TCONS_00005590 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005590
Unique NameTCONS_00005590
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3222

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005590 ID=TCONS_00005590|Name=TCONS_00005590|organism=Clytia hemisphaerica|type=transcript|length=3222bp
AGACATTGTACTATCACAACCGACGTCAAATAACAATATTATGAcgtcaa
atatatttttaaaacaacATCAAGATGCAGCTGaatgaaatttctttctt
ttgtatCGTCCTTTTCGTGAGTATCGCACGCATCTAAATTGCAGAAGAGA
AGATTTTTTTCGTACCGAAAAGGAGAAATCATTTATATCATTAATTGTTG
TTTatcattgtttatttttattatcaaaatatattttatcatgGATAACC
TCGCACCCGCAAACGTGGTTGCGGATTGTGAGAACAGAGACTACACTTTG
GAAGAAGTTCTCGGACAAGGATCGTACGGAACAGTTTACCAAGCTTCTTC
CAAACGGTTTGATCGTCCTGTTGCTATCAAGATTATCGACCCGAAAAAAG
CTGGCGAGGGGTATATGGAGTATTATTTACCTAACGAATATAAGAGTTTG
CTGGCAGTCAAGGGATCACAATATGTGGTACAAATATTAGACGTCTTCAG
AGGTTCCACAGGAATCGTTTACTTCGTCATGGAGTGCGTCGAGGACGGTG
ATCTATATGAATATTTGGAGAATGAGGCTTTGCCTGAAGATGAAGCTCAA
GACATCTTCAAACAAATCTGCTTGGGGATCAAGCACTGCTTTGACAGGAA
TATTGTTCATAGAGATCTCAAGCCTGACAATATTCTTCTTGCAGAAGATG
GCACTTGCAAGTTAACAGattttggctTCGCAAGGAATGTTGGGGATGGA
TCGCTCCTTTGGGATCGATGTGGCACCAAGGAGTATATGGCACCAGAAAT
CATCAAAGGTGAAGCCTGGTATAATGGAAAAGCATCGGATCTTTGGAGCT
TAGGGATTATTTTGTACGAATTAGTCACCGGTCAACGTCCCTTCGACAAC
GAAGATAACGATAAACTTTTTCTGAAGGAACAGCAATTGGGCCCAGCATG
GCCACCAAGCATGTCTATCGCATGCAAGAACTTGATAACATCATTGTTGA
ATCAAGATCCAGAAAGACGACCGTCAATTGAAATGGTTTTGAAAAGTCCA
TGGTTATGTGAATCGAACTTGCCAACAGaaaagAGCACACAACATGAAAA
TGTTTCATACTTACATCGATCAGAAAAAGTTCCTTCTCATATCAGTGATA
ATGTTGTCAATCAACAGTCAGAGAAATCAGCTGTACCAATCACTAAAGCA
GGCCACAAACACAAGTTGGAGGATTTCATCGACGTAGACAAATATGAACA
AtccaaattgaaaataaaacgacaaaaaaattcGGACAAGATTGGGACAA
ACCGTCTATATATGGACGCTTTTACTTGGCAGAAAATCAACCAACAGATT
TGTTGTACAAATCgaataaaatatcattttatcaACGAAACAAGCTCAGA
ATGCAACAGTCATTACAGAATGGCTAGCCAAACCAATATAGCCAATTCAA
ATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACG
AGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAAC
CAATACTAGTAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACAC
ATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAAT
TCAAATAGCAAAACACATTATGGAATACCACCCCTAACTAATAATCTCCA
GACGAGATCGGCCAGTTCAAATGGCAAGACGCAGCATGGAATACCACGCC
CAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACAT
TATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAGTTC
AAATGGCAAGACGCAGCATGGAATACCACGCCCAACTAATAATCACCAGA
CGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCA
ACTAATAATCACCAGACGAGATCGGCCAGTTCAAATGGCAAGACGCAGCA
