaaatattttttgtaaccatGTTTAAACGGTTTTTTAGAAACt
gataaaaatcacttgctccgGAAGCACCAGAAGAGCTCCAGAACTTTCcg
gagagaaaaatagtgtttttttagctgctccGGAAAACTGCGCTGGGAGG
GTCCTGgccggacgacacaggatttccgagggcaaaagttttcaccaaaa
tccaaaatttccaaggcaagagaagaaaatgaatgaatttccatggcaat
tgaattaaaaaagacaaaaaagagtGGAAATTTCCGACGCATTTTGTGAA
TTCCATCAGAATTTccaaccaccactggaaaaaaaattatttccaaagct
agaaaaaaaaaaaaatgaacgtcgtccgacggggggtaacaaaaattttc
tggaatggcccaatgggaaaagattttcagggtggtaNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNggggggggggggggggtaacaaaagttttctggaat
ggcccaatgggaaaagattttcagggtggtataatatcatgaatagattg
aacatactaaaatttacATACTTGTACAAGATCAACACCACAGATAGGTT
AAACAACAAACAGACAAAGCAAACAAGTTCAAAGAGAAAATTATCAAGAC
AAACGACAAGTAAAGTATCAATATGTTagtcaaaaaacacaaattttcaa
aaagttgacCCAGAACCACCAGGTTAGAAACCCAAAGGCCAAAGTGCAGT
GCAGATGGCTGTGTGGgaaagaacaaaaaagaaaactaaCACCAATACAT
GATAgaaaaaatgttgtaaaaagGCAGTTGCACTACAAAATGATTTAAAG
ATTCCCCAAATTTCATGaaagtctctggaaatctatCACAACATTTTACA
ATCATTTGTAAAACATTTCTCAACTCAGCTCAGCTCAGCTCAGCTCCCTT
ATTGAGCATGGATTTGAACAGTTCTGAAATTCTGGGCAGAACATCTTCAA
ATAGAAGAATTCACCTAACAATGCGTAGGACCTCAGAATATATAGAAATA
TATAGAAGAACTGTAAAAGATGAGGATGGTAAATTACTTATCTTTATGTA
CTAATATTATACTACTTATATATACTAATGGTGCCAGGTGGGGCTTTCAT
GTAAATCTTGGTACCATTTTCGATTCCCCCCTACTTATCCTAAAACAGTT
ATCCAATTAGAAAATAattgaggaaatgtgtgtagcattttagctgaaaa
aaagTGGGGAATGACCACTGCTGCAGATTTTACTGTATGTTTTTATTGAG
TGGAGCTACTTCTTTCAATTAAAAAGGGGCTAAACAAAGAATGAAAAGAC
cttcaatattaaaaaatagaatcataattttgaatgaaaataagaaagta
AAAAAGATGTGCTTCTCATCAAAACAATATTTggcacctaaaaattttca
catctTAATTAAGCATGATAACAtctctgacagtaaggtgttataaaaat
tgacaaattcctgttccaaatttattttttatgtcaagtATATTGTTCAA
ATTGTAACCGATTCTCTTTTGGCAGCACCAGCttacattttagaaaatat
ttcccTTGATGCCATTTCAATGTGGTGGCTGACAGCCTTGTgtgaaataa
taaaatcaatcaCATTTATATATTTCTAGGACCATCACTCAAGTTGATCC
TAAGATCCCCATGAAAGAATTTGAGAAGATGAAATTGCCTGACGAACTGG
CAGAGTATACAGGTCATGTAATGTATCCTGATGAGTTTACCGGACAGTGG
GACAAGGAACGTAAGTCATATTGTAGTTCATCCTCTTTTATGAACAGTAC
ATGTTTAGCATAATATTTGCAAGCATGTCGAGACCAAGACTTGTGATCAG
ATAAGATATAAGCATATTGGTGAACTTAGATCATTTATTTCctagtttga
aaaaaataaactggTATCAGCTatgtttttttgttataaatattATCAGA
TTGTATGTTATCAGGTGATATTTCTTCTCTTCCACCATCTGCTTCCATAG
TGCATTCTACCTATGAATCATGGCTTTAGAAGAGTCTGGATGTTGGATAC
CAACcttattaattttgttttcataGAGTTTGTTGCAGAAAAGGGAGTCA
CCAATATGACATTAAACTTTGGACCACAACATCCTGCAGCTCACGGTGTA
TTACGATTAGTTTTGGAGCTCAACGGAGAGGTTTGTACGTTTCTTTGCAG
ATGtttttgtaacgttgcaagtaTATAGAAGGCAAAAGGGTTTTTTTAGA
TGTAATTTCTTAAACTTAGATTTATGATCATtcttataatatttttaaag
aaatgttTTTGCTACTTTGCTAAAACTATATTTGTGCAGTAATCTTCTAA
