TCONS_00005587 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005587
Unique NameTCONS_00005587
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2418

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005587 ID=TCONS_00005587|Name=TCONS_00005587|organism=Clytia hemisphaerica|type=transcript|length=2418bp
ctcctgaccaatcttgctccacatacgtgtcaatccaatacgaaaaagct
tgtgaatgaaaattgatgagtaagcataCTAAATATcaatcttatttaaa
aacaaaacctttaaaagaaaAACCATTTATAACTAAAGTAAGAAGGAAAA
AAGTATTTGAGCTTATTTTATTAGTAATCTAAAATAAGGCACCACTAAAA
ATTTCAGACCCAAGAATAAATATCTTATTGTTATTAATCGATTTAAGAGG
aaaaaaaccataaaaataGAAATGGCCACCATACCAGACAACATCAAAGA
GTTATGGAGCAATGCAGATGCaatatgttttgatgttgatagCACAGTTT
GTACTGGTGAAGCTATTGATGATTTTGCTGCCTTCCTTGGCATTGGTGAT
CAAGTGGCAGAACTcACAAGGCGTGCTATGGGTGAAGGGTTATCATTTCG
ACAATCATTAGATGAGAGGTTGAAGTTGATGAAACCATCAAAGCAACAAC
TCGATGGATTCATTGAAACGCACCCACTTCAACTCACACCGGGTGTCAAG
AAGCTTGTATCAAAACTTCACGAACGAAAGAAGGATGTTTATTTAGTATC
TGGTGGTTTTCGAAGTTTCATAGCACCAGTAGCAAAAAAACTGAACATTC
CCCTTGATAACTTGTTTACTAATATATTCATCTTCAATGACGATGGTTCT
TACGGAGGATTTGACAAAGATCAACCAACGTCATCGTCGGGAGGGAAGAA
AGTTGTCGCTACAAAACTTAAAACAGAAAAAGGATATAAAAGtTTGGTAA
TGATCGGTGACGGGGTAACAGATCTGGAAGCCTATCCACCCGCTGATCTC
TTCATCGGTTTTGGTGGTAATAAAATACGTGAAAATGTTCGGCAGAATTC
TCCATGGTTTGTCACTCAATTTCAAGAACTAATTGATGTTTTGTGATTGG
TAGCTAATGTAGTCATGTGATCTAGTGAATCTAGTGAACTTATGCTCTCG
GGTATCTATTAAGCGTCTCCCCTGCTTTTTAACTTTTAGGGTCTATCCTT
TCCACCTATTCCGCCGTTTATTTTACGGCAATTggaaaaaaagtggaaaa
tttttagaagattttgaaatttcagtcccattctgggtccttttttttgc
aaattttgacaaaatttttaaaaaacaagttccACGTAGAGTCCATTTTT
TGAACCTCAGCttgtatgtatgtctgtctaTATGTCAcctcaaaactttg
gggcaggctggagacttcaaaaatggtccgatttggctgaaatttttcac
acttgTTCCTGGGGTGAATATCTGagagtgattttttttcaaaattttca
tttcacgGGCGTGGTCACAAGGTTTAGCCCAAAAAGAGGCTAAAACTTTT
CTTATATCAAAAATTTCCTGTCGATGTTTAAAATTGGGCCCATGAGTAAT
TTAAAAGATACTTAAATTGAGTccgtgcggttagcacgttcgacaattga
caattttttgtaatttaacgttttttcagaaaaatcttgGGTAAGAATTG
CAATTTCTGTACTTCCTCTTTTTTCATTGGATCTTTCAATTTTGGAAGTG
TACAGCTTTCAGACTGTATTCTCAACCTTATtcgaacatttttgagcttt
tagattcTGAAAGCCTAACGTTAAACCTCTTCTTTCCGAGCGTATTTTAA
AGCACTAAAAAAATTTCCCACGATTTCCTTTTAGTACCAAATATTGTGGC
GGAAATTGTAGaatgattcaaaataaataaacaacacaaaaatttgattt
tttttaaacaaagctTTTCGAGTCTTAACTGCTCATCATcaggttaaaaa
aaaatattggaattgCTTATGAAAAATACGTAACCCATGAACaaatgaat
agaccttttcataaactacgtcacgaacatcacttgtctcgtattcaaac
aattgccatggtgattaaggTCTAtggagacattaaatgatttttttatg
aataggaagtagttttaataaattcCGCTGGGAGTttatcaccatggcaa
taatttcaaaaccaggcaagtgatgtttgtgacgtaatttatgaaaaggt
ctatattgAGTACTTATTGCGTTGGTCAATATGAAAATACCATAGTCTTT
