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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=transcript|length=2633bp ATTTGAATCAGACGAGATCATGCTGGATCATATGACGTCATAAGTGAACA ATGGTCCGTCACGCCTATGAGGAGATTCATTTTCAAGTGAGGTGTGGTGT ATAAATAAGGGTTGGATGGAGATCAACAATCAGTTCGGCTCTGATCGTTC ACTtaatcaaaaatcaacaaagagGAAAGAGCCTTTCATGATCAGACGTA TCCGATCAAACAGAGATCAAAATGACACCACAACCGAAAATTACAATTAA CACGACAGGGGAGCAACCGATGCTCGACAAGATAGGTGATGAACAGTCCA GATACGATCCTCTGGTCCAATCACAAATCGAACTTTCATCCACTGAAATC CCAAAATTCACCAAAggagaaaaaatcatttcaaactTATTCAAGAAGAT CGACCAGAATGAGTTGATCACAACTCCTTTACAAGCACAACCTGAGACCA TGCAATTCTTTAACAAAGTCTTTGAAAACATCGTCGACACAAACGACGTT GGACAACTCATTGATGGTCAGAAATGGGAAACTTGGAACGGTGAAAGGAA AAATGAAGTGACAATTGAACGAGATTACAAAGGATTGGAGGCCAGTGATA AATACACGGCACCGATGGATGTTTATGTGGGAGGCCCTGCAACTTGTTTT GGAGCTGCTCTTCAAGCCAACTCTGGTGAAGATGTAAAGAATATCTTGTA TGCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGTGCGAGTT ACCATCATNCTCATGATGGATGCAGAGGAACCAGCAATTGGAAAGGAAGT GCAAGTTACCATCACGTTCATGATGCTATCCCTGTCTATTACTGGCCCAA CAACCATGGAATCTACTCGGTCTACATCACAGCTAAACACCACCTCCAAC GAAGATTCAATCTGGAAGGTTACAAAGAAGAACTGGCAACCATCCCACAA TGGTGTAAGATCAGATGGAACCTTGGAAACACAATGTTCACCAAAGATGC TTGGAAGAATATCAAATTGTTTGCCAAGAATCAGAAAGAAGCTTTGGGAG ACGTCGGCCTTTTCATTGAAGGAACACAGTGGCGGAGGGACGAGGACACG ACCGCATACACCACCATCCGGCATTCGGGCATGTCCGAGAAAATCATTGA ACAACTCGAAGGGTTAGAAAAACCTGTTCTCATCACAAATGATGATCGAG CCAAATGCACTTATGTTCAACTTGGTTCAAAACAAGGTTTAGCTTGGATC AATTCGACGTTGGATCGATTAAATCGAGTGGGTGGCGATTCAGTCGAGTT CTTCAAGAACAGTGAGGAAGAGATTGAATCGAGAGGTTATCCAAGTGATT TTGTGATCCAACAATTAGAGTTTCCACAACATGGCTATTTCCCTCCATAT GCACCAAACGAATTGGAGAACTTGGTCAAAACCAAAGGAGGCAAGGTTCG TGATGATATGCGATTGGAAAAACTCTTCGTTATGCCTTCTAGTCAAGATT ATGATGACGTCACCGTCAACAAAGCACTGTTCCGTAACCTTACTACCGGA CAAGCGGAAATTGTACCGGTCAAGTCCATCTCCATGTCGCTCGGCCCAAG CATGAAATCTCTGAAAGTGAACGGTAAAAACTTGTTGAATCACACCATGT ATGCTAGTGGTGCTTCCACAGTTTTCATGGTCAAAGTGGATGAATCGAAA GTGGACCAATCACAGATGTTGAAATTTCGTGACAACATTGACATGAAGAA CAACCATATTGTGCGTCTTGGTGAACGAGTCGTCAAAGATACTGACTCAG CAAAAACTTATCGAATCTTTGTTTTACAAGTGACCGGCGGAGGACATTTC CCGGCACGACACGCTCACGCCGAAGCTGCCATCAACACTTTCAAAGCATG CACATGTCAACTGTTCAAATTGGACGGCCCGGATGCTACAGAGGGGATTG