TCONS_00005156 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005156
Unique Name	TCONS_00005156
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	3740

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000051:706316..717957+
coding sequence from alignment at sc0000051:706316..717957+

transcript sequence

>TCONS_00005156 ID=TCONS_00005156|Name=TCONS_00005156|organism=Clytia hemisphaerica|type=transcript|length=3740bp
CTGACGCATTCATAAAATGAATGAACAAATAGCCATTTGAGGGATAGACA
ATATGGTGAATATCGCTCTCCTAGGGATTAATATTGAATGACGTAATACG
ATGTCATGGTAACAATACGTTTTCTCACCTGGGTCCCTTCTCCTCTATTT
TTCGCCTCCGCGTGAGAGCAGAAGAAACGCGTAAGAAGAAGTGCAATAGA
AATAAGATTGCGAATTTCTGCTGGATCCCATAAAAATAAGATGGCGGACA
AAACCAAGGTCCCTCATAAaagtaaagtaataaaaattgggtcTTATCAT
GTTGGAAAGACAATTGGGAAAGGCATGTTCGCCGTCGTTAAGATGGCCGA
GCATCATCAAGCAAAAGCAAAGGTGGCCATCAAGATGATCGATAAAAGCC
AGCTGGACGAAGAGAACCTGGCCAAAATTCGTCGAGAGGTTCACGTCATG
AAATTGGTCAAACATTCTTCCATCATTCGTTTATATGAGGTGATGGAAAC
AGAAAGATACATCTATTTAGCGATGGAATATGcatctagtggtgaaattt
tcGAATTGCTTAAGAAAGAAGGGCGAAGGAATGAAACGCAAGCACGACAC
ATGTTCAGACAAATTATTTCTGCTATGGAATACCTCCATCAAAAGCGTAT
TGTACATCGTGATTTGAAGGCTGAAAATTTGCTGCTGGATGAGAACAACA
GAGTGAAGTTGGCAGACTTCGGTttcagtaatatttttgacGTTGGTTCC
AAATTGAAGACGTTTTGTGGAAGCCCTCCTTACGCAGCACCAGAACTTTT
TGAAGGAAAGGAATACTATGGGCCAGCTGCTGATATATGGAGTTTGGGAG
TGGTTTTATATGTGTTAGTATGCGGAGCGTTACCGTTTGATGGAGAAACG
CTACCGGATCTTAAACGACGTGTTCTAAATGGAAGATTTCGTATTCCTTA
CTTCATGTCTTCAGATTGCGAGAATTTGATACGTCACATGCTTGTTGTGG
ATGTCAACAAGAGATATACCATCAATCAGATCAAACGTGACCGATGGATC
ATCCAGGGCGAACCTTACGATTTCTTGGAAGAAGAGGAGGAGTTCAATGA
TCCCGTGTCCGAAAATTCGTCCGAAAATGAATTGATATTGGATGACGAAA
TCTTTGAGCAAACGTGTCAAATATTGAGAGATGAAGAACCTCTTAAAATT
CAAGAATCTGTGCAAAAGAGGAAATTCGATGCCATCTACGGTCTTTACCA
CATCTTACTTGATCAGAAGTTGAAAGAAGAAAGAGATTTGTCATTGCAAC
GTCTTCAGCAATTACATCAATTACATCTGGTAGACACGCCACGATCTGAC
CACGAAGATGACGTCCCCGGTGAGGAGGAAATGTCTAAATTCCTCCCCTC
TAAACCCATGAAACTGGAAATTGAAGATGGGCGCGAAGAAGAACTCTCGA
GATATTTGTCGGGCGGTGGGCGAAGGCGTGGAACCATCGCTGTTTCTCAT
TTCAAACAAAACAGTGGTGGTGGAGATATTGGTATTCCGAAAATTTCCAT
CTGCCGTTCGCCGAGTCCCACAGATGATAAGAATGAATTGCAATACAAAG
AGAAGTATTTACCTCGCCCTACTGTCTTGAAAGTTCGACCCACCTTTGAC
CGTCGTGCTTCCGATGGGTCCGCAACGTTACAGGATACCATTGCACAATT
CAATTTGCATCGAAGTTATTCCAAAGCGACCGGTAGACGAAATTTGAATC
AAGATGGAAGTCGGAATATGTTAAGTGTTCCGGAGAATGATACGGCAGGC
TCTGAGTCAGAGAACGAACATGAAGCCGAGGTCTCCAATTATTTGCATGG
TCGAGGGAGACATCAACGCCGCACGCTCCCTTGTTTTCCAACCACCCCTG
AAAACGAAGACGTGCCTTCGAAGTTTTTGCGCGCGGTCAAACCGAACCGA
GCGTCGCCCACACCATACACACCAGTAGTGAACGATCCGCGGTTGAGAGA
ATTGGTACCGGGTACTAAGAAAGAAACTTTAGGTGATCTTTTAGAACAAC
ATAAACTTTTACAAGATCAATTTAGTACTCAAAGGAGAAGTTCATCCAAT
CACATTCGGGAGAACCCATTCCGTCATTCGTACCCGTTCAACGAACCACC
TCCGCCCGAACAAGAACGTAATACGGAGTTCGCTTACCTGCGCAAGAAAC
AAGAAGCACAATTAGCCGACCTTGAAGTACAATTCGCCgttcaaaagaaa
atcttggAAACCAAAATGCGACAAGAAAGGCGGGAATTTTTACGCAGAGC
TTCTGAAGGTGCCCCTAATCTAGAAAGTCAGATTCAAGCGTTTCAAAGAA
AGCACTCTGCTGCAGTTGGTGGGACCCCTCCCATTGCTCTAAGCTCTTCA
CCTCAAAGCACCAATGATGTCTTACTGCACGACGAAATGCAGAAATTAAA
TTTAATGGCCACACCACTCATGACGTCTGAACTCCCCCCGCTGGATGCAC
GCCCTCAGTTCCTCCCTGGCTCAATGGATGTGGATGAAGAAGCAAATACT
CATTTCAATAGATTCGGTCCACTACGCCCTTTGTTTAACAATCACACCCC
AGCAGATGTCTCGCTTCTCCCAAGACCTAACCCTTCTTATGGCGCAAATT
TTGGCGGAGCGAATATCCGCCCCAGTTTCCCAGGAATGGACTCTCCGAAT
TTACATGACCCTTTCATGAGGAACGGCCCTCCACCTTCGGAAATAGAAAA
TATCGGGAATGCTCACGAATCATTGAGTCGTTCGTTGAGTTATGATATGA
CATTCGCACAAAGTATGAACAATATTAGGAAACGTTTGATTGTGGCTCTG
GAAGAAGCGAATGTGGAGTACGAAAATTCGGGTGATAattatttttccct
ttttaaaGATGGCTTACAAATGGAGGTGGAAATCAACCCTGCTGCAAACT
CCGAAACAAATATTGAACACACCCTGAAACTACGTCGCGTAGGCGGCGAA
ATTTGGAGCTATAAGAAATTAAGGGAGCAGATATTTCAAAGTTTGTGTCC
TTGATGCCCATGTGACGTGGCGGCCGGTGATTGGTTACTTTCGGTGATTT
GGTCACGTGATGCTTTGGGTGCATCATTAGAAAATAAAGTAGTTATATTA
TTATTAGCATGTTTACGAATCGGCTTTCAAATTATGATAGTAGGTGTCTT
TATTTCTCTTAGCTTTTTACTCTTGGCTTTTGAGTTTGCTTTTTTAGCAT
AGCGCAACAGATAGAGCGACACAGGATTTCTTGAAACTTTTAATTTGAGA
ATTTCGTCAGATTGGATATCAGTTTTCCTGGTTAAAAGATGTTTGGCGCT
GACTTTTAGATGActttatattcttttattttcaattaagAGGAGAATTT
CTAATTATTTAAATATTATATCATTAAGAATTGTAAGAAAAAGTTtagaa
ttagacaatttattttttatgcgCTTTTTATTTTAGATACCTTGATGAAC
TCTTTATAAGAAAGTAGGAAGATATTTTCCTGCCACCCTCCCCCCTCCTC
CCCCATCTAATCTAACCAATTTATTTGTTGACAAACATCTTGAACTTCTT
CAACAAGAGAAGGATGGAACAAACGACAAACAAACGAACGAAGGAACTTT
GTACATAGCATTTTCAATTGTATATATAAACAACAACagaatgatgataa
aacaaccCTTCATatgaataaaacaaaacaaaacaaaact

