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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005556 ID=TCONS_00005556|Name=TCONS_00005556|organism=Clytia hemisphaerica|type=transcript|length=1409bp
GAGAAAAGTTTTCGAAGTTTCATGTTTCAATATTTCTACCAGCGTTTGAC
TTgcagagtttggtacaggctgaAGTATTCCAAGAAATTGGTTAATCTGA
AATCGACACCCATTTTTTGCTGTtataaaaagacaaaacaaaagCGATAT
AATACATGTTCATAGTAGATTTTGTGTTCGTGTATAAGGTGAAGAGTGCT
TTGAAAAAACTCGAAAGTGATATTAGTTACTACACGTAAGCGAGTAAAGT
AGTGTTTTTCAATTAATAATGGCAATCTCTAAGAAAGTGGTTTTCATCGG
AAATCCAGGCGTTGGGAAAAGCACTTTGCTAAATTGTTTACTGGGGCGGA
GCGCATTCAAGAGTGGCGTTAACATCGCCACTGGAATTTCATACCAATTG
CAAACAGAAGTTGATGAAGTGAGGGGCGTCACTTTTTGTGACACGCCCGG
TCTAAAAGATGTGGCAATGCGAAACAAAGCAGCTATTGCAATCACCGAGG
CGTTGAAACAAGGTGGAGAGTTTCTCGTTACGTTTACCATCACTTTGGAA
GCCGGAAGAGTCAAACCAGAAGATATTTCCACCATCGAAGCGGTTGTCAA
GGCAGCTCCTGAAATTAGGGACTTTGGTTTAGTGATCAATAAACTGTCGA
AGAATCTTTACAATCGTCTCTCATCGAACGCTTCTCAAAAAGAAAGTGTC
ATCAAAGAGGTCACAAAATCCTTGACATGCAATCAACCCTCTGTTCTCCT
TCTACAAAACAACGATAATCTTGAAGGTGAAGAAAACGCTCACACTAATT
TACCATCTTTGTCTGATTTTGTGTTCCGTACCATGAAATCTATCGTTATT
CACACAAACAATGTGCAAGACGTGAACGCTGGTCAACAATACAATGTCGC
TTATCAAAGGGAAATGGCAGCTAAAATGAAGGCTGAAAAACAAGAAACCG
AGCGCCTTAGAAAAGAGAGAGAAGAGGAGGCTAGGAGACAGGCTAGACAG
CGTCAAGAAGCGGAGGATAGAAGGAGACGACAAGAGGCTGAACGACAACA
ACGCGAATGGGAATATGAACAACAACGGAGGAGGGAGCGTGAACGAGAAC
AAGAAAGATTACAACGTGAAAGAGAGGCTAGGCAAGCAGCAGAACAAAGA
AGGCGTCAAGAGGAGATAGAAAGAGAAAAAGTGAGACAACGACAGGAAGA
AGAAAGGCGTCAACGCCAACTAACATACCAACGCCAGCAAGCAGCCGCCC
GCGCACGTGATGACGGCTGTATTATATTGTAGTATGAAATAAgaataaat
cttttttgttaaaaagacTTTTTGTCACCCATATACTTGTATACACCTTA
TTTACTCAAGGTAAGATGGAACATTTAATGTTTAAGCCCAAAATTGAATG
ACTTTTAGC Run BLAST on NCBI protein sequence of TCONS_00005556-protein >TCONS_00005556-protein ID=TCONS_00005556-protein|Name=TCONS_00005556-protein|organism=Clytia hemisphaerica|type=polypeptide|length=337bp
MAISKKVVFIGNPGVGKSTLLNCLLGRSAFKSGVNIATGISYQLQTEVDE
VRGVTFCDTPGLKDVAMRNKAAIAITEALKQGGEFLVTFTITLEAGRVKP
EDISTIEAVVKAAPEIRDFGLVINKLSKNLYNRLSSNASQKESVIKEVTK
SLTCNQPSVLLLQNNDNLEGEENAHTNLPSLSDFVFRTMKSIVIHTNNVQ
DVNAGQQYNVAYQREMAAKMKAEKQETERLRKEREEEARRQARQRQEAED