AGTACGAAGTTGTTCAAGTCAGATCATGTGCTCGAAGTGTCGGCTCGCAA AACGTGTTTCGCCTCAATCTCCCAGCAACCAATGCCGCAATGCTTTATGG GATTGGTGGTATTGGCATCACAACAATGGCCCCAAATGCACTTTTAATGA GAGCAGCTTTGGCGGAACGTGCCAAACTCGGGAACTCTCAACTCGGCTAT AAGCCAGAAGAATACAAAAATAACTTGAGCCAGGGACAATTTGCTGAGAT TCCTTTCTGGAATAAAGAAAACCCATTTGCAGGACGTGATTACGCCAGAT GGGTAGATCATGTTGGCCAACCAAAACAGGTGGCTCCAATCTTATACCCA AATGCACCAAAACTTCCACAGTTTGTATACACAAAACAATATTCAATGGC AGCTTCACAGATGACTCGGTTATTTATGAAGTATAAAACACGTGTGGCTA AACTGATATAAGAACATTTGTTCCAGAACAAGCTTTTAatcaaatacttt tttaataTTGCCAAACGATATATCGTGAGAGATAAAGCTATCATGTGATC ACTATTTACTTCAATGTACATAAATTAAAGAAGTTTGTTATCATTATATA AATTATTACTTCTCAACAATAAgtctttgaaaagtttttttctcgtaCTT CGCAAATTCGAAAGTTTGGTGCTAAAAAACAGT Run BLAST on NCBI protein sequence of TCONS_00005200-protein >TCONS_00005200-protein ID=TCONS_00005200-protein|Name=TCONS_00005200-protein|organism=Clytia hemisphaerica|type=polypeptide|length=729bp
MTPQPKITINTTGEQPMLDKIGDEQSRYDPLVQSQIELSSTEIPKFTKGE KIISNLFKKIDQNELITTPLQAQPETMQFFNKVFENIVDTNDVGQLIDGQ KWETWNGERKNEVTIERDYKGLEASDKYTAPMDVYVGGPATCFGAALQAN SGEDVKNILYAHDGCRGTSNWKGSASYHHXHDGCRGTSNWKGSASYHHVH DAIPVYYWPNNHGIYSVYITAKHHLQRRFNLEGYKEELATIPQWCKIRWN LGNTMFTKDAWKNIKLFAKNQKEALGDVGLFIEGTQWRRDEDTTAYTTIR HSGMSEKIIEQLEGLEKPVLITNDDRAKCTYVQLGSKQGLAWINSTLDRL NRVGGDSVEFFKNSEEEIESRGYPSDFVIQQLEFPQHGYFPPYAPNELEN LVKTKGGKVRDDMRLEKLFVMPSSQDYDDVTVNKALFRNLTTGQAEIVPV KSISMSLGPSMKSLKVNGKNLLNHTMYASGASTVFMVKVDESKVDQSQML KFRDNIDMKNNHIVRLGERVVKDTDSAKTYRIFVLQVTGGGHFPARHAHA EAAINTFKACTCQLFKLDGPDATEGIEYEVVQVRSCARSVGSQNVFRLNL PATNAAMLYGIGGIGITTMAPNALLMRAALAERAKLGNSQLGYKPEEYKN NLSQGQFAEIPFWNKENPFAGRDYARWVDHVGQPKQVAPILYPNAPKLPQ FVYTKQYSMAASQMTRLFMKYKTRVAKLI Run BLAST on NCBI transcript from alignment at sc0000051:367800..372164- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=transcript|length=4365bp|location=Sequence derived from alignment at sc0000051:367800..372164- (Clytia hemisphaerica) ATTTGAATCAGACGAGATCATGCTGGATCATATGACGTCATAAGTGAACA
ATGGTCCGTCACGCCTATGAGGAGATTCATTTTCAAGTGAGGTGTGGTGT
ATAAATAAGGGTTGGATGGAGATCAACAATCAGTTCGGCTCTGATCGTTC
ACTTAATCAAAAATCAACAAAGAGGAAAGAGCCTTTCATGATCAGACGTA
TCCGATGTAAGTTTTGTTTTATATTTATAAATAAGATGAGGGAAAGTGAC