TGGAATACCACGCCCAACTAATAATCACCAGACGAGATCGGCCAATTCAA
ATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACG
AGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAAC
TAATAATCTCCAGACAAGATCGGCCAATTCAAATGGCAAGACGCAGCATG
GAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAATTCAAAT
AGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAG
ATCGGCCAATTCAAATGGCAAGACGCAGCATGGAATACCACCCCCAACTA
ATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGA
ATACCACCTGCAACTAATAATCACCAGACGAGATTGGCCAATTCAAATAG
AAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGAT
CGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAACTAAT
AATCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNC
AACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATT
ATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAATTCA
AATGGCAAGACGCAGCATGGAATACCACGCCCAACTAATAATCACGAGAT
GAATTCAGGCACGTCGCATGGAAACAGGAATGAAGGGATAGCCGGTCAAA
CCAACAATCTACctgatataaaaaataaaaacacaaaaaataccAACAGA
AATTTTATTGCTAGAAAAAAGCAGTttattactttgcttttttTCGATAA
AAATGTCATTAGAAAATATCGATTTGTTTACATGAAACGACAAAAGGACG
TCCCTCCGACAGATTTAAGATCAATGATATCAGAACTGGTACCAAGCTTG
CGTCCAGATAGAAAACCTCCCTGGTATTgtacaaaacaaataaaaatcgT
CAATTTACACCATCTTGAAATGCAAAAGATTATTGAACTTTAATAACTCG
TTTGTAAGACTAATTCCAAGGCTTTGGTTAAGTATCGCAAGAGGAAGTAT
CACAAGAACCTCGACAATAACAGCCGTAGCTTTGTTGATTTGAAATATAA
AGTCATATAATTGTCTGGgctg
Run BLAST on NCBI

protein sequence of TCONS_00005590-protein

>TCONS_00005590-protein ID=TCONS_00005590-protein|Name=TCONS_00005590-protein|organism=Clytia hemisphaerica|type=polypeptide|length=950bp
MDNLAPANVVADCENRDYTLEEVLGQGSYGTVYQASSKRFDRPVAIKIID
PKKAGEGYMEYYLPNEYKSLLAVKGSQYVVQILDVFRGSTGIVYFVMECV
EDGDLYEYLENEALPEDEAQDIFKQICLGIKHCFDRNIVHRDLKPDNILL
AEDGTCKLTDFGFARNVGDGSLLWDRCGTKEYMAPEIIKGEAWYNGKASD
LWSLGIILYELVTGQRPFDNEDNDKLFLKEQQLGPAWPPSMSIACKNLIT
SLLNQDPERRPSIEMVLKSPWLCESNLPTEKSTQHENVSYLHRSEKVPSH
ISDNVVNQQSEKSAVPITKAGHKHKLEDFIDVDKYEQSKLKIKRQKNSDK
IGTNRLYMDAFTWQKINQQICCTNRIKYHFINETSSECNSHYRMASQTNI
ANSNSKTHYGIPPPTNNHQTRSANSNSKTHYGIPPPTNTSNHQTRSANSN
SKTHYGIPPPTNNHQTRSANSNSKTHYGIPPLTNNLQTRSASSNGKTQHG
IPRPTNNHQTRSANSNSKTHYGIPPPTNNHQTRSASSNGKTQHGIPRPTN
NHQTRSANSNSKTHYGIPPPTNNHQTRSASSNGKTQHGIPRPTNNHQTRS
ANSNSKTHYGIPPPTNNHQTRSANSNSKTHYGIPPPTNNLQTRSANSNGK
TQHGIPPPTNNHQTRSANSNSKTHYGIPPPTNNHQTRSANSNGKTQHGIP
PPTNNHQTRSANSNSKTHYGIPPATNNHQTRLANSNRKTHYGIPPPTNNH
QTRSANSNSKTHYGIPPPTNNHXXXXXXXXXXXXXXXTNNHQTRSANSNS