Run BLAST on NCBI

protein sequence of TCONS_00005156-protein

>TCONS_00005156-protein ID=TCONS_00005156-protein|Name=TCONS_00005156-protein|organism=Clytia hemisphaerica|type=polypeptide|length=937bp
MADKTKVPHKSKVIKIGSYHVGKTIGKGMFAVVKMAEHHQAKAKVAIKMI
DKSQLDEENLAKIRREVHVMKLVKHSSIIRLYEVMETERYIYLAMEYASS
GEIFELLKKEGRRNETQARHMFRQIISAMEYLHQKRIVHRDLKAENLLLD
ENNRVKLADFGFSNIFDVGSKLKTFCGSPPYAAPELFEGKEYYGPAADIW
SLGVVLYVLVCGALPFDGETLPDLKRRVLNGRFRIPYFMSSDCENLIRHM
LVVDVNKRYTINQIKRDRWIIQGEPYDFLEEEEEFNDPVSENSSENELIL
DDEIFEQTCQILRDEEPLKIQESVQKRKFDAIYGLYHILLDQKLKEERDL
SLQRLQQLHQLHLVDTPRSDHEDDVPGEEEMSKFLPSKPMKLEIEDGREE
ELSRYLSGGGRRRGTIAVSHFKQNSGGGDIGIPKISICRSPSPTDDKNEL
QYKEKYLPRPTVLKVRPTFDRRASDGSATLQDTIAQFNLHRSYSKATGRR
NLNQDGSRNMLSVPENDTAGSESENEHEAEVSNYLHGRGRHQRRTLPCFP
TTPENEDVPSKFLRAVKPNRASPTPYTPVVNDPRLRELVPGTKKETLGDL
LEQHKLLQDQFSTQRRSSSNHIRENPFRHSYPFNEPPPPEQERNTEFAYL
RKKQEAQLADLEVQFAVQKKILETKMRQERREFLRRASEGAPNLESQIQA
FQRKHSAAVGGTPPIALSSSPQSTNDVLLHDEMQKLNLMATPLMTSELPP
LDARPQFLPGSMDVDEEANTHFNRFGPLRPLFNNHTPADVSLLPRPNPSY
GANFGGANIRPSFPGMDSPNLHDPFMRNGPPPSEIENIGNAHESLSRSLS
YDMTFAQSMNNIRKRLIVALEEANVEYENSGDNYFSLFKDGLQMEVEINP
AANSETNIEHTLKLRRVGGEIWSYKKLREQIFQSLCP

