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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005473 ID=TCONS_00005473|Name=TCONS_00005473|organism=Clytia hemisphaerica|type=transcript|length=2153bpRun BLAST on NCBI protein sequence of TCONS_00005473-protein >TCONS_00005473-protein ID=TCONS_00005473-protein|Name=TCONS_00005473-protein|organism=Clytia hemisphaerica|type=polypeptide|length=657bp MLDFFTIFSKGGIVLWYFQGTVGDFTNPVNELIKSVVLQERSGSGSFNHNRun BLAST on NCBI transcript from alignment at sc0000053:184118..214148- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005473 ID=TCONS_00005473|Name=TCONS_00005473|organism=Clytia hemisphaerica|type=transcript|length=30031bp|location=Sequence derived from alignment at sc0000053:184118..214148- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000053:184118..214148- >TCONS_00005473 ID=TCONS_00005473|Name=TCONS_00005473|organism=Clytia hemisphaerica|type=CDS|length=1974bp|location=Sequence derived from alignment at sc0000053:184118..214148- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005473 vs. Swiss-Prot (Human)
Match: SRPRA (Signal recognition particle receptor subunit alpha OS=Homo sapiens GN=SRPRA PE=1 SV=2) HSP 1 Score: 605.134 bits (1559), Expect = 0.000e+0 Identity = 343/673 (50.97%), Postives = 441/673 (65.53%), Query Frame = 1
Query: 79 MLDFFTIFSKGGIVLWYFQGTVGDFTNPVNELIKSVVLQERSGSGSFNHNQLAIKYKLDNEFELVFVVGYQNILQLSYIDKFLSDIQLQFRDRYKNRL----ILNDFYGEFDFNETFTNILMENEHSSRVQK-REMKTFETSNKANK-IR-MQRGTLELSNTXXXXXXXXXXXXXGAGTPKSPKGXXXXXXXXXXXXXXXXRPSSPVTEQPQTNGEVVNGTMELTEDQIIEQKRALLMKGMLRKKKPAKPDSKNASPRSDKKKGKTDRRWN-GGNVDAATLDYSSAGNSSASMTNGESDL-VTEKEKLMVGQMEG-DLKSIDVGDDVEDIGYENEDEKKXXXXXXXXXXXXXXXKGLAGQKAITPEAIAPVLEKMKEHLISKNVAADIASKLCNSVSAKLEGKVLGTFTGVASAVRSSMQESLVQILSPKKRVDILRDVMEAKRKGKPYTIVFCGVNGVGKSTNLAKICFWLMENNHRVMIAACDTFRSGAVEQLRTHQCRLKALHPKGEKEPEK------VMLYDKGYGKDAAAVSMEAINLARDLNFDVVLVDTAGRMQDNEPLMRSLAKLIKINEPDLVLFVGEALVGNDGVDQLRKFNQALADHSDVNNPHLIDGIVLTKFDTIDDKVGASISMTYETGQPIVFVGTGQTYTDLRNLNVNAVVKALLKS 2049
MLDFFTIFSKGG+VLW FQG T PVN LI+SV+LQER G+ SF H L +KYKLDN+FELVFVVG+Q IL L+Y+DK + D+ FRD+Y+ + L+ G FDF F +L E E SS+++ MK FE S KA K +R M E K+ KK +K +G+ P + S PV + +EL+++++I +KR ++ R + + +K+ +P+ KK R W GG + LDYS+ TNG + ++E L+ G G L+ +D ++ +N K +++ + G +F KGL G K+++ E + VL+KM++HLI+KNVAADIA +LC SV+ KLEGKV+GTF+ V S V+ ++QESLVQIL P++RVD+LRD+M+A+R+ +PY + FCGVNGVGKSTNLAKI FWL+EN V+IAACDTFR+GAVEQLRTH RL ALHP PEK V L++KGYGKDAA ++MEAI AR+ FDVVLVDTAGRMQDN PLM +LAKLI +N PDLVLFVGEALVGN+ VDQL KFN+ALADHS P LIDGIVLTKFDTIDDKVGA+ISMTY T +PIVFVGTGQTY DLR+LN AVV AL+K+
Sbjct: 1 MLDFFTIFSKGGLVLWCFQGVSDSCTGPVNALIRSVLLQERGGNNSFTHEALTLKYKLDNQFELVFVVGFQKILTLTYVDKLIDDVHRLFRDKYRTEIQQQSALSLLNGTFDFQNDFLRLLREAEESSKIRAPTTMKKFEDSEKAKKPVRSMIETRGEKPKEKAKNSKKKGAKKEGSDGPLAT--------------------SKPVPAEKSGLPVGPENGVELSKEELIRRKREEFIQKHGRGMEKSNKSTKSDAPKEKGKKAP--RVWELGGCANKEVLDYST------PTTNGTPEAALSEDINLIRGTGSGGQLQDLDCSSSDDEGAAQNS--TKPSATKGTLGGMFGMLKGLVGSKSLSREDMESVLDKMRDHLIAKNVAADIAVQLCESVANKLEGKVMGTFSTVTSTVKQALQESLVQILQPQRRVDMLRDIMDAQRRQRPYVVTFCGVNGVGKSTNLAKISFWLLENGFSVLIAACDTFRAGAVEQLRTHTRRLSALHP-----PEKHGGRTMVQLFEKGYGKDAAGIAMEAIAFARNQGFDVVLVDTAGRMQDNAPLMTALAKLITVNTPDLVLFVGEALVGNEAVDQLVKFNRALADHSMAQTPRLIDGIVLTKFDTIDDKVGAAISMTYITSKPIVFVGTGQTYCDLRSLNAKAVVAALMKA 638 The following BLAST results are available for this feature:
BLAST of TCONS_00005473 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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