KTHYGIPPPTNNHQTRSANSNGKTQHGIPRPTNNHEMNSGTSHGNRNEGI
AGQTNNLPDIKNKNTKNTNRNFIARKKQFITLLFFDKNVIRKYRFVYMKR
QKDVPPTDLRSMISELVPSLRPDRKPPWYCTKQIKIVNLHHLEMQKIIEL
Run BLAST on NCBI

transcript from alignment at sc0000054:486954..494427+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005590 ID=TCONS_00005590|Name=TCONS_00005590|organism=Clytia hemisphaerica|type=transcript|length=7474bp|location=Sequence derived from alignment at sc0000054:486954..494427+ (Clytia hemisphaerica)
AGACATTGTACTATCACAACCGACGTCAAATAACAATATTATGAcgtcaa
atatatttttaaaacaacATCAAGATGCAGCTGaatgaaatttctttctt
ttgtatCGTCCTTTTCGTGAGTATCGCACGCATCTAAATTGCAGAAGAGA
AGATTTTTTTCGTACCGAAAAGGAGAAATCATTTATATCATTAATTGTTG
TTTatcattgtttatttttattatcaaaatatattttatcatgGATAACC
TCGCACCCGCAAACGTGGTTGCGGATTGTGAGAACAGAGACTACACTTTG
GAAGAAGTTCTCGGACAAGGATCGTACGGAACAGTTTACCAAGCTTCTTC
CAAACGGTTTGATCGTCCTGTAAGTTAATCATACTTTTATATTCTTTCTT
ATAAGTTCTTTTTTTCTGTGCCACGTATATTGAAACTGAGTTTTTAGTTA
acaaaacatactatctttccaaaaattCTTAAACGTCTATAGTGATTGTG
ATTGTATTCAAAATCCAAGTATAGAATCTGACCATGTTTTCTTAAGAATA
AAAAACTCTCTCAAAGTGTCTACTACTTAGGCGCTCTGATATAGTGATAA
TGACCTTGGTTGCCACAttaaggttcgattcccaccgACAGTGGTTCACT
TGTCAAGTAAACAAACCTTCGCCCAGGTCAACCCAGGGTTGCTACAGCAA
GGTTTGATTTCCACTGACAGCGGTTCACTTGTCAAGTAAAGGAACCTTCG
CCCAGGGTGCTAACGGAGCGTTCATTGAGtgcatctatagttgcgaaaat
gggcctCCTGCAACTTAACCAAATAGAATAGAAAAATACTAAGGCTATCT
ATACCTActttatcggccaaaacttagccggccttaattttagtcacctc
gtcaaaatttaatcCCTAAGGGCCAATTTAGGctatttctaaatttacaa
gcaaATAGGaggaaaataggagaaagcttaaaatagtggaaaataaggaa
agcttaattataaacttttaatttggcccaaatttttagtcgtttcaaat
tttagtcgggCCTTATTTTTAGTCggtcctaattttagtcaccaagccaa
aatttattcACTTAGGGgggactaagttttggccgataaggtatatggAA
TATGTTCCTTCAAGATGTACAAAAATTGCTTACATGTGTGAAACCCTATT
TGAAAAGCATTTGAAAAGTGATAGATAGCGTGGGACAGAAACTTGCAACT
TAATTTGAAAACGGAATCATTTCTTTTCTAGGTTGCTATCAAGATTATCG
ACCCGAAAAAAGCTGGCGAGGGGTATATGGAGTATTATTTACCTAACGAA
TATAAGAGTTTGCTGGCAGTCAAGGGATCACAATATGTGGTAAGTACTAG
TAATTATTATAAATTAACTAGTTAATTGTAGACATAACCCATGTGTTATA
TTTGATCGGGTAATCATATTTGACACCCGTGTCTCGTAGCACCGATGGAA
CTTTTCCCATAGCGGGGATAAAAATTTTTATCGAAATTATTGTTCCAAAT
TAAGAATATCCATTAGGGATTGTTTTAGTGTATTTTTTACATTGATTTTC
GAATGGGGATGATATGAACGTCAATCTCCCGGTTGGGCTGAAATTATAGG
ATATTTTCCCACCGGGGACAAAATTTTGGCCAAATTTTCAAATCGGATTA
GGATTGGGATCGGAGGATTTGTGACACAGGGATGTTATATGGCCTGCGAG
AACTTTCTGATTAAAACCTTCAGGTTTTTTTTTGTGTAACTATCGTGCCA
AAGTCGAAATATCAGGTTCTTACGTTGAAATTGTATTGTTTTCTTACTAA
AAATCAAAAACTTTTAACTCATACTTCCTAAATTTGAAAAATATTTAGAC