CAGTCGTCTGCATCAATGGGCTTTTCCAGAAAAAAATCGTGCACCCCCTG
TTGAGGAGGTCCATTTCCGTTCCAAGGGGGTAAGGTTTGAAATGCAGTGG
AATTCCATAAGGGTAGACGAAAATCCGTCAAAAATAAGTGGAATTCCAAG
GGGGTAATGATCCTAAAATTGCCTGGAAATCCAAGGGGGTAGGTCACAAA
AGGTTGGACCTCCTCAACAGGGGGTGCACGTTTTTTTTCTGGAAAAGCCC
AATTGACAGGGAAAGTTTTTGAGCAATTGATCTACTAAGCACCTCTCTAA
AACTTGAAAATTATTTTGAATTGTTGGCTCGGACATATACGCGATATCTT
AAAAACTTAGGGGCCACTCACAATATATCGATTTTTCCCACGAGTCCAAG
ACAGTCTAGAAACCAATTTTTTTGTGTGAAAAAACCATGAAAAATAGACG
ACAAAAGTATGCGTAGCAAGAGCAGTTAACAAAGTAAAAAAAATATATGA
CTTCAATTCAATCAGCCTCGAAAATCGATGTTTGTTATGATTGATTATTT
TTTTAGCGTTACTGCCTGTGACCCATCCTCCCTCTCGCATCAATTTGGCG
TTAGTCGTGGCAAACATCGATATACGAGTGGCCCCTTAGCACCACCAACA
GATAGCTGTAATACGAATGTGTCAATCATTTCATGGACCCATTCGTTTCA
AAAATTCACTTCGGCATAATTCATTCCATTTTAGCAAANACCAACAGATA
GCTGTAATACGAATGTGTCAATCATTTCATTGACCCATTCGTTTCAAAAG
TTCACTTCGGCATAATTCATTCCATTTTAGCAAACAGAGATCAAAATGAC
ACCACAACCGAAAATTACAATTAACACGACAGGGGAGCAACCGATGCTCG
ACAAGATAGGTGATGAACAGTCCAGATACGATCCTCTGGTCCAATCACAA
ATCGAACTTTCATCCACTGAAATCCCAAAATTCACCAAAGGAGAAAAAAT
CATTTCAAACTTATTCAAGAAGATCGACCAGAATGAGTTGATCACAACTC
CTTTACAAGCACAACCTGAGACCATGCAATTCTTTAACAAAGTCTTTGAA
AACATCGTCGACACAAACGACGTTGGACAACTCATTGATGGTCAGAAATG
GGAAACTTGGAACGGTGAAAGGAAAAATGAAGTGACAATTGAACGAGATT
ACAAAGGATTGGAGGCCAGTGATAAATACACGGCACCGATGGATGTTTAT
GTGGGAGGCCCTGCAACTTGTTTTGGAGCTGCTCTTCAAGCCAACTCTGG
TGAAGATGTAAAGAATATCTTGTATGCTCATGATGGATGCAGAGGAACCA
GCAATTGGAAAGGAAGTGCGAGTTACCATCATNCTCATGATGGATGCAGA
GGAACCAGCAATTGGAAAGGAAGTGCAAGTTACCATCACGTTCATGATGC
TATCCCTGTCTATTACTGGCCCAACAACCATGGAATCTACTCGGTCTACA
TCACAGCTAAACACCACCTCCAACGAAGATTCAATCTGGAAGGTTACAAA
GAAGAACTGGCAACCATCCCACAATGGTGTAAGATCAGATGGAACCTTGG
AAACACAATGTTCACCAAAGATGCTTGGAAGAATATCAAATTGTTTGCCA
AGAATCAGAAAGAAGCTTTGGGAGACGTCGGCCTTTTCATTGAAGGTGTG
TATGGGTTATTCTATTCTTAGAAAATTTGACATTTTTCTATTCTTGGCGA
TCCTTTTTTCATTCCACATGATAATACGCACGAAAGAAAGTGCTTCTTAC
AACAATCAGTGACAAAATATGTGGCAATTTCTTCAAAAATCCCTCCCCCC
CTATAATATCAGTGTAAATGTGAATTTTTTCTGAGCATTATGTCAGCCTT
TCCACCCATCATACTAGATACTAGGAGGGGGGAGGGAATTCTTGCCACAA
TATTTAGTCACAGAATGTAGTAATAATTTATTGTCAAAAATTTTCCCGAC
CAAGAATTTCAGGATTTTCGCTAATTTTCGAAAATTCACGAAATCAAATG
GTCGCGTAAAAAATCAATATTGCTGGATGGCGAAAATAAATTCCAACGAA