RRRRQEAERQQREWEYEQQRRREREREQERLQREREARQAAEQRRRQEEI
EREKVRQRQEEERRQRQLTYQRQQAAARARDDGCIIL Run BLAST on NCBI transcript from alignment at sc0000054:163113..167515+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005556 ID=TCONS_00005556|Name=TCONS_00005556|organism=Clytia hemisphaerica|type=transcript|length=4403bp|location=Sequence derived from alignment at sc0000054:163113..167515+ (Clytia hemisphaerica)
GAGAAAAGTTTTCGAAGTTTCATGTTTCAATATTTCTACCAGCGTTTGAC
TTgcagagtttggtacaggctgaAGTATTCCAAGAAATTGGTTAATCTGA
AATCGACACCCATTTTTTGCTGTtataaaaagacaaaacaaaagCGATAT
AATACATGTTCATAGTAGATTTTGTGTTCGTGTATAAGGTGAAGAGTGCT
TTGAAAAAACTCGAAAGTGATATTAGTTACTACACGTAAGCGAGTAAAGT
AGTGTTTTTCAATTAATAATGGCAATCTCTAAGAAAGTGGGTAAGTTTGT
TGGAGTATATAAACTTTTATCTGTTTCAACTCGAAACATGCTTTggaacc
ccggggggggggcactgggtttgcggacggGTTTGGAACTTTTCCTTCGA
TAAGTTCATTATATTTTTAGCAGGatataattttctttgttttatctttA
ATCCAACATGTCGAGGTCTAATCGGAGACACTCGAATTTCAATTTCGCAA
AGTTTTCGTTTGATAGGGCGAAATTAGAAATTGGGGCCTTCACTCACTTC
TTGGGCCTTCTTTTCggtagattcgctggattgtaggattgggattcaag
gattcggattcggattcaggattcgtaaaaagctttgtaaaagaaaattg
aaaaaagatattgacttcaaaccaaaagatcttgaaagattacataacat
agagcagttcttaacaaaaattgatataaaaatgggcgtggccttgacgc
taattagggaaattcccctttctaggattcaaatttccagccCATTGCAt
actttggctagttctcagtcccctcgttgaggTTAAATCAATtcctaaac
acctgatcttatgaccgggacatgtcaatgattaatcgtggacaaaattt
attgacaaaaagggcgtggcctcgatacTAATANNaaagggcgtggcctc
gatgctaattagggaaattcccttttttaggattcaaaacacaaaaattg
caaagtttggcaaagtttggctagttctcagtcctctcgctgaatttgga
tcaatttctaaacacctgatcttatgaccggggaatttccctaattagca
tcgaggccacgccctttttgtcaatgaattttgtccacgattataatcat
tgacatgtccggtcataagatcaggtgtttagaaattgatccaaattcaa
cgagaggactgagaactagccaaactttgcaattttcgtgttttgaatcc
taaaaaagggaatttacCTAATTAGCAACGAGGCCAccccctttttgtca
ataaattttgtccacgattaatcattgacatgtccggtcataagatcagg
tgtttagaaattgatccaaattcaacgagaggactgagaactagccaaac
tttgcaatttttgtgtttttgaatcCTTAAAAacgggaatttccctaatt
agcatcgaggccacgccctttttgtcaataaattttgttcacaattaatc
attgacatgtccggtcataagatcaggtgtttagaaattgattcaaattc
aacgaggggactgagaactagccagactttgccaaactttgcaatttttg
tgttttgaatcctaattaagggaatttccctaattagcatcgaggccacg
ccctttttgtcaataaattttgtccacaattaatcattgacatgtccggt