Run BLAST on NCBI

transcript from alignment at sc0000051:706316..717957+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005156 ID=TCONS_00005156|Name=TCONS_00005156|organism=Clytia hemisphaerica|type=transcript|length=11642bp|location=Sequence derived from alignment at sc0000051:706316..717957+ (Clytia hemisphaerica)
CTGACGCATTCATAAAATGAATGAACAAATAGCCATTTGAGGGATAGACA
ATATGGTGAATATCGCTCTCCTAGGGATTAATATTGAATGACGTAATACG
ATGTCATGGTAACAATACGTTTTCTCACCTGGGTCCCTTCTCCTCTATTT
TTCGCCTCCGCGTGAGAGCAGAAGAAACGCGTAAGAAGAAGTGCAATAGA
AATAAGATTGCGAATTTCTGCTGGATCCCATAAAAATAAGATGGCGGACA
AAACCAAGGTCCCTCATAAaagtaaagtaataaaaattgggtcTTATCAT
GTTGGAAAGACAATTGGGAAAGGCATGTTCGCCGTCGTTAAGATGGCCGA
GCATCATCAAGCAAAAGCAAAGGTATAATTTTTTCCAGACTTTTTTGTCT
GATAAAAATCAGTGGAAAATTTGACGACCCGTACCAAATCTGCAAATCTG
TAGCTACCAGAACCAGACGCACCTAGATGCACCACCAGCCTGATTCATTC
ACGTCAGGTTGAGTGGTTTAGATTGACCAGTGGTAATGAGTTTTCTCATT
TGACACTGGAAATTTCCTGTCTGGTGCTTCCTTAAGTCTGGTGCAAGTAA
GTAGGAAGGGCAGGCAGGGTCGTAAAAATTGCAGCTGtaatattttgttg
aaaaatattcaaagcCTGCTAAAAAAGATAAACCATGGAGGCAAGCTttg
aaatgaatgtttgatTACCCACTTAATCAACTCAATCAAACTTTTAATCG
GACGATAGGTGTTTGTTTATACGGAACGAAATCGAACGGTAATATCGAAC
CAAGAAATTTCTGTAAAATTGGATGACTGTTCGGTTGATCTTTTAAAGTT
TAATAGCAATTCAATTATAGTTTGATAGGTTCGATCGTAGCTAGACATTC
ATTCAATAAGCTTCTCGCTCTTTTCTAGGCCCTTTTTGCAATATCTTTGC
TAGTACGAAGCTCGACATGGCccgcccgagaattctcgggcctctacggg
ccatgttcgggccgagagaccctatcaattcttttggcccgaacatgacc
cgagtcattcaggccatgttcgggccatgttaaatgttaaattgattcag
catgtccagtcaaacaaaatagtacaaaataagatttgtctgttttgttt
atatcgctcaaaaaaactttacgagcttcccgtggacacacTTCAGTTTA
AAActaggaccagtttactagcaaatatttccaccctaggTATATCTATA
ACTATGTTTtaataccaaataagacatttaatatttatatgaatttacaa
cattcatatatttaatataattaagagaaaccaagtttttctcaaagaaa
atgttaaaaaaattcagtcctgaaattacacgcctgtttaaatcatgttt
tcaaaaatggccagctcgggccatactcgggctttacgcgaatttcaata
aaagttttggcccgagaattctcaggCCATGTGGAGGGTCGTTTGCTAGT
ATATCtgagaaaaatagcaaaatgatTCCGGAAAAGCACCAAGATACTAC
TCTTGAACACTCATCCACCAACTCGAGCATACATCAAACAACAAGGAACT
GTATTTTTAATGGAACTTATTTTAAACTAATCAATATATTTTCCtttaaa
gttcgattactgttcgatttggtttggtAGTCTAACACTTATCGTTTGAT
TAAGTTCAATCGAGTTCAATGGTTTGATTAAGAAAATtggttcgataggg
ttcggtcGACATCCCCTGATCAATGAAGTGCTTTTTAGACTCAATTTAAC
AAACAAGGTCCTTTTTGAAGCAATCTTTCAGCAAGAAAAATAAGAAGTCT
TACACACAGTTAGTCATACTAGCATTCTGCTGAAATGCGTATTAATTGTG
AGTTAGTCACACTAAAGTTTCGACGAAATACATATCAAAGATTGACTCAC
AAGCAAAAGAATGCACTGCAAAACTTCTTGAgagatttatgaaaaaataa
acagaCACTAAATAAACATTTCCTTTCCAAAAAGCTAAGAGAAATTACCT
AGCAGATTACCTAAATATTGAGTCATAGATTACAAAATTTGACCCATGTC
AACCTGGAAAactaccataagttggtctaatgttgacattcCTCCTATAA
TTTCAACATCCTTTTTTAGAGATGGGGGAATAGCTAATaagaaggtcaga
atcactgatggaCTCCTCAATTATTGATTGCTGACCAAAGAAAATaagtt
tcaatcagcgattctgaccttctatttattcatatctctaaagaaagtga
tgaaattagaagagggatgtcaacattagaccaataCGGTAATTTgaaga
acaaagaaaaagatcaacAGTGGAGAAGAAACCAAACTAGATCTGCGCAC
TACATTTGTAAATGGAGTAAAAAACAAAAGTGTTAATAAGGAAAAagtat
tgcaataaaaaaagattaagGTTAAAAAACCTGGCTCTCGGAAGGAAAAA
GATTTCATCCCTTTTCGAGATtcccaaaaaagattttcaaaaaagattcc
CCAGCAGAAAGGGAGAGGAACAGGGAGGAAACTATAAAATCGTTAATAAT
ACCACCAAGCTTCCTTATACAGACAATAAATCTTCTGTCCTAACCCCAGA