CATCCAATTACTAGTAGGTtatttttctcaactttttttattttaggtag
tttttttcaaattttcaaattttatatatttaatagcaatgataaaattt
caactttctgaaatcattttttgtttttaccttGATTAAACGGTATGGGA
GCTCAATACTTTGTTTTATTGTGTTAGCTGACATTCAAGCTGAAATAATT
CTTTCGTAAAAATATTTACGCCTGTAAATATATGATCAGCTTCTTTTCAA
ATGAAGTACCGATTGCAT
Run BLAST on NCBI

protein sequence of TCONS_00005587-protein

>TCONS_00005587-protein ID=TCONS_00005587-protein|Name=TCONS_00005587-protein|organism=Clytia hemisphaerica|type=polypeptide|length=224bp
MATIPDNIKELWSNADAICFDVDSTVCTGEAIDDFAAFLGIGDQVAELTR
RAMGEGLSFRQSLDERLKLMKPSKQQLDGFIETHPLQLTPGVKKLVSKLH
ERKKDVYLVSGGFRSFIAPVAKKLNIPLDNLFTNIFIFNDDGSYGGFDKD
QPTSSSGGKKVVATKLKTEKGYKSLVMIGDGVTDLEAYPPADLFIGFGGN
KIRENVRQNSPWFVTQFQELIDVL
Run BLAST on NCBI

transcript from alignment at sc0000054:470074..478416+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005587 ID=TCONS_00005587|Name=TCONS_00005587|organism=Clytia hemisphaerica|type=transcript|length=8343bp|location=Sequence derived from alignment at sc0000054:470074..478416+ (Clytia hemisphaerica)
ctcctgaccaatcttgctccacatacgtgtcaatccaatacgaaaaagct
tgtgaatgaaaattgatgagtaagcataCTAAATATcaatcttatttaaa
aacaaaacctttaaaagaaaAACCATTTATAACTAAAGTAAGAAGGAAAA
AAGTATTTGAGCTTATTTTATTAGTAATCTAAAATAAGGCACCACTAAAA
ATTTCAGACCCAAGAATAAATATCTTATTGTTATTAATCGATTTAAGAGG
aaaaaaaccataaaaataGAAATGGCCACCATACCAGACAACATCAAAGA
GTTATGGAGCAATGCAGATGCaatatgttttgatgttgatagCACAGTTT
GTACTGGTGAAGCTATTGATGATTTTGCTGCCTTCCTTGGCATTGGTGAT
CAAGTGGCAGAACTGTAAGTTATATGATAATTAGATGCAataaacatgtt
ttttataagcaagtgactATCctttggtcaggctcgtgtatgatTAAGCT
TTACAAGCATTCAGACATAGcctatgcttattatatgcttatgaattatA
ATGCTTATAATTTATCCCGAGCCCAGCTTTCGTTAAATCTCAGAAAtctt
gtaaacattcgattCAAAAAGTGTTCAGCTTTTGGGAGCAGTGAAATGTG
GCTAGTCTTGGAAggtcttttttttacttgactttttataaacctttttg
aacagaaaaaaatgatgactagaaaaatatttcaggctggcgTATATACT
TATGTTATGAAATATTCAAATCTAAGCCTttttatgcttataagcgtttt
atgcttataaaaaaaacatgcaaaGTACAACAAGAAGGTCTCAATGTCAC
TACGTTTAGGTTTTTTTTAATAGTCGTAATAGTTGTAAAGTTTTGCAGAA
AGAATTGGACAATATAATTATCGAAAAATAAGGACTAGAGTTCAAGCGCG
ATATGGCTTGGAAATCCTTGTATCATGGAGTGAATTATGTAGATTTATTT
CAATGACAAAGATACTATGTGTACTTCTGGtaacatttttagaaatgtta
taTAATGTTCTatatattttcgattttttagcACAAGGCGTGCTATGGGT
GAAGGGTTATCATTTCGACAATCATTAGATGAGAGGTTGAAGTTGATGAA
ACCATCAAAGCAACAAGTAATAATAACAATTTTAATCCATTGATTAAATT
GATTAAACACGGTTATTGCTTCGTAGTACACTTAGNGTTGATGAAACCAT
CAAAGGAACAAGTAATCATAACAATTTTAATCCATTGATTAAATTGATTA
AACACGTTTAttgcttcgtagtacactctgtgcgcattgtctgtttgata
aaaaaattcccgtacgaaGAACTCTGTGATGAAGTATGATTCATAAACAA
caacacttctctcgtcgtctcccctctctcataaacactccatcgcagcg
