TCONS_00005344 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005344
Unique Name	TCONS_00005344
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1635

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000052:407658..415185-
coding sequence from alignment at sc0000052:407658..415185-

transcript sequence

>TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=transcript|length=1635bp
TTCACCACCAGGCTACTTTTGATTTGAACTACTGCAACCAAACTCACAAG
TGAATAAATCTACTATACTAGACTATAAATCATTTTTCTCAAAGTGAAGA
GTATAAAGAGAAATTATACTGTATTattaatttatgaatttttcacAATG
CtagaattattaaaaaatatggCTTTAAATAGAGGACAAATAATTGTGTT
TGGAATGACATGGGTTATCTATGCATCGTCATATCTGCTGCGTAAACCTT
TAGGAGTGatCAAAACAGACCTGGAAGCATATTATGGGCTAACTCCAACT
GAATTAGGATGGCTGGATACTGCATTTTTATTACCCTATGCTTTTGTAGC
TaTAATGTTTGGTAATTTAGGTGATAAATATGGCAATCGTAATATTTTAG
TTGTCAGTTTGTTAGCAATGTCATTCTCCATGggAAGTTTTGGATTTTGG
GATTCACCCAAAGTGTTTGCGGTTTTACTTTTCATAAATGGAGGTGCTCA
GGCGCAACTTTATTGCAATATAGCACGGTTTTTGACATCCTGGTTTGATT
CATCACAGAAGACTACCATGTTCGGCATGTGGGGCACGGCACCCTTTGCT
GGTGGCATCATTGGAACAGCGGTAGCAGTTGAATTACAAAGACGATTTTC
AGGTGATCTGAAAATGATGTTCCTCGTCCCCTGTGTATGGATTTTCTTTT
TGGCCATCGCAActcatttctttttgaaatttcctcaTGAATGTGGAATG
GAATCACCGGATCCAGAAAAACAACAATTGAAGGAGGATGAGCCTACAGC
TGTACAACCAAAGAAAGCTTTGAATTTCATCGAAACCTGGAAGATCAAGA
TGGTACCCGAATTATGTTGGAGTATGTTTGGTGCAAAATTAGTTCGATAT
TGTTTGTACATGTGGCTACCAATGTACCTGGCTAAAGCGTTGAAATATGA
CAAAGGTTATGCTGGTATGTTTAGTACGACGTTTGAAATTGGAGGTGTAT
TTGGATCATTTTGTAATGGATTTTATATCAATAGATTAATGGGAGGTCGA
AGCTATCTTGGTGTTTTCGTCGCATTCGCTACAAGCGGTCTATCACTCTA
TCTCTTCGAACTCACAAGCACTTGGTCTgttttctttaatttcatcTTCC
TTTTCATGGCTGGTGCTGCAAATTGCGGACCAGATCTTGTCGTTTCTGGT
TCCCTAGCAACAGAGGTTGCCAAGGCAGCAAACGCAGAATCAGCCGTTGC
TGGGCTTGTAAATGgtTTTGGTAGCCTGGGGACTATAATAGAAGGACCTT
TCATCGCATTTGTAATGACTCAATTTGGATGGAGTGGTGCATTCTATTCA
ATGGTGTTTTTATCACTTGGCGCCTCTCTGGCGGTCGGGAAAGCAGCCTT
GGCAGAATATCGAAAATGATCTTTAACTTTAATATGTACAATTTCTATGA
ATACTCGTTAAGTTTAGAAataaaagggataatcagatggtttgagatgt
tTGGCCTGCAGAAACCTTCTTTTGTTGTAAAAgtaaaagggataatcaga
tggtttgagatgttTGGCCTGCAGAAACCTTCTTTCGTTgtaaaagggat
aatcagatggtttgagatgttTGGCCTGCAGAANN