AAAAAAAAAAAAATTCTTCAAATTCGGGAATTTCTTTTATTTTTGTCAAT
CTCATTTATCAAAAATTCTCTTTTTCTAAACTTTTCTAGCAAGGGACTTA
AGCACTCATCAATACAAATACTTTCACTCTCCACTTTATTAACAAGGAGA
AATTTTTTACTCCAATCCTCGTGATCCGCATAATGAAATTTCCACGAATA
ATTTCATTAAATCAAATTCGCGAAATGAAATTCCCGTAAAATACGAATAA
TTTCGCGAATGGCCCGACTCACGAAATTTTCTGGTCGCGAATATTAAAAT
AAATTAATTTTAAAATTGTTATGATTGCAGGAACACAGTGGCGGAGGGAC
GAGGACACGACCGCATACACCACCATCCGGCATTCGGGCATGTCCGAGAA
AATCATTGAACAACTCGAAGGGTTAGAAAAACCTGTTCTCATCACAAATG
ATGATCGAGCCAAATGCACTTATGTTCAACTTGGTTCAAAACAAGGTTTA
GCTTGGATCAATTCGACGTTGGATCGATTAAATCGAGTGGGTGGCGATTC
AGTCGAGTTCTTCAAGGTAGGTTAATGAAAGTATTGCCCCTTCCCCTTCC
ATCTTACAGAATATCAATTTTCAAAAGTGGTTTGTATCAATGTGACAAGT
TTATTGTACAGCTCAAACAAACGTTCTCATCATTTATAGAACAGTGAGGA
AGAGATTGAATCGAGAGGTTATCCAAGTGATTTTGTGATCCAACAATTAG
AGTTTCCACAACATGGCTATTTCCCTCCATATGCACCAAACGAATTGGAG
AACTTGGTCAAAACCAAAGGAGGCAAGGTTCGTGATGATATGCGATTGGA
AAAACTCTTCGTTATGCCTTCTAGTCAAGATTATGATGACGTCACCGTCA
ACAAAGCACTGTTCCGTAACCTTACTACCGGACAAGCGGAAATTGTACCG
GTCAAGTCCATCTCCATGTCGCTCGGCCCAAGCATGAAATCTCTGAAAGT
GAACGGTAAAAACTTGTTGAATCACACCATGTATGCTAGTGGTGCTTCCA
CAGTTTTCATGGTCAAAGTGGATGAATCGAAAGTGGACCAATCACAGATG
TTGAAATTTCGTGACAACATTGACATGAAGAACAACCATATTGTGCGTCT
TGGTGAACGAGTCGTCAAAGATACTGACTCAGCAAAAACTTATCGAATCT
TTGTTTTACAAGTGACCGGCGGAGGACATTTCCCGGCACGACACGCTCAC
GCCGAAGCTGCCATCAACACTTTCAAAGCATGCACATGTCAACTGTTCAA
ATTGGACGGCCCGGATGCTACAGAGGGGATTGAGTACGAAGTTGTTCAAG
TCAGATCATGTGCTCGAAGTGTCGGCTCGCAAAACGTGTTTCGCCTCAAT
CTCCCAGCAACCAATGCCGCAATGCTTTATGGGATTGGTGGTATTGGCAT
CACAACAATGGCCCCAAATGCACTTTTAATGAGAGCAGCTTTGGCGGAAC
GTGCCAAACTCGGGAACTCTCAACTCGGCTATAAGCCAGAAGAATACAAA
AATAACTTGAGCCAGGGACAATTTGCTGAGATTCCTTTCTGGAATAAAGA
AAACCCATTTGCAGGACGTGATTACGCCAGATGGGTAGATCATGTTGGCC
AACCAAAACAGGTGGCTCCAATCTTATACCCAAATGCACCAAAACTTCCA
CAGTTTGTATACACAAAACAATATTCAATGGCAGCTTCACAGATGACTCG
GTTATTTATGAAGTATAAAACACGTGTGGCTAAACTGATATAAGAACATT
TGTTCCAGAACAAGCTTTTAATCAAATACTTTTTTAATATTGCCAAACGA
TATATCGTGAGAGATAAAGCTATCATGTGATCACTATTTACTTCAATGTA
CATAAATTAAAGAAGTTTGTTATCATTATATAAATTATTACTTCTCAACA
ATAAGTCTTTGAAAAGTTTTTTTCTCGTACTTCGCAAATTCGAAAGTTTG
