TCONS_00005220 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005220
Unique NameTCONS_00005220
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1563

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005220 ID=TCONS_00005220|Name=TCONS_00005220|organism=Clytia hemisphaerica|type=transcript|length=1563bp
AGAAAATGTTGACCTCACTCTTGATGTTCAAGGTGGACCTTCAAAGTGTG
GGGACAAAGATCTTCCAAAGAATTTCACGTGCAGCAAAGGAGATGAAATA
AGTGGTAGTGTTACATTATGTGGTAAACCTCGACCAAATCTTTCTTGGAT
GATTGGTGATCAATCAATTAATGGTACCATCGATTCAACGAAGGCTGATC
AACATCAATATACTTATTCATTTAAACACAATGCGACGTCAGAGATGTGT
GGAAAAAGCGTTTCTTATCAAGCGACCGGATTTCAGAATAATGAAGTTAG
TGGGAGTGCATTGATTATAAAGGATAAATTCAATATTTCGAATGTAATAT
TCACTCAAGACGACCCATGTCCAATTTTGACATGGAATGCTGATGACCAT
GGATTATGTGAAGTGGATTTGTTTCTGTCTTTTCCACAAAACGATAACAC
AACAAAGAATGCCAAAGTTCCAGTCGCGCAGAAATCCTTTCAAAACTGCA
ATATTACGACTAATGCAACTAACGTTAGCTACAAAACAATTGTGTACTTA
TTAATCGATGGAAAAAGGATTCAGACAAGCTCCAGTAATATAACTTTGGT
AAATGTTGGACTTatgacaacaacaacaacaacgacaacaacaacgacga
caacaacgaccactACGACAACAACACCGACCACTACTACCACTACGAGC
ACCACGCCAATCACCTCTGCTATCTCTACCACTACTACCTCTACCACTAC
TACCTCTAATTATACAAAGCCGCCCAACCAAAATCATAAAAGTGGAGAGA
ACGACCCAAACACGATGCTGATCGTGGGTGTGGTTGTCGGGGTGGCTGTA
TTGATCATCTTGGTCATTGTACTCGTGTGTTGTctcaagaaaatgaaaaG
AGAAGACAAAGCATCTAATGTGCCAATGAAAGAACTGAGAGGAAGTGACA
GCCTTGATGGTAAAGATGTCGAGGGAATGTATGCAAAAGTTGACAAATCT
GCCAAACGAGACAAgCCATCACCCGATGATCTGGACAAAATGTATGCGAA
AGTGAACAAAAACAACACACCAAACAAccaaGCTCCGAAAAACAATgACT
ATGATGAGTTGGCAGCCTACCAAGACACTGCTTCAAATGGggcAACCGCG
AAATCTCCTGAAGAATTATCGTCAATGTATGCTCAAGTTCAAAAGAACAC
AAAACCAGAACCCTCCATCTATTCAGAGTTGGGCCCTGGAGGTCGAGTTG
GGCCTAAGCCTGTGGTCGCTCCTTCAAATTATGCAGAGGCTAAAGACGTT
TACAATGACTATGATAAAATAGTGAATGAGAATGGAGGAGGGGCTAGTTC
AAGTAAACAGAATGATGAGTCAGCATACGCCGCCATACCTGCGAGGGAGG
ACGCCAATACATATGACATTTAAATCccagaagaaaacgaagagcaTATT
TCTCTATATCTTGGTTCTTGACAaagataaaaacgaaaatttcaGACAAC
TACTCCCATGATTTTGACCATCAGTTGGATGTCAACTAGGAAAAGGATAT
TAGCAATAACGTG
Run BLAST on NCBI

protein sequence of TCONS_00005220-protein

>TCONS_00005220-protein ID=TCONS_00005220-protein|Name=TCONS_00005220-protein|organism=Clytia hemisphaerica|type=polypeptide|length=473bp
ENVDLTLDVQGGPSKCGDKDLPKNFTCSKGDEISGSVTLCGKPRPNLSWM
IGDQSINGTIDSTKADQHQYTYSFKHNATSEMCGKSVSYQATGFQNNEVS
GSALIIKDKFNISNVIFTQDDPCPILTWNADDHGLCEVDLFLSFPQNDNT
TKNAKVPVAQKSFQNCNITTNATNVSYKTIVYLLIDGKRIQTSSSNITLV
NVGLMTTTTTTTTTTTTTTTTTTTTPTTTTTTSTTPITSAISTTTTSTTT
TSNYTKPPNQNHKSGENDPNTMLIVGVVVGVAVLIILVIVLVCCLKKMKR
EDKASNVPMKELRGSDSLDGKDVEGMYAKVDKSAKRDKPSPDDLDKMYAK
VNKNNTPNNQAPKNNDYDELAAYQDTASNGATAKSPEELSSMYAQVQKNT
KPEPSIYSELGPGGRVGPKPVVAPSNYAEAKDVYNDYDKIVNENGGGASS
SKQNDESAYAAIPAREDANTYDI
Run BLAST on NCBI

transcript from alignment at sc0000051:497017..509627-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005220 ID=TCONS_00005220|Name=TCONS_00005220|organism=Clytia hemisphaerica|type=transcript|length=12611bp|location=Sequence derived from alignment at sc0000051:497017..509627- (Clytia hemisphaerica)