GTTGaagatttttctctttttatttaCAGGTTGTTGAACGGGCAGATCCT
CACGTTGGTCTTCTCCATCGGGGAACAGAAAAACTGATTGAATATAAAAC
TTACCTACAGGTAATTCTCATAGTTTTATTGAGAGGTGGTTTAAGTATAT
CTCACATTATTTACCCCTTTTGCAGGCATTTATTTAGCCTCACCACAGTC
GGCCGTATAAAAAactctggtctggaagcttattgctTTAACTTTTcgtt
agctttttcctttgttaatatcaaaagataaaaatcgatttgctcagttt
ttgatcacgttacgaagtattcctcttgggattggttcaagatttaatca
catgatcaaaaaaggattaaaacaaactaatttctcaaacgCAAGTCTAT
GTAAGAAACAAtggggttttttatacggactatggccTCACAAGATATCT
GACTGAAAAAACCTCGCTGTACAAACAAAAGATAAGTTAAATGTTGacat
taatttaagttttaaaaaACTTCTTTATTTCGAATTATCAGGCCCTTCCC
TATTTCGATCGATTGGACTATGTATCAATGATGACAAACGAACAAGTTTA
TTCATTGGCtgttgaaaaattattaaatgtCCAAATTCCTGAACGTGCTA
AATGGATCAGAGGTCGGTATCATTATTATGATTGTCGTGGCTCACTTTTT
CACCCGTGGTTTATATTGACAACAGTTTAGTTGACAGTTTGGCAGCTAAC
ATTTACAGATTCGCCGATCAAATTCCTCGATACAAAGATTCTtcataaaa
gaatatttaacaGCTCAATTTGCTTTAATTTTCTGTCTGGTTCTCGAGTG
GTCACATCTGCTCCCTGTTCtcaattgatttttcttttccagtgatGTTT
GGAGAGATCACACGTATTTTGAACCACATCATGGGAATCACGACTCACGC
TTTGGATGTCGGTGCCATGACCCCTTTCTTCTGGATGTtcgaagaaagag
aaaaagtaaGTCTAAATTATGCCTCGAGATGATTCCATCATGCTCCAACG
ATAAGAaggaataaaaaaatgaaagcatTTATTTCGACTGGaatgtcatt
tttcaattaaaTGAATTCACTGTTTCTTGTTTTAGTTGATGGAATTTTAC
GAGCGTGCATCAGGCGCCCGAATGCACGCTGCATATGTTCGACCGGGTGG
TGTATCGCAggtaaagtttttgtttgttttgagtttttaacatagattta
taaagcgcGAAGGGCTAGATGGTGTACTttagctgaaaagtgtgccgtgg
ttaggtaggaaatcctacctaagtcgtgtgatattacaatagaatttctg
cgcttgaccaatcagaagcttcgcggggtTTTccaaaacaatagcagcaa
tattttttccgatattcactttctTTTGCTCGCAATgacttaaagcacga
catctagcccttcgggctttataaatctatggtttcGAATAATGACCTGT
TTGCTGGGAAGAGACTTAAAGTCTCGAATATATAAGCTTTGTAGTATATA
CCAACAACACTGAACCAGATGGTGTGTCGCATGTAAATGAAGGAGCCTTT
TGATATCGATAATTATTTTCAGGATTTACCGCTGGGTTTAATGGATGATA
TTCACGATTTCATGACGAAATTTGGACAACGTATTGATGAAGTCGAAGAG
GTATGGTTCTTCACCAATCAATTGTTTAAAGATTCCTATTGGGGTCTCAT
GGGAGTTGAAATATGACGCGAGAAGACCAAGATAATCTCTCAGATTCTTA
AGACAAATTCTTTATGTAAGACCTGTATTGCCTTAAGGAGTTGCCTCTCT
CAGCATGGacaaatcttctttttttttttttgctttctcggattcttttc
aagaaaagttttttttattttgctaatGATTTTGTGATTTAGATGTTGAC
ACATAACCGTATTTGGAAACAACGTCTGGTGGACATCGGAGTGGTCACAC
AAGAACAAGCCTTATCTTTCGGCATGTCGTAAGTTTGTCACACAAATCCT
CTGCGACTTTTGGTATCCGTAGTGAGGTCATTATAACACATTACCATGTT
GCAAAGAGAAACTTCACTGTATAGGTCTTAATATGACTTCCCCAAGGATA
TCGAAGATGTGTTTGGCATcaaattcattcaaattcaTTGCTCTAAATTT
TTAAGCCACTAAACCAAAAccattctttttttctaaaaaaggccTCACCT
CATATTTATTAACATTTCTGCAATGGCGAAATCTTGTGCGCATGATCATA
TTTGATAATCCTCAGCTTAAGTAGATTAGTTGAAATGAAAAAGTGAATAC
CATTTCAATGACTTTCTTTCAGAGGTGTCATGCTTCGAGGATCGGGCTTC