AAAGATGTTTTGAGGTTTTTCTCAGGATAATAGAAGGATTCAGCATGCCA
CATATCTCAATCCATCTGATTATATCTTAGATTTGGATGTTTCATGAAAC
CTCTAAATAAAGTTGTGTAAATTAACGCAACACGCAATACACGCAACACG
TCTTTCAAATGTTCAAAAGTGCCTTACAATGTTAGATTTCCATTAAAAAA
AGAAAACCACGCCGTTGTATTTCGCTGAAGCTTACGCTTGCAATGGGCTC
ACTACGTGTTCGTGCTCACATGTGTCCAAAATTTCAAATTAAAACATGGA
GGCTAGTTACCAGTTCTGCTTTCGTTGACAGAAGAGAGTTTTTGAACAAT
GATTTTTTTCTATAGGTACAAATATTAGACGTCTTCAGAGGTTCCACAGG
AATCGTTTACTTCGTCATGGAGTGCGTCGAGGACGGTGATCTATATGAAT
ATTTGGAGAATGAGGCTTTGCCTGAAGATGAAGCTCAAGACATCTTCAAA
CAAATCTGCTTGGGGATCAAGCACTGCTTTGACAGGAATATTGTTCATAG
GTAATTTGGAAGAATTTCTGTTTGCACTGGACTGACTTAGCCCTTTGGAC
AAAGAAACATTTCGTTTTCTTACTTCCGAGCTGGCAAATAACGTTGTTTG
AACGTTTACCTAACGTTGTATAGACGTTTTGAATGTTAAATAAACGTTAG
ATATAACGTTGAAATAACGTTTTGTGCCAGCTGGGTTTATTTGACTGAAA
TTAGAATTTTCCTTTCCTGGCTGCCTTATAACGGGGGCCCCAATAACTAA
AAAGTTACATAAAGATTTCCGAGGTATTGCAAACTTTTAACTAACTGAAG
AACTAGTGAGTCTTCATCAAGTTAATCATTATAAGCAGTTTTGAATCTTA
TATTCTTGTACTCTTTCATTTTAATCATTCATTTATTTTCAATTTCAGAG
ATCTCAAGCCTGACAATATTCTTCTTGCAGAAGATGGCACTTGCAAGTTA
ACAGGTATATAGATTATATAGATTTTGAAAAATAAATTCAACAACAATGC
TTTCATAATTTGCACAAATGTTAAGGTCGTCTTGATAATGACAAATATCT
AAATCTAACGAGGCATTTTTGATATCTTGTGAAAACCATTCTGTAGTCTA
AAAACGCTAACATGCTTTCCACATTGCGGCAGAAAAAAAGGATGCACACT
ACTAAAAAATACTAACGAAAATTCTATGATCTGTTTAAAACATcatcatt
ttgtattttttaatttaagattttggctTCGCAAGGAATGTTGGGGATGG
ATCGCTCCTTTGGGATCGATGTGGCACCAAGGAGTATATGGCACCAGAAA
TCATCAAAGGTGAAGCCTGGTATAATGGAAAAGCATCGGATCTTTGGAGC
TTGTAAGTCTATTTACCCATCAAGTATTCTGATTTTATACGAGAATTGTG
TTGGGGTACTCTGTATCAGAGTGTGTCTCACATTTATCGTTTCGTCGTTC
CTCTacgaaaatgaatttttaaataaGCCGGATAAGATATCGGATCTATG
TACAGACTATGTTGGGGGTGGTGTATGCTTTATTGGTACGGTATCTTCAA
GTTAATTTTAGTTGGCTTTGATCAAGGTTGTCGTAAAAACTGAGTCCCGT
GTTAACACATTATTCCTTCTTAAAAAACGACTTCAATTTaagtttgtgtt
ttgaaaagaataacAATACCCTCCTACCGATCTATCTATTACTAAAGCCT
GAANATGTTGGGGGTGGTGTATGCTTTATTGGTACGGTATCTTCAAGTTA
ATTTTAGTTGGCTTTGATCAAGGTTGTCGTAAAAACTGAGTCCCGTGTTA
ACACATTATTCCTTCTTAAAAAACGACTTCAATTTaagtttgtgttttga
aaagaataacAATACCCTCCTACCGATCTATCTATTACTAAAGCCTGAAT
ATACATCCATTCTGAGAGCTGGTTATTCATGTGAGTcttgggggaggggg
tactagggttgcattttgggggggggggggggtgccgcccgaattttgac
ccttggacccttaccgggactaaaaaggagaaaacaaaggaacattttct
agattttacgacccttattgggacaattttgaccaaattttaatctttcc
gggggtaaaaagttgaaatctttttatttcTCTGACTCTTAGCgggactg
aaatttaattttttgacttttccaacccttagcgggactttggaaatcca
aaaaaggtacccttaaggacTTCAAACAGTTGAATTGTTAAAGCCACCTC
GTTCGGAGGATTTTTAAGCTGTCTTTTAAATTCGTATTTGTCTATTTTAG