AGAAAATGTTGACCTCACTCTTGATGTTCAAGGTTTGTCATTTCTTTGAT
CTATGTATTCTGTTATAATTCTTGCTTTTGAATAGAAAGGTTACATGTAA
AGATAGAGAATAAAATAATGTACTCAAGGATGGCGACCTTGCAATTATAT
GGCAACTATAGCGCCCTATCATGAAAAATCAAAAATAAAAGGAAGTGAGG
TCTCATTTCTGGCAGTGCTTCATTATGGTACAGGGTAATTTTTTGCAAAT
ACCTGATATACTAGATACACGCTTTTTTATTTATAAGAATATAAAATTAT
AAGATGAAATTTGCCAAAAAATTAAGAATTTGCTAAGAATGTCACCATCG
TAGAATTTGGCGAACGGAATTTAAGAATGCTATTTTCGAGCATCTTAAAC
CTAAGAATGCAGCTTTTTAAATGCATTTTTAACTTTAAATGCTCAATACT
TTCACGAAAATGCCATTTCATGCTTCAGGTGTGTATTACTTAAATTAATG
TTAAATTTATGTTGAATTTCGTTCCTAACTTAATTATTTTTGGATGATTT
TCCCAAAAAACCACAACATTCTTATTGAAAAAGCGTGTATTTAATACGAA
GTCTCTCAAAATGCTCAAAACTTAAAACAATGTTGTTCAATAACGTGGTT
TTGACGTATGATTTCTCTTTCGTTTCATTTTCTTGTTCAAAGTTGTGTAA
ACGTTTTTTATAAGCAACCAGTTTGCTAAAGCTCTAGGGCTAAAATTTGC
CAATTTTGTTCACTAGTAAAATTTTACTCTCGTAAAGTAAAAGCTTTAAG
AAAAATCTAACCATGGCAAACGACTATGGTAAACAATAGCCCTTGACCCA
AAAAGTATAAATATGGTATAATATCCTGTCAAGTGAAAACCAATTTTCTC
CGTCTATGTGAGAGTATATAAAATTCAACGTTGACAAGCATGAAAAACAC
ATCATCTTTCTATGATATGGTATGGTATAATATCAGGGGTGGTCGAAGCA
ACTTTTTAGGAAATGAGCTAGATTGCTAAGCTAAGCTAAAGTCTTATCCC
AAAATTGGAGTTGCTTATAAAAAGAGTAAAATTTTTGAATAAGTGGCCCT
TCGTAAATTTAAAGGGATAATCAGATGGTTTGAGATATTTGGCATGTGGG
ATCCTTCTATTGTTCTGAGCAAAATCTCATTATACTTTTACCTTTAACTA
TTTTCAAAAGTCGATATATTTAAGTTACAAGTGTTTGGCTTTTAGGATGA
AAACAATAGAATTTTAACGTAAGAACCGTGTAAGAACCCATTTTCAAAAA
TTTTAAACTTTTGGTAAATTGTTACACAAAAATACTTTGAAGGTTTCTGT
AATTTAAATATATCAAACCATCTGATTATCCCTTTACAAAATCACCCAAA
AGGTAAACTGAAGCCACCTCTTCCTTTTTTTCCTAAATCTGAAACTTCAA
AATGCCGAAATTTACTGTTCTAGCCTTTTGACGTTCTAAGAGTCGATGCT
AAACGATTTTAAAGTAATGGGATTTGGGTGTTCTTCCAAACAGCTCCGTG
CGTACTGACATTTCGCTCAATTTGCTGTGTAGGATCTCTTTCGTAAGTCT
CGCTGATGAAAAGTTGACTGGCATTGCGACAATACAATATCCATGTTTTG
AAATAAAACCTATTGATGGTGTACAGTATAACCATGCAATTTACAATGAA
ATTACAAAGTCGATAATTTCAAAATCCAAGATGCTACATAGATGACTGTG
ATTCTAGCAGTTTTTTGTGGTCAAGGCCATACATAAAGACAGTTTTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNTGTATAAAGTAAGCAGAGATTTTCTTGGTACATGTTTGCGAAGTCT
GTTAATGAGGCCAATACCTTTGTTGGCCTTTTTTATTTTTTCGTCTAAAT
GGTGACTGAATAGACAGGTTTAGGCGTGATTAATTAGTGGCGATTGGAAT
TGTTATTCCACTCAATTATTTATTGTCCCAAGAGAGCTAAAATGCCAAAA
GTTAGCCAATCATCATAAAAAATTCAATCAACAATATTATTGAAGTCATG
TAATTTTATTTTCTTCATATCGGTAAAGGGTGGATGGGTTGGACAGAAAA
GTCAACCTCTCCAAGAAAGAAAACGTAGCAAAAAAGATTTTTAAGATACA
TTGAATGCTAATTGAATAAGAAATTTTAATAAGAATAAGCCATAACAAAT
AGAAAGCCCTCTGTTTTCATCGGGAATCACCAGGATCATGTGTTGTTAAA
CCACCATCCCTGGTCGTGTTCAGACCAAGGTTTAAAGCAATTAGGTCTAC
ATGTTTCTTTTATATTCCTTTTGTATTTAACGGCACGCTTCTCATTAGTT
AAACCAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCTCTAGCA
GTAATGGCTTCAACGAACACGAATTAGTGTTTTGCAGAGGGATTCCCTGA
AATCTTTTTTGTTTCAAAGTATCTCAAGAGGAAAGATGACATGATTTCAA