Run BLAST on NCBI

protein sequence of TCONS_00005344-protein

>TCONS_00005344-protein ID=TCONS_00005344-protein|Name=TCONS_00005344-protein|organism=Clytia hemisphaerica|type=polypeptide|length=423bp
MLELLKNMALNRGQIIVFGMTWVIYASSYLLRKPLGVIKTDLEAYYGLTP
TELGWLDTAFLLPYAFVAIMFGNLGDKYGNRNILVVSLLAMSFSMGSFGF
WDSPKVFAVLLFINGGAQAQLYCNIARFLTSWFDSSQKTTMFGMWGTAPF
AGGIIGTAVAVELQRRFSGDLKMMFLVPCVWIFFLAIATHFFLKFPHECG
MESPDPEKQQLKEDEPTAVQPKKALNFIETWKIKMVPELCWSMFGAKLVR
YCLYMWLPMYLAKALKYDKGYAGMFSTTFEIGGVFGSFCNGFYINRLMGG
RSYLGVFVAFATSGLSLYLFELTSTWSVFFNFIFLFMAGAANCGPDLVVS
GSLATEVAKAANAESAVAGLVNGFGSLGTIIEGPFIAFVMTQFGWSGAFY
SMVFLSLGASLAVGKAALAEYRK

Run BLAST on NCBI

transcript from alignment at sc0000052:407658..415185-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=transcript|length=7528bp|location=Sequence derived from alignment at sc0000052:407658..415185- (Clytia hemisphaerica)
TTCACCACCAGGCTACTTTTGATTTGAACTACTGCAACCAAACTCACAAG
TGAATAAATCTACTATACTAGACTATAAATCATTTTTCTCAAAGTGAAGA
GTATAAAGAGAAATTATACTGTATTATTAATTTATGAATTTTTCACAATG
CTAGAATTATTAAAAAATATGGCTTTAAATAGAGGACAAATAATTGTGTT
TGGAATGACATGGGTTATCTATGCATCGTCATATCTGCTGCGTAAACCTT
TAGGAGTGGTAAGTATTTTCTTTTGCTTCAGATCTTATAATGATAACTTC
TTTATATAAAAAGACTTAATTGAAAACTTAATGAATTATGAATATCTTTT
TTTCATAGAGTAATATCATACCGTGGCAAATTTAAAAATAGACTGAAACT
CAATCCTAAATTCAATCCCATCACCCTTTGCGTTTAATACGCTTGCAAGT
AAATTACACTCAATTGCAAAGAAAAAGTAATAACTTTCACAACTTTTGAA
TCAAGACGAGAAGGATTGTGGGATTGAATTTTGGTCAAATGAGAGCAGAT
GAGAGAAGTAATAATCATGACTATGTTTGCATAACGAAGTGCTATCAAGC
AAGTGGTAGAAAGTGACTAATTTTTAAATGATCTCATCATTTCCTATTCT
TAATATCTTCTCAATGTTGGAAAATTGAAGCTGAAAATATGAGATATTTT
TTTATATTGATTTTATTTATAATAATTTTATTATTATTTTTCCATTTTAG
ATCAAAACAGACCTGGAAGCATATTATGGGCTAACTCCAACTGAATTAGG
ATGGCTGGATACTGCATTTTTATTACCCTATGCTTTTGTAGCTGTAAGTT
CAGTGATTTAATTTGTTTTTCATATTTTATCTTTCTAGTATTACTGGCCA
CTTAGAAATGATAACTTATAATCTTTGAGAAAAATAAATATTTGTGTTGG
ATAAATTTAAAAATGTTATTATTAAACGTTTTCTTCCACCCTGCTTGGTT
GACTAATTCTTTTTTATTTCATTTCAGATAATGTTTGGTAATTTAGGTGA
TAAATATGGCAATCGTAATATTTTAGTTGTCAGTTTGTTAGCAATGTCAT
TCTCCATGGTGAGTACATAAAGAAGATTCTCTTCAATTTACTTTCCTTTC
CTCTCACTCAACCACTGAAAATAATTTGTGAATTTTATTCAAAAACATCT
TTAAGCAGGAGTTTTTTTATAGTTTTTTAAAAAATTCCAAGAAAACTCAA