gtcggtttgaaaaatctaaaatgagaaaagacaatgacaacagaccctct
acggtaatgaattttgaaattagcagTAGATACTGGGCCTGTGTGTTGAC
AAGGGAGTGAGGGACTTCCAAATATATCGGCCATGAAATACCATAATCAT
AATAAAAGTGTTGTTAActatcaaaaatcatttttaaaatcacttttttt
cTATACTTTTTTTATTCCTAGCTCGATGGATTCATTGAAACGCACCCACT
TCAACTCACACCGGGTGTCAAGTAAGATTTcatgaaaatataatttctaC
TACTAGTAGTAGTACTACAAAACTAGGAAAAATGGCTTTCGACTGTTTAA
AAGTAATCTACTTTTCAAACTAAATTTAAAAGTCGACTGCTGTATAAGAT
ATTGCAGTTTTTAATACAAAAGGCCACAAATTTACAAAAGTTACGAACTC
GAAcgggaaatcttttttgttcgagtaacagagagattcgaattagagag
tatcTTGAGAGAGTTTCTCCCTGCGGGAAATAGAAAGATTCGATTAAAGA
AGTTCGACTAAGCGAGAGCTGTATGTATTTTAGTTTTGGCATCTTCATTT
TAGGAAGCTTGTATCAAAACTTCACGAACGAAAGAAGGATGTTTATTTAG
TATCTGGTGGTTTTCGAAGTTTCATAGCACCAGTAGCAAAAAAACTGAAC
ATTCCCCTTGATAACTTGTTTACTAATATATTCATCTTCAATGACGATGG
TAAGATTTGCATATTTTATATTCGAAAATAATACTTGAAATATTGAGAGT
AGATACAATATATAGTATCCACATAGAGTCCTCCAGGGTTCAGGTACCCC
AAAAAACTTAGGTACCTCAATCATTTTggtacccccaaaatttttagaat
tctaaTTAGTCCCCCTACTTTGAGTGAGTTACCCCTTTTTTAAAGTCTTC
TAAATGAAATGGTTCAATTCAAAATAGGAAAATTGGGTTAGTCCAGGAAA
TTACtttatacaaaaacaacagcccCCCCCACTACCTTGTCCTCAaaggt
taatattttctctttgaaaacttgacctctgatactcagggtacgccccc
actaatgaaaatgcaggtactcccaaacatatcaggtaccccctaaattt
aagaatacttcCAGGTACCTTGCTTCTTTagcactttttatttttaggta
cccccaaatttCTGCAGGGGGTGGACCCTATGATCCATCTTCCCAAGAAA
AGTTTTTCTATGGCATTTTACTTTTCATCGCTTTTCTCACTTCTTATTTC
AATAACAACGAAATTATTATATATAAACTTTTTCGGATCAAATTAGCTCA
TATGCAAGAAGTTACAGGCACCAGTTAAAGGAATATGATCTTAGATTATA
GCTCTTTCCTGCTTTTGAGAGATTATGAGGAAAAGTTTGGAAGATATCCA
GCCCAGAAATTATGCCCAGCCAAATTTTTTAAGGTTAATCCTTAAAGAAG
GCACCGCAACTTTCACCTCCCTGCCTCCTTGTAATGTTGATAGGGGAAGG
ATCTAACGGCGTAATAAATGCACTTGACTGTAGGCTATTCCTATCCCACC
ACGCggttttttgatcaaatttgttTTACGTGTTTTACTTTAgacccggg
ggggtactagggttgcaagctgacgAGTATGTGTCGCCCGATTtttgacc
ctcggacccttagtgggactaaaaaggagaaaaaatgtTGCGATTTTTGC
GACCGTTATTGGACTAATATGTCCAAATTTTTCAAGGAGAAAAAAGTTga
gattttcatatttttccgaTCCTTAGTtggactgaaatttaattttctgt
tttttccaACTCTTACAGAGACTTTCAGGTCCCAAAAAAGACTTCCTTAA
GGGCGACACATTCCCCGTACCCTTTACATTGATGTGGTGTCAGTTCATTG
AAACAGTATTGCGATGAGTTCAAGTGACGTCAACCCCCTTCCCGCAGGAT
CCTAGTaatatatttgtaaaaaattacaGATAGAACAGAGTGTCGAGAAG
AAAATCGTGTCGGTCTGGTACATGCaaacttaaagggataatcaatGAGC
AAAGGTCGAGATATTTAAGTTTTTGTCTTTTAGGATGATGAcccattttc
gaaaatttcaaattttgatatcttgattttggaaaattattacACAAAAA
TACNgaaaatttcaaattttgatatctcgattttggaaaattattacaca
aaaatactttgaggttttactaAGGACCACAGAAAAGGTTTCCGtaatct
aaatatctcaaaccatctgattatctctTTAACTGAGGACTGAATGAACT
GGACTTTTCTGAACCACATGACTTGTCAATTTTCAAGCAGAGGAGTTCAG
TTTAAATTTAANCTGAACTGGACTCTTCTGAACCACATGACTTGTCAATT