CAATGATCCGTGTAACTTTTCCCATTTTAGGTATCTTGCAAAGTACCCTT
GCCctgtttttatattttagttGTAGATTAcattatatttttgttaataa
aaTTTCCCATCGTAGTTTTCTTCTTAAATATAAACTTGGACCTCATAACC
CAGATATTCATCTCACTGGTAATAAAGATTTGCTGATGATGTAATTCTtg
ctacagtatgtggcccccaaaacgtcgatcaaatttgaaacttctctcaa
atctagaggaaaagaagttttacaaaaatttttgctgcatgaaaaacttc
atcgctactttatttcccggaagttctttttcaaaattttcaatttcaac
aatatttttcaatcgcttaaagataggtagcttttttctaagggccccca
aaacggcaggtttgcaattttagcgatttctcgagatatcttcaagatat
gaatacaaaattttgaccatagtttggaaatggaatttagagggttttgg
gcataaatttgtttgataaaatttttacagtatgcCCCTGGTTGTTAAAA
CGCAGGTTTGGGCCCCCAAAACgcaggtgtagttaaaatcaaattattaa
gcccagtggtaaaagggggagaaactatgaacatatttgttttcatgttt
tccattatatttacgacccgatgcatgtaaaatttaagatttttataaaa
tatttcaagattttcgatgatgcaaagtccaaactgaaaatttagaaatt
ttcaaaatgacaattttgatttaacaacgtattaatcaagtttttgaaaa
caaatttcttttgaatatagtttcattcatgtatggaatttGCTGTGAAA
ATcttagaaaaacagcttaactgaagctgaaaatattaaaagctaaaagg
tatttttctcctacattttgcaaaaaatgacaaaatttgccgtttttgct
gattccgCGAACATttttataccttaagggaagaaattttcgcgagaaga
aattttcgcggaatttaatttcgcgaatcagagtttcaaaatggcaaatt
tcgcggaatttaatttcgcaaatgagccgatttcaaaagtttcacggaat
ttaatttcgcgattgagaagaagttatcaacttagattaacttttaagca
tcacggagttgcttatatttgtttatatttgataaaagatacacgttata
atgtgttataaatcaattgtgtccatcttttttggtaacatctggtcaaa
aacaacaaaataaaagaagaagaaaaaaaatccaatttcgcggaatttaa
tttcacaatttaacaattttggtgtgtttcgcggaatttaatttcgcgaa
ttgcgccccaattcgcgaaattaaattccgcgaaaatttcttccgcaaaa
atttcttctcgcgaaaatttcttcccttaaggtatgtaatattaattttt
tgctataaactattatttcaagctgataggaatggaattccaagattttt
tgctgtttctcatatttagaattttccgttttatcaatgctgattgtAGT
GCcgcaaaatactggttgacctttaagatgctatatcttttacccatcgt
ctaaagtcacagatgtatctgaattttctgaacggcattaggtgtagaaa
gtttcctataccccattttcataacttattttcaatatccaagtagctag
agtgagttatatgcaatttttatctaattttggtgttaaaatatttcctt
cagacgcaagtatgttattttgaatctgtctggaaccatcaaaaacatgt
tcatttttaagtataaccatcattctttcaaaataaacaaaaatcgttta
attcttaTAAATCTACAAGTGAGAATCCTCGTTTTAATGatgacctccgt
tttgggggctgTCTCTGTTTTGGGGGCTATATACTGTAGTCAGTTCTAGT
TTTTGCAGACACAAAAACTTATATTACACTTAAATCAGCTACAGATTGCT
AAGGGTTATATCTCAACGTTTCCCAAAACTaaatttttcagtattttccA
GTGAGTATTTTTTCCAGAAGTCTCAAAACTGTTTCGCTTCGGGTATCAAA
TTAAAGAAGGTTGAGGTTGACAATTacaaataccttaaaggaagaaattt
ttgcggaaagaaaatttggcggaaagaaaatttggcggatttggcagaTT
TAGCCAAAATCCACCGAATTaaagttcctgccaaaatttattttttcctc
catccgccaagttaaattcccaccaaatttaTCTTATTTTACGCATTCCC
CAAATTGGTgcaatttcaggccttaaagcaggtttttttgcttatttgat
aacgattttggccaaaaatatctttcaaccgccaaatcaaattcccttca
aatttgatttttccagccatccgccaaattaaattccctctgaaaaattt
ttttcggccatccgccaaattaaattctcgctaaaatttcttccgtTAAG
GTACCCAAAGACACCTACATTCCATCatctaaaaaaagattttaagattg
caaagcatcttctttttcaatttttttaatttctaattttcactttcatt
ttcatgcttttttgtaattttatgaACCCAAATTGATAATTTaaataacc
ttttttgcctCTAACAAGTCAATGTAAAAGCcctattattatatacctgt
aggcaaaaacagccattgaataattcctgatataccatggctattatacc
acggtagaactttcttttcaaattttgcattcaaagtttgatttttttgt
cgctcttgttgttatcaaagaaattcattaaaaaatctaTTGTGAATTTC
ATGAACaattttatgactcaaagtaattaagaaaatctttaaaaaagaaa
aacattcgaacgttcgattatgggagtgttttatgtGAAACGTTCGACTA
TTgacacaaaaattaatgttttgtttttgcctctaggtatgtaataaaac