AAGATCTCACATCGACCACAGACAAAATATGTTTTTGTACAGGCTTTTTT
TTTGATTTTTTGAATATTTTATCAGCCATTTTTTAAATATCAGGTTAATG
GTTCTTATTTGAATTACAGTCTTGTTCTATGTTGCTGAGTACCAACTAAC
GACTAAGACGAGTTCTTATTGAGATTCAGAGGAGTTTATCAGTTTGAAGA
CTGTTGAAGGATTTATATTACACATTAGAAAATGTTTTTCTAAAGCAAAT
GACTGCTAATTGGCATAATGGCATTATGATGGATACATTACTCGCCCTTT
ACGTATGGTATGGCTATATATAGTTTCTTTAATAATATTTTTAGGGAAGT
TTTGGATTTTGGGATTCACCCAAAGTGTTTGCGGTTTTACTTTTCATAAA
TGGAGGTGCTCAGGTAAGAGATGAAATTTCTTTTCCTTTAAATTGATTCA
AATGATTCGTCATGTTTGGGGCAGTGTATGATGCAATGATATACCACTAT
TTGTTGTACCCTTGATCCCTTGGAATTTTTTATATGCTCAGGCATCACAG
AATCTGGTTAAAATGGTGAAGAACTTTTAGGGGCATGAAAAAGTAATACA
TCTGTTGATGAAGCCCAAAATCCACTTTCCCAATACAAAATGTATGACAA
CAACTATGTGCAGTTAAATTGCCAGCTTTTTGTTTTTATTAAGTTGTGCA
TCACTACAATGTCTTCTTAAGTATTTCTCCCAGTCAAACAATGTAAAAGT
GATATTTTTTATCTCTGGGGCTTTAGTAGACCTAAATGGTATCATATATG
TTAGGCTTTGTGTTTATTATAAATCAAATAGAGTAGAGTTTTAACTCTTA
GTTTTAACGCTAGACTTAAGACTTAGGACCTTAGCATCTGAGGATCCAAA
AGTTCAAAAATGGTCCAGTAAGGCTCAGAATATAGCCTGGAAGTCTGCCA
ACCCCTCCCAAATTGAAATATTCGATTAAGTGAAAGAGATAGCCCAAAAT
CTTTTTCGCCTGAACTTTAAATCTCGAAAAACGTCAAAATAACCGGAATT
CTCAATATATTTCTTGAAAGATTGTAGGTGCAAAATGGGGTGGTGTCAAC
CTGCAAGTAGTTAAATGCACTTAGCACTTCGGGGTACTAACTGCTAAGGG
GTGGCGGGTGTGCTCTCAAATTTTTGAATTTGCATTTAGTCATCATGATG
TCTAGTACCAACTGCATGACCCCCCCCCCTGTTTCCCAGGTTGATTGTGG
TCACATAAATCTCTTGTTTGTTTAGGCGCAACTTTATTGCAATATAGCAC
GGTTTTTGACATCCTGGTTTGATTCATCACAGAAGACTACCATGTTCGGC
ATGTGGGGCACGGCACCCTTTGCTGGTGGCATCATTGGAACAGCGGTAGC
AGTAAGTAATTTATTGTTTTGTAACCTGGGAATATTCTTAACTTTTGGAG
CTAGAATAACGTTCTCATTTTACATTGACCAGTGGGAAGTCGTTTTTTAA
AGTGCAGTCGGTCTTGATTACCTATGACCATGAAATGATGTATTAATGTA
TAACCTGGGAATTTTCTTAACTTCTCAGTACTTTAGGCGTACAAACTTTC
GCAAGCAGAAACTTTCGCGAGGATGAAATTCGCGAAATTCACAACATTTA
CTTTCGCGAATTTAACGGAAAAACATTTTTCGCGAGCATAAACTTTTGCA
AATCAAGACGTAAAATTGAGAATTTTCACATGAAAAAATGGCTTAGATTG
ACGAATACCTCTTGGATTGGCTTGCAATATTTGTCCTTTGACTTATTAGT
CTTTTAGCAGGCTATAAAATGCCATAAAAGTTACATTTTATTCAAAGTTT
GAAGTTTTACAGATGTTCTATTTTGTCAAGAATTTTTAAAGACATTTACT
TTCGCGAAAATGGCCAAAATTCGCGAAAATCGCCTGGTAGCTGGTATGGA
ATCGGATAATATCTCTGTGTTTTTCAAAACTTTTTGGGGCAGGCCTTGAT
TTTTTTTAAATGGTAAGATTTGAATAAAATTTGGTGACACATTGGAGCCA
GTGTAAAATATGAAGTTATGCAAAATGATAATGGAATAATAGTACTATTT