TTCAAGCAGAGGAGTTCAGTTTTAAATTTAATAGTTTATGTATAAGGATT
GGTATTCAATAGCTACACATTTCAACACATTAAAACCATAGAATAAGTAT
TTTGAGAAGAAGtcatttaaaaataattcaaattcaataagTAAAGGTAT
ATTATAGAATTTTAATCATTTCAACGTACTGTAATTTGTATATTAGGTTT
CTAACATCGCGTTGGTTTACAACCTACACCCAAAACCACTCAACATAACC
TAATTGCTAATCAATACTTGAAAGTATGAGATAATGGAATATAAATTCAT
GAATTAATGAATAAAACAGAATTCTTCTTTATAGTGAAGTTATTATTGCA
TATAAATAGATTTCTTCCCTATAGAGAAGTTATTATTGCATATTAATTTG
TATGATTTTGTCAAGATTAATCACTTCATGATCACTTTCGCTTCAATAAA
TATCGAAAGTGCAACTTTTGAGAAACATTTTCTATGTTGGCGACAAAGGT
CAAAGATTGAATTCAAAGgattttttctttgtcaaattCATGTTTGGAAA
TTCAGAAGACTGTTGTTAGGGGTGCAGTATCTAAATCTGATTCAAAGTTG
ATTAATTCCTCAAATATGGGCCAGCTTACTACAAGATCTGGTAACATCGT
TTTTAACACAATAGAGATTGAAAATGTAATGGGTGATATTTACAAGACTG
GAGTGCTGAGACTATCCATTCTTTCTTACAATCAACGTTTAGCATTCACT
ATATGCTATTTAATAATGACTTGTTTTGGAGGTGTTTCAAACATGTTATC
TATCATCTGTCTACGTAAAAAATACAAACTGTCGAAGCGAAACCAGATGG
ATAAACTATTGCTTTCTTTAGCCTCGTGTGAGACTCTTATTTCATTTACA
GTCTATCCGCTCAATGCTTGGATTGAATTTTGGGAAAACATACCATTCAA
TGATAAATATAGAAGACTTAAAGCCTTCTGGATATTAAGTTTGTGCCTAA
TATCAAAGCTACTATAATTCTGTTAGCAGTCGTCAGATATTTGAGCCTTA
AGAGAATCGATACGTGTAACTTATGGTTGATCAAAGGATACCGCTTAAAC
GTGACAATCGTGTTTTCGTGGTTGCTTCCTTTCGGTTTAATATAGTATAT
TTAGTATAGAATCAGTGTCATTAATActgcttttgtttttttaacattGA
TCATACTACCGACAATGTATATTTTAATCATTGCACAATATCGAAAGTCC
AGACAACGTGTAAATACCCTACAATCGAAGGTTCCAAAACGTGATCAAAT
AACAATCAGAACAACCAAAAGACTCGTCCGGCGTTCTCTATGGTTGATTG
GTGCATATTTCTTATCAACAATATTAGCTAGCCCAGCCATTTATGTGTTT
CTTAGCAACGAGATAGTAAATGGATGGTGGTATCATTTGACCAATATTTT
GTATCTTGCTAATTCTTGTGGAAACCCGTCTATTTATTATTACACTGATC
AAAGGATAAGAAGAATCGCCAAGAATCTTTTTAAAAGAGATCAGAAAacg
taaatttgaaaattttattctgCACGAGCCTGATATGCCGAATCTTGCAG
GTGCTGACTTCAAGTGTCGTTACACAGTTGGTCACGTGTAAACTTAACCT
CGTTACATAATTTACCGTTGCTTGCTCACCTCTCTGTAAAATAAAGTCat
ttgtgtcacagacccgttgggaccccagccccactgggaaatttggcaaa
aatttcgtccacGATGGGAAAATatcctgaaatttcagccccactgcgcc
actggaaaattgactttgatttcatccccattagaAATTCactgtttaaa
aattgcactccaaacccatccccactgaattttttaaccttggaacaata
gaatttttatccccattgggatttcaataggaaattttatccccactgag
gaaaaagtccCACCGGGGccgtgagacaggggtgtttgtaTTATCTCAAT
TTAAGTATTATAAATCAGAACTGTATATAATCTTCGTAGTATCATAAAAA
TCTCGTAACCAGAGCCTCATAACTGACTTTTTGATTTACTGATGAAAATA
GACATCAGTcaaaattgatgattttttgaaaaactttcgcAAGCATATTA
CCAAGTATGATTTGGttttgaaaatgagattttggtAAGCATAATAAGCG
TCAGCCCGAATTTACCGTCTGCTTGCTTATGTATAAAGCAAAAGAAGTTT
AATCTCAATTATCTTATTCTTTTAGGTTCTTACGGAGGATTTGACAAAGA
TCAACCAACGTCATCGTCGGGAGGGAAGAAAGTTGTCGCTACAAAACTTA
AAACAGAAAAAGGATATAAAAGGTATGTTAAATAGGTGTAATTGTTTCTC
AATATCGAAATATTATCTTCACTCTCATTATCTCTATAAACATATAACTG