GTTAGGAAAGGAGATTCCTCGAGATCGCCAATCGATGCTGACAAAAGAAA
AGTGATTATAATTGAATTTCCATATCAACAAAGTACTACTCAAACCTTAA
ACTTTAACTTTCAGGTCTGAACACGACCTCTATGTTTCGCACGCTCGTTA
TGGTAACAACAATAACAACAACACTGAAGCGAACATCTAGCATTTGATTG
GATGTTCAAACGCCATAAAATTTTAGTTAATTTTTACTTTTTTTTGAAAA
ACCTGTATCTACTTTATATGAAAACGACAGAAACAATACAAAACTTTTAC
TAAAAGTAATTTCCAATAAAATTTATCAGATCAGTGCTGATTTTGATTGC
TCTCACAGCTTTTTCAATGAAGAGCAAAGTTAACTTTTTAAACCGAATCG
GCGGCATTTTTCAAACCCACAAACATTATTATTATTCACAAGAATATATA
CACTTATCATTTTCGTCTTGTGACGCGGATCTTCGCAAAAGATGCGGGAG
GACGTGTCCCCAATCGCATTTTCCTCAACAATGTGAGAATATTAAAGTGT
CTTAACTTCGATTCTGATTTCTACATTAGTCATGAATATTTTTGTTACAA
TATAGATAAAAGTTTAACTCTGTCAGGAAGTTAACATGAAAGTATCTTTG
TGCAGAGATACCCTATTCGGCTGAAACTCATTAAGAATTTTCCAAACTTC
CAGGTGGACCTTCAAAGTGTGGGGACAAAGATCTTCCAAAGAATTTCACG
TGCAGCAAAGGAGATGAAATAAGTGGTAGTGTTACATTATGTGGTAAACC
TCGACCAAATCTTTCTTGGATGATTGGTGATCAATCAATTAATGGTACCA
TCGATTCAACGAAGGCTGATCAACATCAATATACATATTCATTCAAGCAC
AATGTGACATCAGAGATGTGTGGNAACATCAATATACTTATTCATTTAAA
CACAATGCGACGTCAGAGATGTGTGGAAAAAGCGTTTCTTATCAAGCGAC
CGGATTTCAGAATAATGAAGTTAGTGGGAGTGCATTGATTATAAAGGATA
AATGTAAGTTTTGTTTGTTTTTTTAAATTTCATTTATACCTCAAATGAAA
TTATATTTGTCGGAAAGTTAAGTCGGTGATTTGATGATGTTACATTTGAC
AAATAATATACTAGTAAAAGAACAGTCAGAAACTTCCTGAAAACTACATA
TTCGATCTTGACGATAATGACCTCTTTTTGTGAAGGCTGTTGATAAACAT
AAAGCTTCTGATTGGTTGTTTTGATCGGTCACCTGTTTCTTGGTAATCAT
TATACTATTAGTTACACGGTCTTCTCGAGGTGGGATACGGGATAAACAGG
GTCAGTGAAAACCGTATTGGTGGCGAGGCTTGTCGAGTCCCAATACGGTT
TTTACTGATCCCTGTAGTATATCCCGTATCCCACCTCGAGACGACCGTGC
AACGGATTTATCCCGTGGAAGTCCCTTTGCAAAATTTTCTCTCCAACCAG
TTACTTACAATAAAGAGCAAACTGTAAAAGCGGGATTATGTGAAATAAAC
AGAAATAAACAATTTATAGCATCGCAATTGAAAGTCTTGCTCAATCCATA
TCAACCAAAGAAAAGTAAAAATCAAAATAACTTAAATTAAAGATTTTCTG
CATCATTTTGACACAAACATTCTCAATCACTGTTTTCCCCTTGTTTTATT
TTTCTTTCAAAACAAAACATTCGAATCTTGATCAAAACATTCGAAAGCGC
ATTCGTCAATATGCAATGTCTTCTTCTTTTTCTCAAATGAATGTGAGGAA
GGCAGATACGGTTTATATCCCACCTCCACGTGATGTCTTTCGACCAATGG
AATCGCGAGAATCTTACTGATGCGGGATAAAAAAACAATATTACGCTAAA
ATTACGTATAAATTGGGTTTTACGTTATTCTGTTACTGAAGGCTAATTTG
TCAAACAATGAAAAGTGACCAATAAAAGATTTCTTCCAAAGTAATTTCGT
ACTTTACTGACCAGTCTGTAAAATTCAATGGAATACTGAAGCTTTTATCT
TTATTTGTGATTCAGTCCTCAAGGTAGTAAACAAGTGTGCGCATTCGAGC
GAATGAACTTTGAGCGTGGAATTTCCACACCGCCTTAGATTTTTGCTAGA
TATTTAGTAAGCCCGACTTGTGACGAATTTCATAAGAATTTGTGAAAAAT
TGGAACAAACCGCCAAATTTGAACCAATAAAGCCTAATACCCTATGGATT
GATATTAAAAGAGTTGTAAAGAAAAAAGAATAATGTTAACGGCTACATTT
CTGTACTGAACGGGAGCTATTTGATTTTGGAAGTGGTGATTTCTCCTTTA
TTTATGTCATAAGTTGACCCGGGGGTTGACCCTTTTAAAGTCTCTCTAAG
GGTCGGAAAAATTATAAAGTTTCAAATTAGTCTCTCTAAGGGGCGGAAAA
TTCACGATTTTTAGGAAATCTGGAAGAAAATGAAAGAAAATTATAAAAAA
AAGTCTCTAAGGGTCACTTTTCAGCAAAGATCAGTCTCTCTAAGGGTCGG
TTTTCGGAAGTGCCGTCCGCACATACCCCTCATCCGCCAACCCTAGTACC
CCCCCCCCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NTTTCTTTTACATATAACTTTTGAAGGAATTCTTCAATCTTTATAAATTT