TTGTTTTTGACTGGGTACAAGTTGTCTTAACAAGATATAATCAATTAGAA
ACATTTCGTTATACTGATTGATGTTTTNCTAACAAGAAATAATCAATTAG
AAAAATTTCGTTATACTGATTGATGTTTTGTGTGGCTTTTGTGTGTACAT
AATATTTGTAATTGCAATGACTTCAAAATCATTTTGCCTTTATTCTTACA
AAATTTCATTCACTGCTATATGATGATTATCAATAGCAGTCAATAAAGAT
TTGTATCTTATTTAAAACAGCCTTAGTGAGTGAATTTCAGTCTATGCAAT
TTTGTTATATATTTAGGTTGAATTACAAAGACGATTTTCAGGTGATCTGA
AAATGATGTTCCTCGTCCCCTGTGTATGGATTGTGAGTGAATAATTTCAA
TAATTTATGCCATCACTCTCTGTAACTTCAAATTCTTCAAATATGTTTTG
TTTTCATACCCACTAAGGGAATAATTGTCGCTANACATCACTCTCTCTAA
CTTCAAATTCTTCAAATATGTTTTGTTTTCATTCCAAGTAAGGAAAGAAT
TTTCGCTCTCTACTTGATTTATTCACCCAACAACAACTTAAACTACAGAA
CTTAGAACTATGTACAGAGCTATGAAGTTAGAAATTATAGCTGTTAATTC
TTTTATTCTAGTAGATATCTTAGTAATTATGATGATGTCTATCTTATTGT
TTGATGCCTTGAATATCTCGTATTAAATTCGAAGAAAACCTTAAAAAACC
GAAGCCCTAATTTTCCTTACATATTTTACATGTTTTTTAAGGATAAAATG
TGCATAGAGAACAGAATATGAGTTTAAATCTATCAATTGACCATATTGTT
TTTTAGTTCTTTTTGGCCATCGCAACTCATTTCTTTTTGAAATTTCCTCA
TGAATGTGGAATGGAATCACCGGATCCAGGTATGAATATGTCTTTGTTTT
GCTACCGGGTGTGCCACAAATAAGTTACCCTCTTTGATTTGATATTGTAG
GCAGTAGAAAAGAGATTTTTCAAAGATTGTTTCAGAATCACACATAGGAA
AGCCTAACTTAAAATTTGGTGTATTACTTTTTAATTTTACTTCATTGGTT
CAAAAGTTATGTTCAAAAACCTTAAAATGTCAATTTTAAAAAATGTCAAA
AAAGGCGAAAAACAAGAGTAAAAAACCCTTTTGATTCTTTTTACACAGAA
AAACAACAATTGAAGGAGGATGAGCCTACAGCTGTACAACCAAAGAAAGC
TTTGAATTTCATCGAAACCTGGAAGATCAAGTAAACCTCAATCTCTTATT
TTATTTATATGTCCATTAGTTGACGCTATTAATTCGATTTTCAAGAGCAA
TTGGATTTTAATCAACTAAGGGAGCGTATCGAATGTCGTTTATGAGAGTT
TCTTGTTGACGATGATTTTCAATATTATAGGATAATAGAGCGTATCGAAT
AGTATAACATCGAATTAAGGATTGTCAAGTGTACTTCCGTGTCAATCATA
ATTCCTAATTGTAGGAGTAGTGTCTAAATGTTTTTTTTTTTTTACATTAT
TGTAAAGTACATAAGAATAAGAATAACGCTTTAAGGTTAATTATTTAAAG
GACAATTCAATTTTTCTTTCGATTGCCTGTGACACGTTTATCTTGATTAT
CAAAAAATTTGATCTCGTTCGATTTTCCTCTCCATTATCATTTATAAACC
ATCATCTTTTTCATTCAGGATGGTACCCGAATTATGTTGGAGTATGTTTG
GTGCAAAATTAGTTCGATATTGTTTGTACATGTGGCTACCAATGTACCTG
GCTAAAGCGGTGAGCATATACAGGAATAAAGTGTATTCAATCAAGTTATT
TAAGTTTTGCGTCATGAAAATATTCTCATAATATAGAGAAGAAGTTTGAC
TCCACGCTGACAAAATCAACAAAAGAATTCCTCAATACGTTAAAATGATG
TCTTTTAAATTCGCTTTAAACCCTACTATAGTTTATATAAAGCACTCAGC
CTAATTTCTCGCAAGATTAACTTTCGAATTGAATCAATCCCGAACGAAAG
GTTGTCGTTTAAAGGTTGTCGCTTTAAAAGGCTGTCACTATTCATGATTA