GTACCCTTAGCAATCACGTTTAATGTGTAACAcagaacttttttctggga
caccctgtagagaCTGGATTACGAGTAAACTAAAGGATCCAGATAACTTG
TTTCCGTTACGGGAAAATTTAAGTTATTGGAGATTTCAGTTAAGTGCAAT
CATGGGCGAAAATTGTGAGacaacccccctcccccccagTGGCAATGTTG
AAGGGCATTGGAAAAGTCGGTGGGAAGGTCGTTCGGAAGGGGGGaccgtt
cttttttttttcaagagtattttccagtgtttttctcaaacattaaagtc
catgattgtagatgcAACTGGATTTTGGACTTTTATTGTAacgaaaattc
aattttttttctaatagtTTGGTAATGATCGGTGACGGGGTAACAGATCT
GGAAGCCTATCCACCCGCTGATCTCTTCATCGGTTTTGGTGGTAATAAAA
TACGTGAAAATGTTCGGCAGAATTCTCCATGGTTTGTCACTCAATTTCAA
GAACTAATTGATGTTTTGTGATTGGTAGCTAATGTAGTCATGTGATCTAG
TGAATCTAGTGAACTTATGCTCTCGGGTATCTATTAAGCGTCTCCCCTGC
TTTTTAACTTTTAGGGTCTATCCTTTCCACCTATTCCGCCGTTTATTTTA
CGGCAATTggaaaaaaagtggaaaatttttagaagattttgaaatttcag
tcccattctgggtccttttttttgcaaattttgacaaaatttttaaaaaa
caagttccACGTAGAGTCCATTTTTTGAACCTCAGCttgtatgtatgtct
gtctaTATGTCAcctcaaaactttggggcaggctggagacttcaaaaatg
gtccgatttggctgaaatttttcacacttgTTCCTGGGGTGAATATCTGa
gagtgattttttttcaaaattttcatttcacgGGCGTGGTCACAAGGTTT
AGCCCAAAAAGAGGCTAAAACTTTTCTTATATCAAAAATTTCCTGTCGAT
GTTTAAAATTGGGCCCATGAGTAATTTAAAAGATACTTAAATTGAGTccg
tgcggttagcacgttcgacaattgacaattttttgtaatttaacgttttt
tcagaaaaatcttgGGTAAGAATTGCAATTTCTGTACTTCCTCTTTTTTC
ATTGGATCTTTCAATTTTGGAAGTGTACAGCTTTCAGACTGTATTCTCAA
CCTTATtcgaacatttttgagcttttagattcTGAAAGCCTAACGTTAAA
CCTCTTCTTTCCGAGCGTATTTTAAAGCACTAAAAAAATTTCCCACGATT
TCCTTTTAGTACCAAATATTGTGGCGGAAATTGTAGaatgattcaaaata
aataaacaacacaaaaatttgattttttttaaacaaagctTTTCGAGTCT
TAACTGCTCATCATcaggttaaaaaaaaatattggaattgCTTATGAAAA
ATACGTAACCCATGAACaaatgaatagaccttttcataaactacgtcacg
aacatcacttgtctcgtattcaaacaattgccatggtgattaaggTCTAt
ggagacattaaatgatttttttatgaataggaagtagttttaataaattc
CGCTGGGAGTttatcaccatggcaataatttcaaaaccaggcaagtgatg
tttgtgacgtaatttatgaaaaggtctatattgAGTACTTATTGCGTTGG
TCAATATGAAAATACCATAGTCTTTCATCCAATTACTAGTAGGTtatttt
tctcaactttttttattttaggtagtttttttcaaattttcaaattttat
atatttaatagcaatgataaaatttcaactttctgaaatcattttttgtt
tttaccttGATTAAACGGTATGGGAGCTCAATACTTTGTTTTATTGTGTT
AGCTGACATTCAAGCTGAAATAATTCTTTCGTAAAAATATTTACGCCTGT
AAATATATGATCAGCTTCTTTTCAAATGAAGTACCGATTGCAT

Coding sequence (CDS) from alignment at sc0000054:470074..478416+

>TCONS_00005587 ID=TCONS_00005587|Name=TCONS_00005587|organism=Clytia hemisphaerica|type=CDS|length=675bp|location=Sequence derived from alignment at sc0000054:470074..478416+ (Clytia hemisphaerica)
ATGGCCACCATACCAGACAACATCAAAGAGTTATGGAGCAATGCAGATGC
aatatgttttgatgttgatagCACAGTTTGTACTGGTGAAGCTATTGATG
ATTTTGCTGCCTTCCTTGGCATTGGTGATCAAGTGGCAGAACTcACAAGG