GGTATTGTTGGAGAGATATTTGTGAGTGGAACAATTTGAAATAAAAAAGT
TTTTAAGAAGATTCTAAAAACGAAGATGAAAACGAAGAAGAAAAAAATGA
AGATCTTGTAGAAAAGTGCTATAACTTTCATTTTCACTGGAGAGATTTTT
TGATCTTAGGAGGTCATCACTGTGAAAAAATTTCACTAAAATATTTATTC
AATATAAAGTTATGATACAAAGTTGATAAGTGATTGACCCCAAAAAAACA
GCAGAAAACAGCAAAAAAACAGCGTTTTTAGACGTCAATAACTTTGTTTG
ATATCTTTTGACTGAATGATTATTTTTGAGAAATCTTTTCATAGTGATGA
CGTTCGATGATCAAGGATTCACTTCAGTGAAAATGATAGTTTTAGCAATT
TTCTACAAGATCTTCATTTTTAGAATTTTTTTAAAGATTTTTTTATTTCA
AATTGTTCCATGCACTAATATCTTTCCAATGATACCAAATTTATAATAGA
CTTTAGTTATGTTTGGTCAAAATTTGGTGCTTCGTTCCAAAATTTGCACG
ATAATTATACCAATCGGGCCAATTAATCAGACTGGTCTGTAAAAAGTGCC
AAAGCGACAAATCTTTGCACGCAGGTTATTTTTTTTGACAAGTCAGCCTT
CTTGGTGGAGTTTTTAGTCAAGTTGTTCGAGCCAATTTTCTAATACGTGA
TTTTACTTATTTACATTCCGGTCTTACAACAACCAAACAGTTTGCCTAGC
TGTAAAATGTATTTATTCTGCGGGAAACTTGAAAAGATCGATAGCTTTCA
GAGCAATCGATCAATCTACTAAATCACTTTACTTTTTTCAATACGTATTT
TAGCTTATTAGTAATTAATAGGAAATATCTTATAGTGTTATTGGTATTTT
AAGATATTTTTTTCTCAACTAGTCAATATTTCGAATGTAATATTCACTCA
AGACGACCCATGTCCAATTTTGACATGGAATGCTGATGACCATGGATTAT
GTGAAGTGGATTTGTTTCTGTCTTTTCCACAAAACGATAACACAACAAAG
AATGCCAAAGTTCCAGTCGCGCAGAAATCCTTTCAAAACTGCAATATTAC
GACTAATGCAACTAACGTTAGCTACAAAACAATTGTGTACTTATTAATCG
ATGGAAAAAGGATTCAGACAAGCTCCAGTAATATAACTTTGGTAAATGTT
GGACTTATGACAACAACAACAACAACGACAACAACAACGACGACAACAAC
GACCACTACGACAACAACACCGACCACTAGTAAGTCTATGTTAATTGCCA
TCGAGATTTTACATTCTTCTGTGACACGGAATGTGATATAATCTTCAACC
AATGAGATGTTTTATTTTGAGGGTAAAACAAACAATAAAGTGGTTTGATT
GTACAAGCAAGGCTTGGGTCTCGAAACCCGCTAAAAGGTGCTGAGAGGAT
CTCACAACATGAAAAGTAAAATGTCAATCAAGATTTTTGTAATGATTTTT
TCCGTTACGTTTCTGTACTGTTTTTACAAAGCACCCTTCTTTCCTCTCTT
GCGTCCTCAGCTACCACTACGAGCACCACGCCAATCACCTCTGCTATCTC
TACCACTACTACCTCTACCACTACTACCTCTAATTATACAAAGCCGCCCA
ACCAAAATCATAAAAGTGGAGGTACTAAAAACACTTTTTCTTTAAATTGC
ACGACCTTCAAAAGCACGCATTCTGGAAGTCAATTACGAAAATTATGTTT
CCTTAGAATTATCTGAATATAGCATATTACGAAAAATATATATATATAGC
TGAATTATATTATTTGATATCTTTATCTTAGAGAACGACCCAAACACGAT
GCTGATCGTGGGTGTGGTTGTCGGGGTGGCTGTATTGATCATCTTGGTCA
TTGTACTCGTGTGTTGTCTCAAGAAAATGAAAAGTGAGATTTTTTTTGTT
AGCTTTTTGTTTTGATTTTCTCAATTTTTTTATAGTAGGGGGGAATTTGT
TCGTTTTTTGAGATCGCTCGACTTTTTTAGTTAAAGCACTTGTTATACAT
TTTTGGAAAGCTAAGGGGTAGGTGAATCAAAATAACTTGGGTGCCAATAC
CTAGAGACATTAACCCTTAAAAACAGTGTTTTCAGCCAGAAACAGTTGTT
TTGTCCAATTTTTGCGCTTTTGGAAGCTCATTATCTCGAGTTAGGTACTG
AAATCACCTATACTCGCAATATATCACTAATCTTAATTTTTTGAGAGCTT
TCCGAATATATACAACAGTTCTGTATTTTCATTAATTTTTGACCCTATAA
TTTTTGCCTGAGACTGTCATATTTGTCCGAAAATCACACCAAAGTGTCCG
AAAAAAAATTGGCACCGAAGTTATTTTGATTCCCCTACCCCTTAGCTTTC
CAATGTATAAAAATGTATAACAAGTGCTTTGACTAAAAAAATCAAGCGAT
TTTACAAATTTCCCCCTACTATTAGTAGAATATGGAAACAAGTGTTCAAA
TGTAACCATTTTTTTTTATTTCGATTCCAGGAGAAGACAAAGCATCTAAT
GTGCCAATGAAAGGTAAATTTTTAGTGAATTTATTTTCCTCCTTTTGGAG
GCACACAAGTTTTTAAAAATTTAGATATGTTAATTTTCTATTCTGTTTTT
GTTTTGACCGACGTTTTTCTTTCTTACATTCAGAACTGAGAGGAAGTGAC
AGCCTTGATGGTAAAGATGTCGAGGTATGATTAATTTGAATCGTTTTTGT