TGCACCACTGGAGAGTCTTCTGAGATATTTCAAAATTTTCCACCCAATAC
AATAGAAAAAGTGACGTATTGGTTGGAACAAAAACAGAAAAGTTGCATAA
TTTCGTGAAGTCATTGCAGTGGTGCGTGCATATCATGAATAAAGGTTGTA
GCCGATAAGTATCTTAAAACTGAAACTTCGTGTTGTTTTTTTCAGTTGAA
ATATGACAAAGGTTATGCTGGTATGTTTAGTACGACGTTTGAAATTGGAG
GTGTATTTGGATCATTTTGTAATGGATTTTATATCAATAGGTACGTTAAA
AAAGGTTTATTCTTCTCCTCTTACAGCGATAAAGATTGCTTAGAGCGATA
TTGTATTACAGTTGACTTTAAGCACAACATCAAGTTTCACGATTTCATGA
GCCTGTTTAATGCTAAATTTTAATTGACTTTTTTTCAATTCCCTCTTTTG
CCCTAATTCTGCTGTATTAGACTCCTTTTCGAAAATATCCACCGAGGATA
TTCCAACTCCCTTGCTTATTAAGTTTTTGAGATTTTGTCCAATACCCCCA
ACCCCCCCCACTTATTGCAAATCCCCCGGCTATTAGGTACCTGAGAGTAA
CTGACTTAATTGACTTAGCAGCATAGATCTATCCACCCCTTGTGACTCTC
CTGACAAACTCTGCCCATTTCAGATGGTCTTTTGTGATGTGTTCTGTAGT
GAGGGGTGGTAATATTGTGTCAGCTTTGATTTGATCAGATTTGATCCATG
GTAAACTCGACCCAATCAAACCTTATTTTGGTGTTTAGCGTGTATCATAT
TCTTTCTTTCTCTCAACAGATTAATGGGAGGTCGAAGCTATCTTGGTGTT
TTCGTCGCATTCGCTACAAGCGGTCTATCACTCTATCTCTTCGAACTCAC
AAGCACTTGGTCTGTTTTCTTTAATTTCATCTTCCTTTTCATGGCTGGTG
CTGCAAATTGCGGACCAGATCTTGTCGTTTCTGGTTCCCTAGCAACAGAG
GTTGCCAAGGCAGCAAACGCAGAATCAGCCGTTGCTGGGCTTGTAAATGG
TACGTACAGTTCTAACTTGTTTGATGTTAACTTCCATTTTGATAGACTAA
CATTTTTTAGAAGAATATGTCGAAGTAGGAATTTAAATGCAAGTTAATAA
AAGTTTCTCGTTTTAATTACAGTCGTCTCACACTAATTCGAACCTTTATT
TTTCGAATCTGTAATTCGAACTAAAATATTTGTTCCCTCAGCCTGAAAAT
TAGTTAAATTACTTTCGCTGTAATTCGATACTTCTCTAGTTAGTAGAAAA
TCTTTGGTCTCATGAAGATCGAACTAGAGAGAGTCATTTGTACTTCAAAA
TTAGAAAGCGTAGAAAGCGAAACATTTTTTTAAACTAAATGTAATCAAAG
AACCTTAAGCTCTTTTTTAGACGGCTGACTTTTTGCCCTGCCTATTACAA
TTGTTTGAGTAGGCAAACAGTGGGCGCAAAGTTGGATTTAAAATTTCTGC
TTGAAGAGGGTTGAAAGAAGAGATTGCATTGACGTCAAAAGAGGGCAATG
TATTTACTTTAAACAGCCAACTTTATGTCCACTTTAATTAACAATTAGAA
TAGGCAGGGTGAAAAGTGGGCCGTCTGAACTAGACCTTAAGGTTTGTACC
GACCTTTTGGATCAGATCCACAATATATTCATTTTTTTCTTTTTTTTTCT
TTTCTAGGTTTTGGTAGCCTGGGGACTATAATAGAAGGACCTTTCATCGC
ATTTGTAATGACTCAATTTGGATGGAGTGGTGCATTCTATTCAATGGTGT
TTTTATCACTTGGCGCCTCTCTGGCGGTCGGGAAAGCAGCCTTGGCAGAA
TATCGAAAATGATCTTTAACTTTAATATGTACAATTTCTATGAATACTCG
TTAAGTTTAGAAATAAAAGGGATAATCAGATGGTTTGAGATGTTTGGCCT
GCAGAAACCTTCTTTTGTTGTAAAAGTAAAAGGGATAATCAGATGGTTTG
AGATGTTTGGCCTGCAGAAACCTTCTTTCGTTGTAAAAGGGATAATCAGA
TGGTTTGAGATGTTTGGCCTGCAGAANN