AAATGGGATTTAAGGAAAGTTCAACCCTATGATGCTTACGATCAAGTGGA
CTTTGATGTCCCCATCGGAAAGAATGGTGATTGCTACGACAGGTTATTTT
CCTTGAATAATCATTCTCTTGGGAATTGAGTGGGGTCAAATCGTGTGAAG
TATAATGATAACAGTCTCCCACCAGTTTTGTTTTTCGTATATTACGTCAG
CAGTTTGTGCCATTTGTAATTTTATCTAATCTCATGACAACACGCTTATT
TAGTCTGGGTCATTGCTAACCTATTCTCGACATTAATATTTTGGGTAGCT
TGTGGTTTGAAACAATGATATTTGCACGTTACGAGTATTTACCCGTATGG
TGTATTTGTTACGGGTATGAAGCGTTCACACTAacttcggaacgtttcgg
agaaGTTTCGTTCCGATGCAAATAGTGGAGCGAAAGCGTTTCGTTCTGTT
tcgctttgtaacgtcttctccTTTGATGTTTCGAACTCTGACGTTCACAC
GGTGTTTAGAGCAATACGATACCGTAAAGACTGAAAGACCAAAACCTTCT
TTTCGTGAATGGGCTAACGCCTTTAAAGACGAAGAACTGTGCACGCATTC
AATcgataaaaatctaaaataaaaattgaaatgttttgtTCGTATATATA
ACTTCAGATACCTGTGTCGCATGGAAGAGATGAGACAAAGTATGAGAATC
GTCTTCCAATGTTTGAACAAGATGCCACCTGGAGAGATCAAGATCGATGA
TGCCAAAGTGTCTCCTCCAAAACGTTCAGAGATGAAGGAATCTATGGAAG
CCCTCATTCATCACTTCAAACTTTACACCGAAGGCTACACTGTACCTCCT
GGTGAAACTTACACCGCTATCGAAGCTCCCAAGGTAGGTGGAAGGTTTCC
AATGATTTTGATTTGAGCCAATAAAAGAAGACTAGCGTATTCTTGCATAA
ACCATCTTTTATTCGCTCATACAAACTTCTCTTCACAACTTTAGGGTGAG
ATGGGCGTATATTTGGTATCAGATGGCTCAAGCAAACCGTACCGATGCAA
AATTCGTGCACCTGGTTTCTATCATCTCGTAAGTTAACATTTCATTCCCT
AATATTTTTAGCTCACAAAAAGGTGATGGAGGCAGTCCGGTTTTTTTGTG
TTAGCTTGTAATAAATCACATCCTTGAATGGTTTTAAATTAATATtaaaa
ttttcgataaattctttaaaatgatttATCCCGTTGCGATGATTACTCTC
TACTCTAATGTAAAACTCCACATTTAAGCTTTCACTTCAATATTAATTTG
TGGTTATTTTTTGCAGAGAAATCccctttttatcaaatattatgactttg
taTGTTCCAAAAGTTAATTGTTTctaattcttcttctttttcattctcCT
CACGATGACAGGCGAGCATGGATTACATGTCACGCGGACACATGTTAGCT
GATGTCGTAGCAATTATCGGTAAGTGAAAATATCCGTCGTCTTATTCTTG
CAAAGACGTTTCCTAACTTGGCCTGGAACAGCAGATTAGCCTTACAATTT
TAAGATTAGAATTTAGTCCTTCAGTGTTTCAGCCCTAGAATTTTGTTCTT
AGAGTTTCAGCCTTAGAATTTTGTCCTTAGAATTCGATTCAACAAGATGC
TCTTCCTCAAGAATTTACGTATTGACGTCCTTGAGACTATGTAGAGTTTC
GAACTACGGCGAGAGTTTATCTATCCTTCATGTGACCTCGACACACGATC
TAGAGGTTTTTATTTATATCCTAATTCGCTTCGCTCAAACGGATataact
tattttctttttgaacaaaCTAGGGAATCAAAGTATTCAATATGGATTGC
CGTGTATTTCGAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATACGATGAAAAATGGC
TGTTAAGGTACCTCTGGGAATTATATATATATCTATAAATCAATATAACT
TATATCCATATGGGACTACTGTATTGAGAAACCGTGAGATCATATAGTTA
TTAAGGTACCTTGGAGAATATATATTATTATCTGTTAGCCATAAAGCTTC
TATTCATGGGAGTAATGTTAGAGAGAATTAGCTAAAATGTTTGTAACTAT
TCCCTAGTGTATTCATAACAGAAAATACATTTAACGGTGACTGAGAAATT
GTGGTAAACtagtctttttgtttttgttttcaggaACTCAAGATATCGTG
TTCGGTGAAGTCGATCGTTAGACGAACGAGAGATtggaaataatattttt
aacaacaattattttttgttaCTTTTAATTGTTCAAcgaacaaaaacacc
aaaatgttTGTAATGCAATTTGTACATAAGAATCAAACTTATTAACTCGA
GAT