TAAAAAATTATTCGACTTTTTCTAACATATCTGAATCAACATCAATGTTT
TTTAATCAGATACCTAATTTTGACATTCGATCAACTTTTTTAGGGAATGT
ATGCAAAAGTTGACAAATCTGCCAAACGAGACAAGTATGGACTTTTTCTA
TTTGCTTCACTCTGTTTAAGTAGGGTAACGATGGATGTTAATGAGCAAAC
CTATTTAGCAGTAAAATCGCGCTATTTTTGTTGATTACGAATGTATTTAA
AAACAAAATTAGAGCGCAAGCGGTGCATATTTGAGCAAATACTATATTCA
GATCTTAAAACCATTTATTTTCTTTATTATTTAGGCCATCACCCGATGAT
CTGGTAAGAACTTTTCATTTCTTTTTTTTAGCTCTATTAAATAATACTGT
TGCTGATTGACTTTTTGGACCTACCTCCGGGTACCCCGGTGGAGGTTCTA
TAAATTAACCCATGTCCGTCCGTTCGTCCGTCCGTCCGTCTGTCTGTTAC
CAGCTTTTCTCAAGATTGGCTCATTAGTTTTTTCTGATTTTTTGCACAAT
GATGCAAAATGGCAATGCCCAGAACGTGACGGNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NGTCATTACTTTTTTCTGATTTTTTGTACAAAGATGGAGGGCAAGATTCT
CTAAAGAATGGCTGAAGTGGTTTTTCCCGGAAAATTTTTATTCGCCTTAA
AAACGGATTTTTTTTGGGGGGGGATTCCCTTTAACCAAATAAGAAAATAT
AGCTTTTCTCAATGTTGACTCATTATTTTTTTCTGATTTTTTGCACCATG
ATGCAAAATGGCAATGCCTAAAATGTGTTGGAGCCCGATTTTCGAAAAAA
AATATATTTGGGCAAATTTGGGCCAAAAACTGCCTAAAAATAGAGTTTTT
TTGGACTCTGTGTAAAATCCTGTCATTACTTTTTTCTGATTTTTTGTACA
AAGATGGAGGGCAAGATTCTCTGAAGAATGGCTGAAGTGGTTTTTCCTGG
AAAATTCTTATTCGCCTTAAAAGATGGATTTTCGTATTTTGTGGAAATTC
CCTTTAACCTAATAAGAAAATATAGCTTTTCTCAATGTTGACTCAATGGC
AATGCCCAAAATGTGACGGAGCCTGATCTCTAAGGAATTTTTTTTTGGGC
AAATTTGGGCCAAAAACAACTTAAAAGGTTTTTTGGGCCTGAATGGTTTA
AGTGATTTTCGTATTTGGGGAAATTCCTTTTTNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTCCATT
CTGAATTTTTGTACAATTATTGTCACTTTTTTCTTATTTTCATCTGATGT
TAATCATTAGGTAGGTCCATTCAGCATGTTGCTTGTTATTTATTAATATT
ATTTAAATAAGCTTGTCGATTAAATATCCTATTTTCCACAGGACAAAATG
TATGCGAAAGTGAACAAAAACAACACACCAAACAAGTAAGTCCGAACCAA
TTGCTTTCTTTTTTTTCTGGTTCATCTAATTGAAAGTATAATAATTTGTT
CATGGTTTTGTAATAATAAATATAATCAAATTTTAAGTTTTCCATTTTTT
CTTAATTTTTCAGCCAAGCTCCGAAAAACAATGTAAGTTTTGATTTTTAA
TCAACTTAGTTTTTCCCATTATACTTTCTATGAAACTGCGTTGCAAAATC
TGGAAAATTATATTTCCAAACTGACGGGATTTACAACTGTCCTCCGACAC
AGCTGATAATATGAATCGTTTTAACCCTTTAGCGACTGCGACCGTTATTT
ATCCGTGGCTTTTTCAACTGACTCTTCTTAATATTGAAATACCTCGGTTT
TTCACAAGCCGTGCCAAAAAGACTGAAGACGAATTATCTCCTCATCAGTC
GTTAAAGGGTCAACCCTTTTACCTAGGTACATCTTTTCGATGGAACTTTT
GTTATTTTATTTTAGGACTATGATGAGTTGGCAGCCTACCAAGACACTGC
TTCAAATGGGTAATTCAATGATTTGTGATTGTATCTGTGTGTTTTATCTT
CCATTGGGAAAATCGAACCATTTGGTCCTTTTGATATTTTTATATGACTT
TCTGTAGAAATCTAACGAATGAATTCATTTTTTCAATTTTCAGGGCAACC
GCGAAATCTCCTGAAGAATTATCGGTATACATTTTCCCTTTTTGTATTCG
TTTATTGATTTGAAGCACAAAAAGTAATAGGATCGACAGCCAACAGTTGA
TTTTTATTTCGATTAAAGACTTCTTTATTACTTTATTACTTTATGACTTC
TTGAATATGAAAGAATATTTCAAGAGCATGAAATTTTGGTTTCTAAACGT
TTTTTTTAATAAGAAACAAACGACTAATTTTAGTAGATCGTCACTATTTG
TGTTCTGAATGATTTTTAATGGTCATGCTCACATAGATATCATTTATATA
TGTGTTAAATGCATAACCAGGTAGGTTCATAAAAGTATCACTTGTTTCTC
AACAAATATTTGATTCCCTTTCAGTCAATGTATGCTCTTTTTCTCAACAA
ATATTTGATTCCCTTTCAGTCAATGTATGCTCAAGTTCAAAAGAACACAA
AACCAGAACCCTCCATCTATTCAGAGTTGGGCCCTGGAGGTCGAGTTGGG