CGTGCTATGGGTGAAGGGTTATCATTTCGACAATCATTAGATGAGAGGTT
GAAGTTGATGAAACCATCAAAGCAACAACTCGATGGATTCATTGAAACGC
ACCCACTTCAACTCACACCGGGTGTCAAGAAGCTTGTATCAAAACTTCAC
GAACGAAAGAAGGATGTTTATTTAGTATCTGGTGGTTTTCGAAGTTTCAT
AGCACCAGTAGCAAAAAAACTGAACATTCCCCTTGATAACTTGTTTACTA
ATATATTCATCTTCAATGACGATGGTTCTTACGGAGGATTTGACAAAGAT
CAACCAACGTCATCGTCGGGAGGGAAGAAAGTTGTCGCTACAAAACTTAA
AACAGAAAAAGGATATAAAAGtTTGGTAATGATCGGTGACGGGGTAACAG
ATCTGGAAGCCTATCCACCCGCTGATCTCTTCATCGGTTTTGGTGGTAAT
AAAATACGTGAAAATGTTCGGCAGAATTCTCCATGGTTTGTCACTCAATT
TCAAGAACTAATTGATGTTTTGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003172XLOC_003172Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005587-proteinTCONS_00005587-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005587-exon-sc0000054-1491911889:470074..470487TCONS_00005587-exon-sc0000054-1491911889:470074..470487Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:470074..470487TCONS_00005587-exon-sc0000054-1510915933:470074..470487Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:470074..470487TCONS_00005587-exon-sc0000054-1575043694:470074..470487Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1491911889:471155..471239TCONS_00005587-exon-sc0000054-1491911889:471155..471239Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:471155..471239TCONS_00005587-exon-sc0000054-1510915933:471155..471239Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:471155..471239TCONS_00005587-exon-sc0000054-1575043694:471155..471239Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1491911889:471745..471794TCONS_00005587-exon-sc0000054-1491911889:471745..471794Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:471745..471794TCONS_00005587-exon-sc0000054-1510915933:471745..471794Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:471745..471794TCONS_00005587-exon-sc0000054-1575043694:471745..471794Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1491911889:472127..472272TCONS_00005587-exon-sc0000054-1491911889:472127..472272Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:472127..472272TCONS_00005587-exon-sc0000054-1510915933:472127..472272Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:472127..472272TCONS_00005587-exon-sc0000054-1575043694:472127..472272Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1491911889:476249..476345TCONS_00005587-exon-sc0000054-1491911889:476249..476345Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:476249..476345TCONS_00005587-exon-sc0000054-1510915933:476249..476345Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:476249..476345TCONS_00005587-exon-sc0000054-1575043694:476249..476345Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1491911889:476791..478416TCONS_00005587-exon-sc0000054-1491911889:476791..478416Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1510915933:476791..478416TCONS_00005587-exon-sc0000054-1510915933:476791..478416Clytia hemisphaericaexon