GTGCTAAAAAACAGT Coding sequence (CDS) from alignment at sc0000051:367800..372164- >TCONS_00005200 ID=TCONS_00005200|Name=TCONS_00005200|organism=Clytia hemisphaerica|type=CDS|length=2190bp|location=Sequence derived from alignment at sc0000051:367800..372164- (Clytia hemisphaerica) ATGACACCACAACCGAAAATTACAATTAACACGACAGGGGAGCAACCGAT GCTCGACAAGATAGGTGATGAACAGTCCAGATACGATCCTCTGGTCCAAT CACAAATCGAACTTTCATCCACTGAAATCCCAAAATTCACCAAAGGAGAA AAAATCATTTCAAACTTATTCAAGAAGATCGACCAGAATGAGTTGATCAC AACTCCTTTACAAGCACAACCTGAGACCATGCAATTCTTTAACAAAGTCT TTGAAAACATCGTCGACACAAACGACGTTGGACAACTCATTGATGGTCAG AAATGGGAAACTTGGAACGGTGAAAGGAAAAATGAAGTGACAATTGAACG AGATTACAAAGGATTGGAGGCCAGTGATAAATACACGGCACCGATGGATG TTTATGTGGGAGGCCCTGCAACTTGTTTTGGAGCTGCTCTTCAAGCCAAC TCTGGTGAAGATGTAAAGAATATCTTGTATGCTCATGATGGATGCAGAGG AACCAGCAATTGGAAAGGAAGTGCGAGTTACCATCATNCTCATGATGGAT GCAGAGGAACCAGCAATTGGAAAGGAAGTGCAAGTTACCATCACGTTCAT GATGCTATCCCTGTCTATTACTGGCCCAACAACCATGGAATCTACTCGGT CTACATCACAGCTAAACACCACCTCCAACGAAGATTCAATCTGGAAGGTT ACAAAGAAGAACTGGCAACCATCCCACAATGGTGTAAGATCAGATGGAAC CTTGGAAACACAATGTTCACCAAAGATGCTTGGAAGAATATCAAATTGTT TGCCAAGAATCAGAAAGAAGCTTTGGGAGACGTCGGCCTTTTCATTGAAG GAACACAGTGGCGGAGGGACGAGGACACGACCGCATACACCACCATCCGG CATTCGGGCATGTCCGAGAAAATCATTGAACAACTCGAAGGGTTAGAAAA ACCTGTTCTCATCACAAATGATGATCGAGCCAAATGCACTTATGTTCAAC TTGGTTCAAAACAAGGTTTAGCTTGGATCAATTCGACGTTGGATCGATTA AATCGAGTGGGTGGCGATTCAGTCGAGTTCTTCAAGAACAGTGAGGAAGA GATTGAATCGAGAGGTTATCCAAGTGATTTTGTGATCCAACAATTAGAGT TTCCACAACATGGCTATTTCCCTCCATATGCACCAAACGAATTGGAGAAC TTGGTCAAAACCAAAGGAGGCAAGGTTCGTGATGATATGCGATTGGAAAA ACTCTTCGTTATGCCTTCTAGTCAAGATTATGATGACGTCACCGTCAACA AAGCACTGTTCCGTAACCTTACTACCGGACAAGCGGAAATTGTACCGGTC AAGTCCATCTCCATGTCGCTCGGCCCAAGCATGAAATCTCTGAAAGTGAA CGGTAAAAACTTGTTGAATCACACCATGTATGCTAGTGGTGCTTCCACAG TTTTCATGGTCAAAGTGGATGAATCGAAAGTGGACCAATCACAGATGTTG AAATTTCGTGACAACATTGACATGAAGAACAACCATATTGTGCGTCTTGG TGAACGAGTCGTCAAAGATACTGACTCAGCAAAAACTTATCGAATCTTTG TTTTACAAGTGACCGGCGGAGGACATTTCCCGGCACGACACGCTCACGCC GAAGCTGCCATCAACACTTTCAAAGCATGCACATGTCAACTGTTCAAATT GGACGGCCCGGATGCTACAGAGGGGATTGAGTACGAAGTTGTTCAAGTCA GATCATGTGCTCGAAGTGTCGGCTCGCAAAACGTGTTTCGCCTCAATCTC CCAGCAACCAATGCCGCAATGCTTTATGGGATTGGTGGTATTGGCATCAC AACAATGGCCCCAAATGCACTTTTAATGAGAGCAGCTTTGGCGGAACGTG CCAAACTCGGGAACTCTCAACTCGGCTATAAGCCAGAAGAATACAAAAAT