Coding sequence (CDS) from alignment at sc0000052:407658..415185-

>TCONS_00005344 ID=TCONS_00005344|Name=TCONS_00005344|organism=Clytia hemisphaerica|type=CDS|length=1272bp|location=Sequence derived from alignment at sc0000052:407658..415185- (Clytia hemisphaerica)
ATGCTAGAATTATTAAAAAATATGGCTTTAAATAGAGGACAAATAATTGT
GTTTGGAATGACATGGGTTATCTATGCATCGTCATATCTGCTGCGTAAAC
CTTTAGGAGTGATCAAAACAGACCTGGAAGCATATTATGGGCTAACTCCA
ACTGAATTAGGATGGCTGGATACTGCATTTTTATTACCCTATGCTTTTGT
AGCTATAATGTTTGGTAATTTAGGTGATAAATATGGCAATCGTAATATTT
TAGTTGTCAGTTTGTTAGCAATGTCATTCTCCATGGGAAGTTTTGGATTT
TGGGATTCACCCAAAGTGTTTGCGGTTTTACTTTTCATAAATGGAGGTGC
TCAGGCGCAACTTTATTGCAATATAGCACGGTTTTTGACATCCTGGTTTG
ATTCATCACAGAAGACTACCATGTTCGGCATGTGGGGCACGGCACCCTTT
GCTGGTGGCATCATTGGAACAGCGGTAGCAGTTGAATTACAAAGACGATT
TTCAGGTGATCTGAAAATGATGTTCCTCGTCCCCTGTGTATGGATTTTCT
TTTTGGCCATCGCAACTCATTTCTTTTTGAAATTTCCTCATGAATGTGGA
ATGGAATCACCGGATCCAGAAAAACAACAATTGAAGGAGGATGAGCCTAC
AGCTGTACAACCAAAGAAAGCTTTGAATTTCATCGAAACCTGGAAGATCA
AGATGGTACCCGAATTATGTTGGAGTATGTTTGGTGCAAAATTAGTTCGA
TATTGTTTGTACATGTGGCTACCAATGTACCTGGCTAAAGCGTTGAAATA
TGACAAAGGTTATGCTGGTATGTTTAGTACGACGTTTGAAATTGGAGGTG
TATTTGGATCATTTTGTAATGGATTTTATATCAATAGATTAATGGGAGGT
CGAAGCTATCTTGGTGTTTTCGTCGCATTCGCTACAAGCGGTCTATCACT
CTATCTCTTCGAACTCACAAGCACTTGGTCTGTTTTCTTTAATTTCATCT
TCCTTTTCATGGCTGGTGCTGCAAATTGCGGACCAGATCTTGTCGTTTCT
GGTTCCCTAGCAACAGAGGTTGCCAAGGCAGCAAACGCAGAATCAGCCGT
TGCTGGGCTTGTAAATGGTTTTGGTAGCCTGGGGACTATAATAGAAGGAC
CTTTCATCGCATTTGTAATGACTCAATTTGGATGGAGTGGTGCATTCTAT
TCAATGGTGTTTTTATCACTTGGCGCCTCTCTGGCGGTCGGGAAAGCAGC
CTTGGCAGAATATCGAAAATGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003037	XLOC_003037	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005344-protein	TCONS_00005344-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000052	supercontig	sc0000052:407658..415185 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
12.365	10.311	2.42258	0.771665	28.0151	22.297	41.4221	45.0373	18.5542	25.2936	20.6437	15.1941	25.8454	18.9535	11.994	14.9333	22.0385	23.3354	14.7575	26.319	19.821	21.3306	18.8272	24.7413	37.984	38.4294	21.7649	20.6432	16.8721	15.7833