atatattcaataggttttcgttggttatggatttattaaccctcggtaat
gaatattcaactcggctgcgcctcgttgaatattacatcacctcgggtta
ataaatctcaataaccaacttttacccattgaatatctgcttattattcC
ACTGTTTTTCCTGttatgatttttatttattcacCAACATTTAGGAGTTT
TTTCATGCACCTGCAATAAGATTTTCAAGTTAAAATCCAGGAACACGTCA
TCTAGATCAACATTCACTgggtttagtttagtttttagttttagtttcaT
CTCTAGCCCCTATGGGGTTTTAAAGTCAATGGTAGCATTAGATTCTGCTC
TCTTGTCAGAGTAAACCAAAGGGAAAATCAGCTCAGGAAAGTCCAGGAAA
CGCTGGATGAGAACAGAACAATTACAATTGCCTTACCTTGAATTACAATT
GTGAAATAAATCCTGATGTAATAGCTGATAAACTTTTCAAATACCAATTT
CcacttaaaatctcaaaattaggtCAGCTTTACGGTCCATGGGTTTATAT
CCATGATCCTGGCCCCTCATCTTGAATCAATATATAATTCAAGATAGCTA
GGGAGGGTATTTTTTGCCAGCTAAAATGTCAATTAAAGATCATCAATTTA
CTTACTGccatggcatggaccaggggtttaggtaccccctaagaaaatag
gtaccccctgaattttaggtacccccaaacaacagacgttattaggtacc
ccctgtgattggtaccccctgtgacttgagtatatgtcaagaaattgtat
atttttacaattaaaaagaataatgatagttagataaaagcaagataaaa
tatagttcccaaTCCCCCAGATCTTACTgcataaaagttagataccccag
agatcataggtaccccctgaaattaaaaaaaaacagtccCTAGCcttttc
aggaagattttggttgtagtcccccctgcgggctggggggggggttcatg
ccaTGTTACTCTTTTGTTCATTCAATATTCTAGATATtcaattttgcatt
tttaactttaacattttttaatgttcTGGAGGAGGTTTTCTGGCCATTCT
GTAAAATGCACTTCATTTCTCatcttcgttttcaaaatttcaaaatattt
catagGCTTTTTAAAATTAACCCATTTTCAAGTGCCACTGGTATCATATG
AAATTCCAGTTGTGTAATGGTTGATCGTGACTATtatctaaaaaatgatt
tttatttgtttgCAGGTGGCCATCAAGATGATCGATAAAAGCCAGCTGGA
CGAAGAGAACCTGGCCAAAATTCGTCGAGAGGTTCACGTCATGAAATTGG
TCAAACATTCTTCCATCATTCGTTTATATGAGGTAACCTCATCATTATTT
TCGAAATGTAGGCCATGATGTTTTTAAACAAATACCTTGGACCATACCAA
AGGTTtcattttacaactttttaagTCAGCAGTGAGGTTTCCGATGTCTG
TCAtccacaaaaaagtttgcttccctttaaagaagtttttattatcaatt
tgTATTTTAGGTGATGGAAACAGAAAGATACATCTATTTAGCGATGGAAT
ATGcatctagtggtgaaattttcGAATTGCTTAAGAAAGAAGGGCGAAGG
AATGAAACGCAAGCACGACACATGTTCAGACAAATTATTTCTGCTATGGA
ATACCTCCATCAAAAGCGTATTGTACATCGTGATTTGAAGGTAAGCAATT
CTCATTAATGACCCTAACAGTTTCTTGGTCTGAAGATGGAAATTGGTCCT
GTCTGGTCCAGTTTGAATTGGGAATTAGCTTCTTCGTCTCCATAAAATAT
ATAACCAAGGATTATTAGCAAAATAGAAAAttgttgtataattttaaata
cttttttatcatAACATTGATTAGTAGAAGTATTTATTCATGGatcttgt
tttttttccacAGGCTGAAAATTTGCTGCTAGATGAGAATAACAGAGTGA
AGTTANGTTTTTTTTCCACAGGCTGAAAATTTGCTGCTGGATGAGAACAA
CAGAGTGAAGTTGGCAGACTTCGGTttcagtaatatttttgacGTTGGTT
CCAAATTGAAGACGTTTTGTGGAAGCCCTCCTTACGCAGCACCAGAACTT
TTTGAAGGAAAGGAATACTATGGGCCAGCTGCTGATATATGGGTAAGTTA
AAGGTTTTTATAAACACTACCTCTCTTTCTTATAGTTTTGTACTGATCTT
TGCTGTAAACATTgctccccagggggggggggtacttagccaaaaatggg
tgctgggtgtATGtgtggacggtaagggtcggcttttcacctttcaaagt
ctctctaagggtcgcaaaaatcgGAGAGTTTagaattagtctctctaagg
ttaggacttttttcaaaaatggtagaaaattttttttaaaagtctcTAAG
GGTCAACCTTTCAgctaaaatcagtctctctaagggttggttttcggggg
gtcccgtccgcacatacccctcatccgccaaccctagtacttCCCCCGGA
TATTGCCTCAATATAATTGTGAAAAAGCTGataagaaagtttttttatta
ttcttaACGAACATCCATTTATTGTTTACCTTTTTGTTTGTAGAGTTTGG
GAGTGGTTTTATATGTGTTAGTATGCGGAGCGTTACCGTTTGATGGAGAA
ACGCTACCGGATCTTAAACGACGTGTTCTAAATGGAAGATTTCGTATTCC
TTACTTCATGTCTTCAGGTAAGCCAACTAGGGAGCCCATTTGCGCTTGAA
CGTACATAAAGTCACCTTTTAGTCATTTTATGGCTGGTATAATTCTCTGC
ACTCTTGATTAAGAAAGTCAGTGCCCTATCCCCCTCAAATGATATGATGC
CACGAGGCGGGGAAGCTGCGTGTGTTCAGGTTCAACCGGTTTTGGATGTA
TATTTCATGCTAATGTATTTACCTGAAAGCTGTGCACTGTAATGCGCTTT