CCTAAGCCTGTGGTCGCTCCTTCAAATTATGCAGAGGCTAAAGACGTTTA
CAATGACTATGATAAAATAGTGAATGAGAATGGAGGAGGGGCTAGTTCAA
GTAAACAGAATGATGAGTCAGCATACGCCGCCATACCTGCGAGGGAGGAC
GCCAATACATATGACATTTAAATCCCAGAAGAAAACGAAGAGCATATTTC
TCTATATCTTGGTTCTTGACAAAGATAAAAACGAAAATTTCAGACAACTA
CTCCCATGATTTTGACCATCAGTTGGATGTCAACTAGGAAAAGGATATTA
GCAATAACGTG

Coding sequence (CDS) from alignment at sc0000051:497017..509627-

>TCONS_00005220 ID=TCONS_00005220|Name=TCONS_00005220|organism=Clytia hemisphaerica|type=CDS|length=1422bp|location=Sequence derived from alignment at sc0000051:497017..509627- (Clytia hemisphaerica)
GAAAATGTTGACCTCACTCTTGATGTTCAAGGTGGACCTTCAAAGTGTGG
GGACAAAGATCTTCCAAAGAATTTCACGTGCAGCAAAGGAGATGAAATAA
GTGGTAGTGTTACATTATGTGGTAAACCTCGACCAAATCTTTCTTGGATG
ATTGGTGATCAATCAATTAATGGTACCATCGATTCAACGAAGGCTGATCA
ACATCAATATACTTATTCATTTAAACACAATGCGACGTCAGAGATGTGTG
GAAAAAGCGTTTCTTATCAAGCGACCGGATTTCAGAATAATGAAGTTAGT
GGGAGTGCATTGATTATAAAGGATAAATTCAATATTTCGAATGTAATATT
CACTCAAGACGACCCATGTCCAATTTTGACATGGAATGCTGATGACCATG
GATTATGTGAAGTGGATTTGTTTCTGTCTTTTCCACAAAACGATAACACA
ACAAAGAATGCCAAAGTTCCAGTCGCGCAGAAATCCTTTCAAAACTGCAA
TATTACGACTAATGCAACTAACGTTAGCTACAAAACAATTGTGTACTTAT
TAATCGATGGAAAAAGGATTCAGACAAGCTCCAGTAATATAACTTTGGTA
AATGTTGGACTTATGACAACAACAACAACAACGACAACAACAACGACGAC
AACAACGACCACTACGACAACAACACCGACCACTACTACCACTACGAGCA
CCACGCCAATCACCTCTGCTATCTCTACCACTACTACCTCTACCACTACT
ACCTCTAATTATACAAAGCCGCCCAACCAAAATCATAAAAGTGGAGAGAA
CGACCCAAACACGATGCTGATCGTGGGTGTGGTTGTCGGGGTGGCTGTAT
TGATCATCTTGGTCATTGTACTCGTGTGTTGTCTCAAGAAAATGAAAAGA
GAAGACAAAGCATCTAATGTGCCAATGAAAGAACTGAGAGGAAGTGACAG
CCTTGATGGTAAAGATGTCGAGGGAATGTATGCAAAAGTTGACAAATCTG
CCAAACGAGACAAGCCATCACCCGATGATCTGGACAAAATGTATGCGAAA
GTGAACAAAAACAACACACCAAACAACCAAGCTCCGAAAAACAATGACTA
TGATGAGTTGGCAGCCTACCAAGACACTGCTTCAAATGGGGCAACCGCGA
AATCTCCTGAAGAATTATCGTCAATGTATGCTCAAGTTCAAAAGAACACA
AAACCAGAACCCTCCATCTATTCAGAGTTGGGCCCTGGAGGTCGAGTTGG
GCCTAAGCCTGTGGTCGCTCCTTCAAATTATGCAGAGGCTAAAGACGTTT
ACAATGACTATGATAAAATAGTGAATGAGAATGGAGGAGGGGCTAGTTCA
AGTAAACAGAATGATGAGTCAGCATACGCCGCCATACCTGCGAGGGAGGA
CGCCAATACATATGACATTTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002966XLOC_002966Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005220-proteinTCONS_00005220-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005220-exon-sc0000051-1575043694:509596..509627TCONS_00005220-exon-sc0000051-1575043694:509596..509627Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:505054..505224TCONS_00005220-exon-sc0000051-1575043694:505054..505224Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:504875..505000TCONS_00005220-exon-sc0000051-1575043694:504875..505000Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:501749..502105TCONS_00005220-exon-sc0000051-1575043694:501749..502105Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:501357..501467TCONS_00005220