AACTTGAGCCAGGGACAATTTGCTGAGATTCCTTTCTGGAATAAAGAAAA CCCATTTGCAGGACGTGATTACGCCAGATGGGTAGATCATGTTGGCCAAC CAAAACAGGTGGCTCCAATCTTATACCCAAATGCACCAAAACTTCCACAG TTTGTATACACAAAACAATATTCAATGGCAGCTTCACAGATGACTCGGTT ATTTATGAAGTATAAAACACGTGTGGCTAAACTGATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00005200-exon-sc0000051-1575043694:371959..372164 | TCONS_00005200-exon-sc0000051-1575043694:371959..372164 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1575043694:370220..371084 | TCONS_00005200-exon-sc0000051-1575043694:370220..371084 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1575043694:369249..369484 | TCONS_00005200-exon-sc0000051-1575043694:369249..369484 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1575043694:367800..369125 | TCONS_00005200-exon-sc0000051-1575043694:367800..369125 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1510915933:371959..372164 | TCONS_00005200-exon-sc0000051-1510915933:371959..372164 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1510915933:370220..371084 | TCONS_00005200-exon-sc0000051-1510915933:370220..371084 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1510915933:369249..369484 | TCONS_00005200-exon-sc0000051-1510915933:369249..369484 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1510915933:367800..369125 | TCONS_00005200-exon-sc0000051-1510915933:367800..369125 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1491911889:371959..372164 | TCONS_00005200-exon-sc0000051-1491911889:371959..372164 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1491911889:370220..371084 | TCONS_00005200-exon-sc0000051-1491911889:370220..371084 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1491911889:369249..369484 | TCONS_00005200-exon-sc0000051-1491911889:369249..369484 | Clytia hemisphaerica | exon |
TCONS_00005200-exon-sc0000051-1491911889:367800..369125 | TCONS_00005200-exon-sc0000051-1491911889:367800..369125 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
sc0000051 | supercontig | sc0000051:367800..372164 - |
Blast
The following BLAST results are available for this feature:
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