|
Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005364 ID=TCONS_00005364|Name=TCONS_00005364|organism=Clytia hemisphaerica|type=transcript|length=2040bpRun BLAST on NCBI protein sequence of TCONS_00005364-protein >TCONS_00005364-protein ID=TCONS_00005364-protein|Name=TCONS_00005364-protein|organism=Clytia hemisphaerica|type=polypeptide|length=583bp MPKPKLKKTSKRMTCHKRYKIIKKIKEHNKKVKKEDKNASKRKPKDPGIPRun BLAST on NCBI transcript from alignment at sc0000052:681475..710410- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005364 ID=TCONS_00005364|Name=TCONS_00005364|organism=Clytia hemisphaerica|type=transcript|length=28936bp|location=Sequence derived from alignment at sc0000052:681475..710410- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000052:681475..710410- >TCONS_00005364 ID=TCONS_00005364|Name=TCONS_00005364|organism=Clytia hemisphaerica|type=CDS|length=1752bp|location=Sequence derived from alignment at sc0000052:681475..710410- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005364 vs. Swiss-Prot (Human)
Match: GNL3L (Guanine nucleotide-binding protein-like 3-like protein OS=Homo sapiens GN=GNL3L PE=1 SV=1) HSP 1 Score: 361.688 bits (927), Expect = 3.070e-115 Identity = 186/381 (48.82%), Postives = 255/381 (66.93%), Query Frame = 2
Query: 455 RKRKLQDLQKDAEKRAKLFDQKQEIDEQAKELHRGPLELSRRSYYKEFRKVVEASDVIIQVLDARDPLGCRCPQLEEIVMSSGRNKKIVLLLNKVDLVPKEIVQSWLKYLRSEFPTVAFKASTQNQKQKLTQSKVTIEKASKDLLQSSGCIGAGVLLKLLGNYCRNQDIKTSITVGVVGFPNVGKSSVINSLKRSKACNVGNTPGVTKNMQEIQLDQHVKLLDCPGIVMASGSSDTQIILKNVVKIEALDDPVKPVEAILSRCSKEQVMQKYLVPDYSDTMEFLTLFAKRLGKLKKGGIPDTLTAAKVLLQDWNNGKITFYTHPPERE----KEKATIAQYWGAGFDIDAIVKAENDDLNGLADSLGAALVLQAGKPVDMQ 1585
++R ++ +D +R + F+ K+E+ ++ + E +R++YYKEFRKVVE SDVI++VLDARDPLGCRC Q+EE V+ + NKK+VL+LNK+DLVPKE+V+ WL YLR+E PTVAFKASTQ+Q + L + V +++AS+ LL+S C GA L+++LGNYCR +++T I VGVVG PNVGKSS+INSLKRS+AC+VG PG+TK MQE+ LD+ ++LLD PGIV +S+ IL+N V ++ L DPV PVE IL RC+ E++ Y V + T FLT A RLGK KKGG+ AAK +L DW +GKI+FY PP A I + FDI+ +A D + LA L L P++M+
Sbjct: 81 KRRTIESYCQDVLRRQEEFEHKEEVLQELNMFPQLDDEATRKAYYKEFRKVVEYSDVILEVLDARDPLGCRCFQMEEAVLRAQGNKKLVLVLNKIDLVPKEVVEKWLDYLRNELPTVAFKASTQHQVKNLNRCSVPVDQASESLLKSKACFGAENLMRVLGNYCRLGEVRTHIRVGVVGLPNVGKSSLINSLKRSRACSVGAVPGITKFMQEVYLDKFIRLLDAPGIV-PGPNSEVGTILRNCVHVQKLADPVTPVETILQRCNLEEISNYYGVSGFQTTEHFLTAVAHRLGKKKKGGLYSQEQAAKAVLADWVSGKISFYIPPPATHTLPTHLSAEIVKEMTEVFDIEDTEQANEDTMECLATGESDEL-LGDTDPLEME 459 The following BLAST results are available for this feature:
BLAST of TCONS_00005364 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
|
Copyright © 2025, MARIMBA.