-exon-sc0000051-1575043694:501357..501467Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:501095..501196TCONS_00005220-exon-sc0000051-1575043694:501095..501196Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:500465..500497TCONS_00005220-exon-sc0000051-1575043694:500465..500497Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:500304..500344TCONS_00005220-exon-sc0000051-1575043694:500304..500344Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:500144..500184TCONS_00005220-exon-sc0000051-1575043694:500144..500184Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:499925..499943TCONS_00005220-exon-sc0000051-1575043694:499925..499943Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:498493..498536TCONS_00005220-exon-sc0000051-1575043694:498493..498536Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:498346..498364TCONS_00005220-exon-sc0000051-1575043694:498346..498364Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:497969..498012TCONS_00005220-exon-sc0000051-1575043694:497969..498012Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:497804..497834TCONS_00005220-exon-sc0000051-1575043694:497804..497834Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1575043694:497017..497408TCONS_00005220-exon-sc0000051-1575043694:497017..497408Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:509596..509627TCONS_00005220-exon-sc0000051-1510915933:509596..509627Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:505054..505224TCONS_00005220-exon-sc0000051-1510915933:505054..505224Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:504875..505000TCONS_00005220-exon-sc0000051-1510915933:504875..505000Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:501749..502105TCONS_00005220-exon-sc0000051-1510915933:501749..502105Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:501357..501467TCONS_00005220-exon-sc0000051-1510915933:501357..501467Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:501095..501196TCONS_00005220-exon-sc0000051-1510915933:501095..501196Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:500465..500497TCONS_00005220-exon-sc0000051-1510915933:500465..500497Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:500304..500344TCONS_00005220-exon-sc0000051-1510915933:500304..500344Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:500144..500184TCONS_00005220-exon-sc0000051-1510915933:500144..500184Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:499925..499943TCONS_00005220-exon-sc0000051-1510915933:499925..499943Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:498493..498536TCONS_00005220-exon-sc0000051-1510915933:498493..498536Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:498346..498364TCONS_00005220-exon-sc0000051-1510915933:498346..498364Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:497969..498012TCONS_00005220-exon-sc0000051-1510915933:497969..498012Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:497804..497834TCONS_00005220-exon-sc0000051-1510915933:497804..497834Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1510915933:497017..497408TCONS_00005220-exon-sc0000051-1510915933:497017..497408Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:509596..509627TCONS_00005220-exon-sc0000051-1491911889:509596..509627Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:505054..505224TCONS_00005220-exon-sc0000051-1491911889:505054..505224Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:504875..505000TCONS_00005220-exon-sc0000051-1491911889:504875..505000Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:501749..502105TCONS_00005220-exon-sc0000051-1491911889:501749..502105Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:501357..501467TCONS_00005220-exon-sc0000051-1491911889:501357..501467Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:501095..501196TCONS_00005220-exon-sc0000051-1491911889:501095..501196Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:500465..500497TCONS_00005220-exon-sc0000051-1491911889:500465..500497Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:500304..500344TCONS_00005220-exon-sc0000051-1491911889:500304..500344Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:500144..500184TCONS_00005220-exon-sc0000051-1491911889:500144..500184Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:499925..499943TCONS_00005220-exon-sc0000051-1491911889:499925..499943Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:498493..498536TCONS_00005220-exon-sc0000051-1491911889:498493..498536Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:498346..498364TCONS_00005220-exon-sc0000051-1491911889:498346..498364Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:497969..498012TCONS_00005220-exon-sc0000051-1491911889:497969..498012Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:497804..497834TCONS_00005220-exon-sc0000051-1491911889:497804..497834Clytia hemisphaericaexon
TCONS_00005220-exon-sc0000051-1491911889:497017..497408TCONS_00005220-exon-sc0000051-1491911889:497017..497408Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000051supercontigsc0000051:497017..509627 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.82875	1.42666	1.24236	1.92447	5.05565	1.75392	5.47695	5.6873	4.95912	4.7216	6.20622	2.54313	10.2952	5.93742	12.688	15.065	7.43504	8.67332	13.0876	16.9069	5.65938	4.58533	3.97592	4.81603	9.00516	9.38391	2.84613	3.10282	7.65232	6.71921
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005220 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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