TCONS_00005587-exon-sc0000054-1575043694:476791..478416TCONS_00005587-exon-sc0000054-1575043694:476791..478416Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:470074..478416 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.61513	3.88321	7.43711	8.16953	17.6136	14.4078	10.5195	11.7734	4.19885	6.21983	4.41117	2.45283	1.53106	1.13499	1.97284	2.28192	3.63124	2.46302	0.769681	1.34301	1.54392	0.978647	2.78439	2.90611	2.45168	3.11518	7.37416	5.10829	4.38374	3.81768
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR023214HAD-like_dom
IPR023190Pser_Pase_dom_2
Vocabulary: Biological Process
TermDefinition
GO:0006564L-serine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0004647phosphoserine phosphatase activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006564 L-serine biosynthetic process
molecular_function GO:0004647 phosphoserine phosphatase activity
Blast
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BLAST of TCONS_00005587 vs. Swiss-Prot (Human)
Match: SERB (Phosphoserine phosphatase OS=Homo sapiens GN=PSPH PE=1 SV=2)

HSP 1 Score: 239.58 bits (610), Expect = 1.571e-72
Identity = 112/217 (51.61%), Postives = 152/217 (70.05%), Query Frame = 2 
Query:  293 IKELWSNADAICFDVDSTVCTGEAIDDFAAFLGIGDQVAELTRRAMGEGLSFRQSLDERLKLMKPSKQQLDGFIETHPLQLTPGVKKLVSKLHERKKDVYLVSGGFRSFIAPVAKKLNIPLDNLFTNIFIFNDDGSYGGFDKDQPTSSSGGKKVVATKLKTEKGYKSLVMIGDGVTDLEAYPPADLFIGFGGNKIRENVRQNSPWFVTQFQELIDVL 943
            +++L+ +ADA+CFDVDSTV   E ID+ A   G+ D V+E+TRRAMG  + F+ +L ERL L++PS++Q+   I   P  LTPG+++LVS+L ER   V+L+SGGFRS +  VA KLNIP  N+F N   F  +G Y GFD+ QPT+ SGGK  V   LK +  +K ++MIGDG TD+EA PPAD FIGFGGN IR+ V+ N+ W++T F EL+  L
Sbjct:    7 LRKLFYSADAVCFDVDSTVIREEGIDELAKICGVEDAVSEMTRRAMGGAVPFKAALTERLALIQPSREQVQRLIAEQPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKLLKEKFHFKKIIMIGDGATDMEACPPADAFIGFGGNVIRQQVKDNAKWYITDFVELLGEL 223
The following BLAST results are available for this feature:
BLAST of TCONS_00005587 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
SERB1.571e-7251.61Phosphoserine phosphatase OS=Homo sapiens GN=PSPH ... [more]
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