cataagatcaggtgtttagaaattgatccaaattcaacgagggatctgag
aactagccaaactttgccaaacttttcaattttcgtgttttgagtcctaa
ataagggaatttccctaattagcatcgaggccacgccctttttgtcaata
aattttgtccacgattaatcattgacatgtccggtcatggtaagatcagg
tgtttaggaATTGATTTAAcctcaacgagggaactgagaactagccaaag
ttTGCAATGggctggaaatttgaatcctaaaGAGggaaatttccctaatt
agcgtcaaggccacgcccatttttatatcaatttttgtcaagaactgctc
tatgttatgtaatctttcaagatcttttggtttgaagtcaatatcttttt
tcaatttctttttacaaagctttttacgaatcctgaatccgaatccgaat
ccttgaatcccaatcctacaatccagcgaatctaccCTTCTTTTCTTGAG
GAAATATGTTCTAAAGATGGTCAATTCTTTCAAACAGAAGATGAGATTGA
ATTCTCAATGAATCATTTTCTAAGGTCTAAGATTTATAACAGTTGACACA
GGGACAattaatgtttctttttttttttggaatcagcAAAGTTCAAAGCA
TACTCGTGTCACATAGATTATGTCCCTAAATGCAATAAATTCAgcgcaaa
aaaaaaactgaggGACTGcatgacgtcataaaacttaaaaccttaaaggt
tttgttttgaagtacaattcaacatttttttaaaagagcCAGTAGATTTT
TTATGAGGCTCACAtttgttcttattctgttcttatTCATAGGTTAAAAC
TGAGGTATTCAAGGATTTATAcctaatttttacaaatttgacccctaaat
tgcttgaaattgagtaattccaggctcagcattgttcttaaacagttctt
atttttgagcaatttttagcctcattgttcttatgaaattgttcttaaac
tgttcttatttttgggcaattttgagcctcactgttcttatgaaattgtt
cttataaaaggaaaaagtgtgtaaatatgaaatttggtcCTTTGACAGGT
ATTCGGGATccctaattttcgaaaaaaaaatgacgAAGACAGCAGAAATC
GaacattttgctaaaatttcttgaaagaaTGCAAGAAAATAATTAAcagt
gatttttgaatttctacatcctaatacgcttcttttgaaaTGTAAATGAC
CAAAGACCCTCAGCTTTCTGCGCCAAACTTATGTCCTTTTTGGGATATGT
CATAAGTAaaccaaagtaaaaagtttttcatccttttttgagAATTCCCT
CTTAAAAATCATAGcgtatgaaatatttttacagcaGTAGCCAACTTATG
AACATTAAATTGTTGAGATACGAAAAAAGTAAGAGTTAGTACACTTGTGA
AATACTTCAATTGCGACCCATACAACTTGTTTTAGTCAGTTTTTTTTCAA
CCTTATTCTTCATCACTTTGTTCAGTTTTTTTCCATGTTCGTCACAACAT
TCTATATTAACTGTTCTCCTTTTTTCCTTGCTAGTTTTCATCGGAAATCC
AGGCGTTGGGAAAAGCACTTTGCTAAATTGTTTACTGGGGCGGAGCGCAT
TCAAGAGTGGCGTTAACATCGCCACTGGAATTTCATACCAATTGCAAACA
GAAGTTGATGAAGTGAGGGGCGTCACTTTTTGTGACACGCCCGGTCTAAA
AGATGTGGCAATGCGAAACAAAGCAGCTATTGCAATCACCGAGGCGTTGA
AACAAGGTGGAGAGTTTCTCGTTACGTTTACCATCACTTTGGAAGCCGGA
AGAGTCAAACCAGAAGATATTTCCACCATCGAAGCGGTTGTCAAGGCAGC
TCCTGAAATTAGGGACTTTGGTTTAGTGATCAATAAACTGTCGAAGAATC
TTTACAATCGTCTCTCATCGAACGCTTCTCAAAAAGAAAGTGTCATCAAA
GAGGTCACAAAATCCTTGACATGCAATCAACCCTCTGTTCTCCTTCTACA