Coding sequence (CDS) from alignment at sc0000051:306410..315912+

>TCONS_00005132 ID=TCONS_00005132|Name=TCONS_00005132|organism=Clytia hemisphaerica|type=CDS|length=1404bp|location=Sequence derived from alignment at sc0000051:306410..315912+ (Clytia hemisphaerica)
ATGGCGTCGACAGCAGTGCTTCGAAATTTAGTTCGCCAATCATCAAAACG
AGTAGCCAAGAGAAATGTTCCAAACCAAGTCTTTGCAAGGACCATCACTC
AAGTTGATCCTAAGATCCCCATGAAAGAATTTGAGAAGATGAAATTGCCT
GACGAACTGGCAGAGTATACAGGTCATGTAATGTATCCTGATGAGTTTAC
CGGACAGTGGGACAAGGAACAGTTTGTTGCAGAAAAGGGAGTCACCAATA
TGACATTAAACTTTGGACCACAACATCCTGCAGCTCACGGTGTATTACGA
TTAGTTTTGGAGCTCAACGGAGAGGTTGTTGAACGGGCAGATCCTCACGT
TGGTCTTCTCCATCGGGGAACAGAAAAACTGATTGAATATAAAACTTACC
TACAGGCCCTTCCCTATTTCGATCGATTGGACTATGTATCAATGATGACA
AACGAACAAGTTTATTCATTGGCtgttgaaaaattattaaatgtCCAAAT
TCCTGAACGTGCTAAATGGATCAGAGtgatGTTTGGAGAGATCACACGTA
TTTTGAACCACATCATGGGAATCACGACTCACGCTTTGGATGTCGGTGCC
ATGACCCCTTTCTTCTGGATGTtcgaagaaagagaaaaaTTGATGGAATT
TTACGAGCGTGCATCAGGCGCCCGAATGCACGCTGCATATGTTCGACCGG
GTGGTGTATCGCAgGATTTACCGCTGGGTTTAATGGATGATATTCACGAT
TTCATGACGAAATTTGGACAACGTATTGATGAAGTCGAAGAGATGTTGAC
ACATAACCGTATTTGGAAACAACGTCTGGTGGACATCGGAGTGGTCACAC
AAGAACAAGCCTTATCTTTCGGCATGTCAGGTGTCATGCTTCGAGGATCG
GGCTTCAAATGGGATTTAAGGAAAGTTCAACCCTATGATGCTTACGATCA
AGTGGACTTTGATGTCCCCATCGGAAAGAATGGTGATTGCTACGACAGAT
ACCTGTGTCGCATGGAAGAGATGAGACAAAGTATGAGAATCGTCTTCCAA
TGTTTGAACAAGATGCCACCTGGAGAGATCAAGATCGATGATGCCAAAGT
GTCTCCTCCAAAACGTTCAGAGATGAAGGAATCTATGGAAGCCCTCATTC
ATCACTTCAAACTTTACACCGAAGGCTACACTGTACCTCCTGGTGAAACT
TACACCGCTATCGAAGCTCCCAAGGGTGAGATGGGCGTATATTTGGTATC
AGATGGCTCAAGCAAACCGTACCGATGCAAAATTCGTGCACCTGGTTTCT
ATCATCTCGCGAGCATGGATTACATGTCACGCGGACACATGTTAGCTGAT
GTCGTAGCAATTATCGgaACTCAAGATATCGTGTTCGGTGAAGTCGATCG
TTAG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002925	XLOC_002925	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005132-protein	TCONS_00005132-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000051	supercontig	sc0000051:306410..315912 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
228.588	223.61	275.832	279.208	96.8444	77.3432	128.996	137.399	139.517	129.61	125.944	134	101.397	102.387	102.952	114.652	257.487	262.061	64.4583	73.5641	194.893	204.318	137.774	137.028	192.844	181.73	108.645	88.0899	97.9548	90.8588