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR011701	MFS
IPR000849	Sugar_P_transporter
IPR020846	MFS_dom

Vocabulary: **Biological Process**
Term	Definition
GO:0055085	transmembrane transport
GO:0006810	transport

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

Vocabulary: **Molecular Function**
Term	Definition
GO:0005215	transporter activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
biological_process	GO:0006810	transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0005215	transporter activity

Blast

[Close]

BLAST of TCONS_00005344 vs. Swiss-Prot (Human)
Match: G6PT3 (Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapiens GN=SLC37A2 PE=2 SV=2)

HSP 1 Score: 91.6633 bits (226), Expect = 1.623e-19
Identity = 105/471 (22.29%), Postives = 197/471 (41.83%), Query Frame = 1

Query:  181 RGQIIVFGMTWVIYASSYLLRKPLGVIKTDL-----EAYYGLTPTE---------------------LGWLDTAFLLPYAFVAIMFGNLGDKYGNRNILVVSLLAMSFSMGSFG---FWDSPKV--FAVLLFINGGAQAQLYCNIARFLTSWFDSSQKTTMFGMWGTAPFAGGIIGTAVAVELQRRFSGDLKMMFLVPCVWIFFLAIATHFFL-KFPHECGMESP----DPEKQQLKEDEP-------------TAVQPKK-------ALNFIETWKIKMVPELCWSMFGAKLVRYCLYMWLPMYLAKALKYDKGYAGMFSTTFEIGGVFGSFCNGFYINRLMGGRSYLGVFVAFATSGLSLYLFELTSTWSVFFNFIFLFMAGAANCGPDLVVSGSLXXXXXXXXXXXXXXXGL------VNGFGSLGTIIEGPFIAFVMTQFGWSGAFYSMVFLSLGASLAVGKAALAE 1407
            RG I++  +T++IYA  ++ RKP+ ++K+ L     E    +  T                      LG +D AFL+ YA    + G  G++   R  L   +L        FG   FW+  ++  F V+   NG  Q   + ++   + +WF   ++  + G+W +    G I+G+ +A       +G   + F+VP +    + + T  FL + P +     P    +P + Q   ++P             T  +  K       A++F    +I  V E    +  AKLV Y    WLP+Y+A    +    AG  ST F++GG+ G    G   +   G  +   V +  A     ++L+       +  + + L + G    GP  +++ +++ ++    + +     L      ++G GS+G  + GP +A +++  GW+  FY ++   + A L + +    E
Sbjct:   22 RGLILL--LTFLIYACYHMSRKPISIVKSRLHQNCSEQIKPINDTHSLNDTMWCSWAPFDKDNYKELLGGVDNAFLIAYAIGMFISGVFGERLPLRYYLSAGMLLSGLFTSLFGLGYFWNIHELWYFVVIQVCNGLVQTTGWPSVVTCVGNWFGKGKRGFIMGIWNSHTSVGNILGSLIA---GIWVNGQWGLSFIVPGIITAVMGVITFLFLIEHPEDVDCAPPQHHGEPAENQDNPEDPGNSPCSIRESGLETVAKCSKGPCEEPAAISFFGALRIPGVVEFSLCLLFAKLVSYTFLYWLPLYIANVAHFSAKEAGDLSTLFDVGGIIGGIVAGLVSDYTNGRATTCCVMLILAAP--MMFLYNYIGQDGIASSIVMLIICGGLVNGPYALITTAVSADLGTHKSLKGNAKALSTVTAIIDGTGSIGAAL-GPLLAGLISPTGWNNVFYMLISADVLACLLLCRLVYKE 484

The following BLAST results are available for this feature:

BLAST of TCONS_00005344 vs. Swiss-Prot (Human)

BLAST of TCONS_00005344 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
G6PT3	1.623e-19	22.29	Glucose-6-phosphate exchanger SLC37A2 OS=Homo sapi...	[more]

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TCONS_00005344 (transcript) - C. hemisphaerica