AAACAACGATAATCTTGAAGGTGAAGAAAACGCTCACACTAATTTACCAT
CTTTGTCTGATTTTGTGTTCCGTACCATGAAATCTATCGTTATTCACACA
AACAATGTGCAAGACGTGAACGCTGGTCAACAATACAATGTCGCTTATCA
AAGGGAAATGGCAGCTAAAATGAAGGCTGAAAAACAAGAAACCGAGCGCC
TTAGAAAAGAGAGAGAAGAGGAGGCTAGGAGACAGGCTAGACAGCGTCAA
GAAGCGGAGGATAGAAGGAGACGACAAGAGGCTGAACGACAACAACGCGA
ATGGGAATATGAACAACAACGGAGGAGGGAGCGTGAACGAGAACAAGAAA
GATTACAACGTGAAAGAGAGGCTAGGCAAGCAGCAGAACAAAGAAGGCGT
CAAGAGGAGATAGAAAGAGAAAAAGTGAGACAACGACAGGAAGAAGAAAG
GCGTCAACGCCAACTAACATACCAACGCCAGCAAGCAGCCGCCCGCGCAC
GTGATGACGGCTGTATTATATTGTAGTATGAAATAAgaataaatcttttt
tgttaaaaagacTTTTTGTCACCCATATACTTGTATACACCTTATTTACT
CAAGGTAAGATGGAACATTTAATGTTTAAGCCCAAAATTGAATGACTTTT
AGC Coding sequence (CDS) from alignment at sc0000054:163113..167515+ >TCONS_00005556 ID=TCONS_00005556|Name=TCONS_00005556|organism=Clytia hemisphaerica|type=CDS|length=2028bp|location=Sequence derived from alignment at sc0000054:163113..167515+ (Clytia hemisphaerica)
ATGGCAATCTCTAAGAAAGTGGTTTTCATCGGAAATCCAGGCGTTGGGAA
AAGCACTTTGCTAAATTGTTTACTGGGGCGGAGCGCATTCAAGAGTGGCG
TTAACATCGCCACTGGAATTTCATACCAATTGCAAACAGAAGTTGATGAA
GTGAGGGGCGTCACTTTTTGTGACACGCCCGGTCTAAAAGATGTGGCAAT
GCGAAACAAAGCAGCTATTGCAATCACCGAGGCGTTGAAACAAGGTGGAG
AGTTTCTCGTTACGTTTACCATCACTTTGGAAGCCGGAAGAGTCAAACCA
GAAGATATTTCCACCATCGAAGCGGTTGTCAAGGCAGCTCCTGAAATTAG
GGACTTTGGTTTAGTGATCAATAAACTGTCGAAGAATCTTTACAATCGTC
TCTCATCGAACGCTTCTCAAAAAGAAAGTGTCATCAAAGAGGTCACAAAA
TCCTTGACATGCAATCAACCCTCTGTTCTCCTTCTACAAAACAACGATAA
TCTTGAAGGTGAAGAAAACGCTCACACTAATTTACCATCTTTGTCTGATT
TTGTGTTCCGTACCATGAAATCTATCGTTATTCACACAAACAATGTGCAA
GACGTGAACGCTGGTCAACAATACAATGTCGCTTATCAAAGGGAAATGGC
AGCTAAAATGAAGGCTGAAAAACAAGAAACCGAGCGCCTTAGAAAAGAGA
GAGAAGAGGAGGCTAGGAGACAGGCTAGACAGCGTCAAGAAGCGGAGGAT
AGAAGGAGACGACAAGAGGCTGAACGACAACAACGCGAATGGGAATATGA
ACAACAACGGAGGAGGGAGCGTGAACGAGAACAAGAAAGATTACAACGTG
AAAGAGAGGCTAGGCAAGCAGCAGAACAAAGAAGGCGTCAAGAGGAGATA
GAAAGAGAAAAAGTGAGACAACGACAGGAAGAAGAAAGGCGTCAACGCCA
ACTAACATACCAACGCCAGCAAGCAGCCGCCCGCGCACGTGATGACGGCT
GTATTATATTGTAGATGGCAATCTCTAAGAAAGTGGTTTTCATCGGAAAT
CCAGGCGTTGGGAAAAGCACTTTGCTAAATTGTTTACTGGGGCGGAGCGC
ATTCAAGAGTGGCGTTAACATCGCCACTGGAATTTCATACCAATTGCAAA