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR022885	NDH1_su_D/H
IPR001135	NADH_Q_OxRdtase_suD
IPR029014	NiFe_Hase-like
IPR014029	NADH_UbQ_OxRdtase_49kDa_CS

Vocabulary: **Biological Process**
Term	Definition
GO:0055114	oxidation-reduction process

Vocabulary: **Molecular Function**
Term	Definition
GO:0016651	oxidoreductase activity, acting on NAD(P)H
GO:0051287	NAD binding
GO:0048038	quinone binding

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055114	oxidation-reduction process
molecular_function	GO:0051287	NAD binding
molecular_function	GO:0016651	oxidoreductase activity, acting on NAD(P)H
molecular_function	GO:0048038	quinone binding

Blast

[Close]

BLAST of TCONS_00005132 vs. Swiss-Prot (Human)
Match: NDUS2 (NADH dehydrogenase [ubiquinone] iron-sulfur protein 2, mitochondrial OS=Homo sapiens GN=NDUFS2 PE=1 SV=2)

HSP 1 Score: 677.937 bits (1748), Expect = 0.000e+0
Identity = 321/418 (76.79%), Postives = 365/418 (87.32%), Query Frame = 3

Query:  366 EYTGHVMYPDEFTGQWDKEQF-----VAEKGVTNMTLNFGPQHPAAHGVLRLVLELNGEVVERADPHVGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMTNEQVYSLAVEKLLNVQIPERAKWIRVMFGEITRILNHIMGITTHALDVGAMTPFFWMFEEREKLMEFYERASGARMHAAYVRPGGVSQDLPLGLMDDIHDFMTKFGQRIDEVEEMLTHNRIWKQRLVDIGVVTQEQALSFGMSGVMLRGSGFKWDLRKVQPYDAYDQVDFDVPIGKNGDCYDRYLCRMEEMRQSMRIVFQCLNKMPPGEIKIDDAKVSPPKRSEMKESMEALIHHFKLYTEGYTVPPGETYTAIEAPKGEMGVYLVSDGSSKPYRCKIRAPGFYHLASMDYMSRGHMLADVVAIIGTQDIVFGEVDR 1604
            ++ G VMYP + T  W    +       +  V N+TLNFGPQHPAAHGVLRLV+EL+GE+V + DPH+GLLHRGTEKLIEYKTYLQALPYFDRLDYVSMM NEQ YSLAVEKLLN++ P RA+WIRV+FGEITR+LNHIM +TTHALD+GAMTPFFW+FEEREK+ EFYER SGARMHAAY+RPGGV QDLPLGLMDDI+ F   F  R+DE+EE+LT+NRIW+ R +DIGVVT E+AL++G SGVMLRGSG +WDLRK QPYD YDQV+FDVP+G  GDCYDRYLCR+EEMRQS+RI+ QCLNKMPPGEIK+DDAKVSPPKR+EMK SME+LIHHFKLYTEGY VPPG TYTAIEAPKGE GVYLVSDGSS+PYRCKI+APGF HLA +D MS+GHMLADVVAIIGTQDIVFGEVDR
Sbjct:   46 QFGGAVMYPSKETAHWKPPPWNDVDPPKDTIVKNITLNFGPQHPAAHGVLRLVMELSGEMVRKCDPHIGLLHRGTEKLIEYKTYLQALPYFDRLDYVSMMCNEQAYSLAVEKLLNIRPPPRAQWIRVLFGEITRLLNHIMAVTTHALDLGAMTPFFWLFEEREKMFEFYERVSGARMHAAYIRPGGVHQDLPLGLMDDIYQFSKNFSLRLDELEELLTNNRIWRNRTIDIGVVTAEEALNYGFSGVMLRGSGIQWDLRKTQPYDVYDQVEFDVPVGSRGDCYDRYLCRVEEMRQSLRIIAQCLNKMPPGEIKVDDAKVSPPKRAEMKTSMESLIHHFKLYTEGYQVPPGATYTAIEAPKGEFGVYLVSDGSSRPYRCKIKAPGFAHLAGLDKMSKGHMLADVVAIIGTQDIVFGEVDR 463

The following BLAST results are available for this feature:

BLAST of TCONS_00005132 vs. Swiss-Prot (Human)

BLAST of TCONS_00005132 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
NDUS2	0.000e+0	76.79	NADH dehydrogenase [ubiquinone] iron-sulfur protei...	[more]

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TCONS_00005132 (transcript) - C. hemisphaerica