TTTTTCTACAGATTGCGAGAATTTGATACGTCACATGCTTGTTGTGGATG
TCAACAAGAGATATACCATCAATCAGATCAAACGTGACCGATGGATCATC
CAGGGCGAACCTTACGATTTCTTGGAAGAAGAGGAGGAGTTCAATGATCC
CGTGTCCGAAAATTCGTCCGAAAATGAATTGATATTGGATGACGAAATCT
TTGAGCAAACGTGTCAAATATTGAGAGATGAAGAACCTCTTAAAATTCAA
GAAGTGAGTTTGTTTCTCTCATAATCATCTATTGCATTTATGAAGATCTT
GAAAATTAAATACATTAAACATTGCATGTTGAAAAGTTTGATAAGGGACA
TTTGGACATACATTCATATCCTCTTTTAAAATATGCATTCTCATTGGTTA
ACTTTCTTAactttgccaaatattttgtctagTTTTTGTTTCCCTCTCTG
TTTTTCAGTCTGTGCAAAAGAGGAAATTCGATGCCATCTACGGTCTTTAC
CACATCTTACTTGATCAGAAGTTGAAAGAAGAAAGAGATTTGTCATTGCA
ACGTCTTCAGCAATTACATCAATTACATCTGGTAGACACGCCACGATCTG
ACCACGAAGATGACGTCCCCGGTGAGGAGGAAATGTCTAAATTCCTCCCC
TCTAAACCCATGAAACTGGAAATTGAAGATGGGCGCGAAGAAGAACTCTC
GAGATATTTGTCGGGCGGTGGGCGAAGGCGTGGAACCATCGCTGTTTCTC
ATTTCAAACAAAACAGTGGTGGTGGAGATATTGGTATTCCGAAAATTTCC
ATCTGCCGTTCGCCGAGTCCCACAGATGATAAGAATGAATTGCAATACAA
AGAGAAGTATTTACCTCGCCCTACTGTCTTGAAAGTTCGACCCACCTTTG
ACCGTCGTGCTTCCGATGGGTCCGCAACGTTACAGGATACCATTGCACAA
TTCAATTTGCATCGAAGTTATTCCAAAGCGACCGGTAGACGAAATTTGAA
TCAAGATGGAAGTCGGAATATGTTAAGTGTTCCGGAGAATGATACGGCAG
GCTCTGAGTCAGAGAACGAACATGAAGCCGAGGTCTCCAATTATTTGCAT
GGTCGAGGGAGACATCAACGCCGCACGCTCCCTTGTTTTCCAACCACCCC
TGAAAACGAAGACGTGCCTTCGAAGTTTTTGCGCGCGGTCAAACCGAACC
GAGCGTCGCCCACACCATACACACCAGTAGTGAACGATCCGCGGTTGAGA
GAATTGGTACCGGGTACTAAGAAAGAAACTTTAGGTGATCTTTTAGAACA
ACATAAACTTTTACAAGATCAATTTAGTACTCAAAGGAGAAGTTCATCCA
ATCACATTCGGGAGAACCCATTCCGTCATTCGTACCCGTTCAACGAACCA
CCTCCGCCCGAACAAGAACGTAATACGGAGTTCGCTTACCTGCGCAAGAA
ACAAGAAGCACAATTAGCCGACCTTGAAGTACAATTCGCCgttcaaaaga
aaatcttggAAACCAAAATGCGACAAGAAAGGCGGGAATTTTTACGCAGA
GCTTCTGAAGGTGCCCCTAATCTAGAAAGTCAGATTCAAGCGTTTCAAAG
AAAGCACTCTGCTGCAGTTGGTGGGACCCCTCCCATTGCTCTAAGCTCTT
CACCTCAAAGCACCAATGATGTCTTACTGCACGACGAAATGCAGAAATTA
AATTTAATGGCCACACCACTCATGACGTCTGAACTCCCCCCGCTGGATGC
ACGCCCTCAGTTCCTCCCTGGCTCAATGGATGTGGATGAAGAAGCAAATA
CTCATTTCAATAGATTCGGTCCACTACGCCCTTTGTTTAACAATCACACC
CCAGCAGATGTCTCGCTTCTCCCAAGACCTAACCCTTCTTATGGCGCAAA
TTTTGGCGGAGCGAATATCCGCCCCAGTTTCCCAGGAATGGACTCTCCGA
ATTTACATGACCCTTTCATGAGGAACGGCCCTCCACCTTCGGAAATAGAA
AATATCGGGAATGCTCACGAATCATTGAGTCGTTCGTTGAGTTATGATAT
GACATTCGCACAAAGTATGAACAATATTAGGAAACGTTTGATTGTGGCTC
TGGAAGAAGCGAATGTGGAGTACGAAAATTCGGGTGATAattatttttcc
ctttttaaaGATGGCTTACAAATGGAGGTGGAAATCAACCCTGCTGCAAA
CTCCGAAACAAATATTGAACACACCCTGAAACTACGTCGCGTAGGCGGCG
AAATTTGGAGCTATAAGAAATTAAGGGAGCAGATATTTCAAAGTTTGTGT
CCTTGATGCCCATGTGACGTGGCGGCCGGTGATTGGTTACTTTCGGTGAT
TTGGTCACGTGATGCTTTGGGTGCATCATTAGAAAATAAAGTAGTTATAT
TATTATTAGCATGTTTACGAATCGGCTTTCAAATTATGATAGTAGGTGTC
TTTATTTCTCTTAGCTTTTTACTCTTGGCTTTTGAGTTTGCTTTTTTAGC
ATAGCGCAACAGATAGAGCGACACAGGATTTCTTGAAACTTTTAATTTGA
GAATTTCGTCAGATTGGATATCAGTTTTCCTGGTTAAAAGATGTTTGGCG
CTGACTTTTAGATGActttatattcttttattttcaattaagAGGAGAAT
TTCTAATTATTTAAATATTATATCATTAAGAATTGTAAGAAAAAGTTtag
aattagacaatttattttttatgcgCTTTTTATTTTAGATACCTTGATGA
ACTCTTTATAAGAAAGTAGGAAGATATTTTCCTGCCACCCTCCCCCCTCC
TCCCCCATCTAATCTAACCAATTTATTTGTTGACAAACATCTTGAACTTC
TTCAACAAGAGAAGGATGGAACAAACGACAAACAAACGAACGAAGGAACT
TTGTACATAGCATTTTCAATTGTATATATAAACAACAACagaatgatgat
aaaacaaccCTTCATatgaataaaacaaaacaaaacaaaact