CAGAAGTTGATGAAGTGAGGGGCGTCACTTTTTGTGACACGCCCGGTCTA
AAAGATGTGGCAATGCGAAACAAAGCAGCTATTGCAATCACCGAGGCGTT
GAAACAAGGTGGAGAGTTTCTCGTTACGTTTACCATCACTTTGGAAGCCG
GAAGAGTCAAACCAGAAGATATTTCCACCATCGAAGCGGTTGTCAAGGCA
GCTCCTGAAATTAGGGACTTTGGTTTAGTGATCAATAAACTGTCGAAGAA
TCTTTACAATCGTCTCTCATCGAACGCTTCTCAAAAAGAAAGTGTCATCA
AAGAGGTCACAAAATCCTTGACATGCAATCAACCCTCTGTTCTCCTTCTA
CAAAACAACGATAATCTTGAAGGTGAAGAAAACGCTCACACTAATTTACC
ATCTTTGTCTGATTTTGTGTTCCGTACCATGAAATCTATCGTTATTCACA
CAAACAATGTGCAAGACGTGAACGCTGGTCAACAATACAATGTCGCTTAT
CAAAGGGAAATGGCAGCTAAAATGAAGGCTGAAAAACAAGAAACCGAGCG
CCTTAGAAAAGAGAGAGAAGAGGAGGCTAGGAGACAGGCTAGACAGCGTC
AAGAAGCGGAGGATAGAAGGAGACGACAAGAGGCTGAACGACAACAACGC
GAATGGGAATATGAACAACAACGGAGGAGGGAGCGTGAACGAGAACAAGA
AAGATTACAACGTGAAAGAGAGGCTAGGCAAGCAGCAGAACAAAGAAGGC
GTCAAGAGGAGATAGAAAGAGAAAAAGTGAGACAACGACAGGAAGAAGAA
AGGCGTCAACGCCAACTAACATACCAACGCCAGCAAGCAGCCGCCCGCGC
ACGTGATGACGGCTGTATTATATTGTAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005556-exon-sc0000054-1491911889:163113..163402 | TCONS_00005556-exon-sc0000054-1491911889:163113..163402 | Clytia hemisphaerica | exon |
| TCONS_00005556-exon-sc0000054-1510915933:163113..163402 | TCONS_00005556-exon-sc0000054-1510915933:163113..163402 | Clytia hemisphaerica | exon |
| TCONS_00005556-exon-sc0000054-1575043694:163113..163402 | TCONS_00005556-exon-sc0000054-1575043694:163113..163402 | Clytia hemisphaerica | exon |
| TCONS_00005556-exon-sc0000054-1491911889:166397..167515 | TCONS_00005556-exon-sc0000054-1491911889:166397..167515 | Clytia hemisphaerica | exon |
| TCONS_00005556-exon-sc0000054-1510915933:166397..167515 | TCONS_00005556-exon-sc0000054-1510915933:166397..167515 | Clytia hemisphaerica | exon |
| TCONS_00005556-exon-sc0000054-1575043694:166397..167515 | TCONS_00005556-exon-sc0000054-1575043694:166397..167515 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:163113..167515 + |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005525 | GTP binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005525 |
GTP binding |
Blast
The following BLAST results are available for this feature:
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