Coding sequence (CDS) from alignment at sc0000051:706316..717957+

>TCONS_00005156 ID=TCONS_00005156|Name=TCONS_00005156|organism=Clytia hemisphaerica|type=CDS|length=2814bp|location=Sequence derived from alignment at sc0000051:706316..717957+ (Clytia hemisphaerica)
ATGGCGGACAAAACCAAGGTCCCTCATAAaagtaaagtaataaaaattgg
gtcTTATCATGTTGGAAAGACAATTGGGAAAGGCATGTTCGCCGTCGTTA
AGATGGCCGAGCATCATCAAGCAAAAGCAAAGGTGGCCATCAAGATGATC
GATAAAAGCCAGCTGGACGAAGAGAACCTGGCCAAAATTCGTCGAGAGGT
TCACGTCATGAAATTGGTCAAACATTCTTCCATCATTCGTTTATATGAGG
TGATGGAAACAGAAAGATACATCTATTTAGCGATGGAATATGcatctagt
ggtgaaattttcGAATTGCTTAAGAAAGAAGGGCGAAGGAATGAAACGCA
AGCACGACACATGTTCAGACAAATTATTTCTGCTATGGAATACCTCCATC
AAAAGCGTATTGTACATCGTGATTTGAAGGCTGAAAATTTGCTGCTGGAT
GAGAACAACAGAGTGAAGTTGGCAGACTTCGGTttcagtaatatttttga
cGTTGGTTCCAAATTGAAGACGTTTTGTGGAAGCCCTCCTTACGCAGCAC
CAGAACTTTTTGAAGGAAAGGAATACTATGGGCCAGCTGCTGATATATGG
AGTTTGGGAGTGGTTTTATATGTGTTAGTATGCGGAGCGTTACCGTTTGA
TGGAGAAACGCTACCGGATCTTAAACGACGTGTTCTAAATGGAAGATTTC
GTATTCCTTACTTCATGTCTTCAGATTGCGAGAATTTGATACGTCACATG
CTTGTTGTGGATGTCAACAAGAGATATACCATCAATCAGATCAAACGTGA
CCGATGGATCATCCAGGGCGAACCTTACGATTTCTTGGAAGAAGAGGAGG
AGTTCAATGATCCCGTGTCCGAAAATTCGTCCGAAAATGAATTGATATTG
GATGACGAAATCTTTGAGCAAACGTGTCAAATATTGAGAGATGAAGAACC
TCTTAAAATTCAAGAATCTGTGCAAAAGAGGAAATTCGATGCCATCTACG
GTCTTTACCACATCTTACTTGATCAGAAGTTGAAAGAAGAAAGAGATTTG
TCATTGCAACGTCTTCAGCAATTACATCAATTACATCTGGTAGACACGCC
ACGATCTGACCACGAAGATGACGTCCCCGGTGAGGAGGAAATGTCTAAAT
TCCTCCCCTCTAAACCCATGAAACTGGAAATTGAAGATGGGCGCGAAGAA
GAACTCTCGAGATATTTGTCGGGCGGTGGGCGAAGGCGTGGAACCATCGC
TGTTTCTCATTTCAAACAAAACAGTGGTGGTGGAGATATTGGTATTCCGA
AAATTTCCATCTGCCGTTCGCCGAGTCCCACAGATGATAAGAATGAATTG
CAATACAAAGAGAAGTATTTACCTCGCCCTACTGTCTTGAAAGTTCGACC
CACCTTTGACCGTCGTGCTTCCGATGGGTCCGCAACGTTACAGGATACCA
TTGCACAATTCAATTTGCATCGAAGTTATTCCAAAGCGACCGGTAGACGA
AATTTGAATCAAGATGGAAGTCGGAATATGTTAAGTGTTCCGGAGAATGA
TACGGCAGGCTCTGAGTCAGAGAACGAACATGAAGCCGAGGTCTCCAATT
ATTTGCATGGTCGAGGGAGACATCAACGCCGCACGCTCCCTTGTTTTCCA
ACCACCCCTGAAAACGAAGACGTGCCTTCGAAGTTTTTGCGCGCGGTCAA
ACCGAACCGAGCGTCGCCCACACCATACACACCAGTAGTGAACGATCCGC
GGTTGAGAGAATTGGTACCGGGTACTAAGAAAGAAACTTTAGGTGATCTT
TTAGAACAACATAAACTTTTACAAGATCAATTTAGTACTCAAAGGAGAAG
TTCATCCAATCACATTCGGGAGAACCCATTCCGTCATTCGTACCCGTTCA
ACGAACCACCTCCGCCCGAACAAGAACGTAATACGGAGTTCGCTTACCTG
CGCAAGAAACAAGAAGCACAATTAGCCGACCTTGAAGTACAATTCGCCgt
tcaaaagaaaatcttggAAACCAAAATGCGACAAGAAAGGCGGGAATTTT
TACGCAGAGCTTCTGAAGGTGCCCCTAATCTAGAAAGTCAGATTCAAGCG
TTTCAAAGAAAGCACTCTGCTGCAGTTGGTGGGACCCCTCCCATTGCTCT
AAGCTCTTCACCTCAAAGCACCAATGATGTCTTACTGCACGACGAAATGC
AGAAATTAAATTTAATGGCCACACCACTCATGACGTCTGAACTCCCCCCG
CTGGATGCACGCCCTCAGTTCCTCCCTGGCTCAATGGATGTGGATGAAGA
AGCAAATACTCATTTCAATAGATTCGGTCCACTACGCCCTTTGTTTAACA
ATCACACCCCAGCAGATGTCTCGCTTCTCCCAAGACCTAACCCTTCTTAT
GGCGCAAATTTTGGCGGAGCGAATATCCGCCCCAGTTTCCCAGGAATGGA
CTCTCCGAATTTACATGACCCTTTCATGAGGAACGGCCCTCCACCTTCGG
AAATAGAAAATATCGGGAATGCTCACGAATCATTGAGTCGTTCGTTGAGT
TATGATATGACATTCGCACAAAGTATGAACAATATTAGGAAACGTTTGAT
TGTGGCTCTGGAAGAAGCGAATGTGGAGTACGAAAATTCGGGTGATAatt
atttttccctttttaaaGATGGCTTACAAATGGAGGTGGAAATCAACCCT
GCTGCAAACTCCGAAACAAATATTGAACACACCCTGAAACTACGTCGCGT
AGGCGGCGAAATTTGGAGCTATAAGAAATTAAGGGAGCAGATATTTCAAA
GTTTGTGTCCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_002940	XLOC_002940	Clytia hemisphaerica	gene

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005156-protein	TCONS_00005156-protein	Clytia hemisphaerica	polypeptide

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000051	supercontig	sc0000051:706316..717957 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
24.3049	20.9053	6.73839	4.97508	34.4937	26.5304	26.0355	28.9358	13.9361	20.5863	13.1359	9.44568	15.2049	14.5316	12.8826	13.7516	18.5205	18.2998	19.4282	29.8331	16.4463	16.9639	25.0105	23.8894	26.4363	22.9464	19.4468	19.5407	23.6087	25.3147

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000719	Prot_kinase_dom
IPR017441	Protein_kinase_ATP_BS
IPR008271	Ser/Thr_kinase_AS
IPR001772	KA1_dom
IPR011009	Kinase-like_dom

Vocabulary: **Molecular Function**
Term	Definition
GO:0004672	protein kinase activity
GO:0005524	ATP binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006468	protein phosphorylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006468	protein phosphorylation
molecular_function	GO:0005524	ATP binding
molecular_function	GO:0004672	protein kinase activity

Blast

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BLAST of TCONS_00005156 vs. Swiss-Prot (Human)
Match: SIK3 (Serine/threonine-protein kinase SIK3 OS=Homo sapiens GN=SIK3 PE=1 SV=3)

HSP 1 Score: 369.392 bits (947), Expect = 4.182e-107
Identity = 172/260 (66.15%), Postives = 208/260 (80.00%), Query Frame = 1

Query:  283 KIGSYHVGKTIGKGMFAVVKMAEHHQAKAKVAIKMIDKSQLDEENLAKIRREVHVMKLVKHSSIIRLYEVMETERYIYLAMEYASSGEIFELLKKEGRRNETQARHMFRQIISAMEYLHQKRIVHRDLKAENLLLDENNRVKLADFGFSNIFDVGSKLKTFCGSPPYAAPELFEGKEYYGPAADIWSLGVVLYVLVCGALPFDGETLPDLKRRVLNGRFRIPYFMSSDCENLIRHMLVVDVNKRYTINQIKRDRWIIQGE 1062
            +IG Y + +TIGKG FAVVK A H   KAKVAIK+IDK+QLDEENL KI REV +MK++ H  IIRLY+VMETER IYL  EYAS GEIF+ L   GR  E +AR  F+QI++A+ + H + IVHRDLKAENLLLD N  +K+ADFGFSN+F  G  LKT+CGSPPYAAPELFEGKEY GP  DIWSLGVVLYVLVCGALPFDG TL +L+ RVL+G+FRIP+FMS++CE+LIRHMLV+D NKR ++ QI + +W+  G+
Sbjct:    4 RIGYYEIDRTIGKGNFAVVKRATHLVTKAKVAIKIIDKTQLDEENLKKIFREVQIMKMLCHPHIIRLYQVMETERMIYLVTEYASGGEIFDHLVAHGRMAEKEARRKFKQIVTAVYFCHCRNIVHRDLKAENLLLDANLNIKIADFGFSNLFTPGQLLKTWCGSPPYAAPELFEGKEYDGPKVDIWSLGVVLYVLVCGALPFDGSTLQNLRARVLSGKFRIPFFMSTECEHLIRHMLVLDPNKRLSMEQICKHKWMKLGD 263

The following BLAST results are available for this feature:

BLAST of TCONS_00005156 vs. Swiss-Prot (Human)

BLAST of TCONS_00005156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
SIK3	4.182e-107	66.15	Serine/threonine-protein kinase SIK3 OS=Homo sapie...	[more]

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TCONS_00005156 (transcript) - C. hemisphaerica