AGGGATTATTTTGTACGAATTAGTCACCGGTCAACGTCCCTTCGACAACG
AAGATAACGATAAACTTTTTCTGAAGGAACAGCAATTGGGCCCAGCATGG
CCACCAAGCATGTCTATCGGTAAGTGAAACTTAACAACCACAGCTAGAAT
TTCCTATAATAAACAGAACCTTTTTCGGGGGTGGAGGAATTTAATCTTGT
GACATAATTGAAAGTAGAAAACCTATAAACTCTTAtctttgagaggattg
atatggTTGCCCTGGAAAAATACTTTTTGACTACAAAACGatgatgaaat
ttgtaaaattcatTAGAAAAAAAGGGCTATTCAGCTGATTGACAAGAGTC
TGAATAACGGGAAATCTAtttgtttgaaaagttttcagATTGATTGCTTC
TTATTCAAGGTGTAAGTTTTCATTCACAACATTCTAATAACCATCACTTT
TATTCTAGCATGCAAGAACTTGATAACATCATTGTTGAATCAAGATCCAG
AAAGACGACCGTCAATTGAAATGGTTTTGAAAAGTCCATGGTTATGTGAA
TCGAACTTGCCAACAGaaaaggtaattttgaataacatattgaaaataaa
atagaatcaAAAAGTGCTCAagctaattttgaaaaaaatcgaacGAAATA
TCAAAAAAGTATAAAGTAATAACTTGTAATTGCTATTACGTTGTACTACC
AATATAAGGCTGGCAAAAATTAAATAGCACGGACATAATAAAAGATACAA
AACCCCTTAGAAAAcaaaagtacacgttttttataagaacatctaaaatt
tttgaagctttcggatgaTCTTTACATAGTCTTAGTGTTGTTCCTAAAAC
CTAAGAAtacttttaacatgttcttatttttaccactTTGGAAGTATTTT
CGTCCATTTTCCTAATAAATTGGGTATTTTTGAGACTGCAAAGACTtaga
atgtttttaacttgttcttagaattttggcaatcgaagccttatgttctt
atatagtttgctcatACAGtatagaaaattttaataacAATGTCAGCATA
TAATactttaaaattaatttatttgtaATTTTCAGAGCACACAACATGAA
AATGTTTCATACTTACATCGATCAGAAAAAGTTCCTTCTCATATCAGTGA
TAATGTTGTCAATCAACAGTCAGAGAAATCAGCTGTACCAATCACTAAAG
CAGGCCACAAACACAAGTTGGAGGATTTCATCGACGTAGACAAATATGAA
CAAtccaaattgaaaataaaacgacaaaaaaattcGGACAAGATTGGGAC
AAACCGTCTATATATGGACGCTTTTACTTGGCAGAAAATCAACCAACAGA
TTTGTTGTACAAATCgaataaaatatcattttatcaACGAAACAAGCTCA
GAATGCAACAGTCATTACAGAATGGCTAGCCAAACCAATATAGCCAATTC
AAATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGA
CGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCA
ACCAATACTAGTAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAAC
ACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCA
ATTCAAATAGCAAAACACATTATGGAATACCACCCCTAACTAATAATCTC
CAGACGAGATCGGCCAGTTCAAATGGCAAGACGCAGCATGGAATACCACG
CCCAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACAC
ATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAGT
TCAAATGGCAAGACGCAGCATGGAATACCACGCCCAACTAATAATCACCA
GACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCC
CAACTAATAATCACCAGACGAGATCGGCCAGTTCAAATGGCAAGACGCAG
CATGGAATACCACGCCCAACTAATAATCACCAGACGAGATCGGCCAATTC
AAATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGA
CGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCA
ACTAATAATCTCCAGACAAGATCGGCCAATTCAAATGGCAAGACGCAGCA
TGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAATTCAA
ATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACG
AGATCGGCCAATTCAAATGGCAAGACGCAGCATGGAATACCACCCCCAAC
TAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATG
GAATACCACCTGCAACTAATAATCACCAGACGAGATTGGCCAATTCAAAT
AGAAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAG
ATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAACTA
ATAATCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NCAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACA
TTATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAATT
CAAATGGCAAGACGCAGCATGGAATACCACGCCCAACTAATAATCACGAG
ATGAATTCAGGCACGTCGCATGGAAACAGGAATGAAGGGATAGCCGGTCA
AACCAACAATCTACctgatataaaaaataaaaacacaaaaaataccAACA
GAAATTTTATTGCTAGAAAAAAGCAGTttattactttgcttttttTCGAT
AAAAATGTCATTAGAAAATATCGATTTGTTTACATGAAACGACAAAAGGA
CGTCCCTCCGACAGATTTAAGATCAATGATATCAGAACTGGTACCAAGCT
TGCGTCCAGATAGAAAACCTCCCTGGTATTgtacaaaacaaataaaaatc
gTCAATTTACACCATCTTGAAATGCAAAAGATTATTGAACTTTAATAACT
CGTTTGTAAGACTAATTCCAAGGCTTTGGTTAAGTATCGCAAGAGGAAGT
ATCACAAGAACCTCGACAATAACAGCCGTAGCTTTGTTGATTTGAAATAT
AAAGTCATATAATTGTCTGGgctg

Coding sequence (CDS) from alignment at sc0000054:486954..494427+

>TCONS_00005590 ID=TCONS_00005590|Name=TCONS_00005590|organism=Clytia hemisphaerica|type=CDS|length=2853bp|location=Sequence derived from alignment at sc0000054:486954..494427+ (Clytia hemisphaerica)
atgGATAACCTCGCACCCGCAAACGTGGTTGCGGATTGTGAGAACAGAGA
CTACACTTTGGAAGAAGTTCTCGGACAAGGATCGTACGGAACAGTTTACC
AAGCTTCTTCCAAACGGTTTGATCGTCCTGTTGCTATCAAGATTATCGAC
CCGAAAAAAGCTGGCGAGGGGTATATGGAGTATTATTTACCTAACGAATA
TAAGAGTTTGCTGGCAGTCAAGGGATCACAATATGTGGTACAAATATTAG
ACGTCTTCAGAGGTTCCACAGGAATCGTTTACTTCGTCATGGAGTGCGTC
GAGGACGGTGATCTATATGAATATTTGGAGAATGAGGCTTTGCCTGAAGA
TGAAGCTCAAGACATCTTCAAACAAATCTGCTTGGGGATCAAGCACTGCT
TTGACAGGAATATTGTTCATAGAGATCTCAAGCCTGACAATATTCTTCTT
GCAGAAGATGGCACTTGCAAGTTAACAGattttggctTCGCAAGGAATGT
TGGGGATGGATCGCTCCTTTGGGATCGATGTGGCACCAAGGAGTATATGG
CACCAGAAATCATCAAAGGTGAAGCCTGGTATAATGGAAAAGCATCGGAT
CTTTGGAGCTTAGGGATTATTTTGTACGAATTAGTCACCGGTCAACGTCC
CTTCGACAACGAAGATAACGATAAACTTTTTCTGAAGGAACAGCAATTGG
GCCCAGCATGGCCACCAAGCATGTCTATCGCATGCAAGAACTTGATAACA
TCATTGTTGAATCAAGATCCAGAAAGACGACCGTCAATTGAAATGGTTTT
GAAAAGTCCATGGTTATGTGAATCGAACTTGCCAACAGaaaagAGCACAC
AACATGAAAATGTTTCATACTTACATCGATCAGAAAAAGTTCCTTCTCAT
ATCAGTGATAATGTTGTCAATCAACAGTCAGAGAAATCAGCTGTACCAAT
CACTAAAGCAGGCCACAAACACAAGTTGGAGGATTTCATCGACGTAGACA
AATATGAACAAtccaaattgaaaataaaacgacaaaaaaattcGGACAAG
ATTGGGACAAACCGTCTATATATGGACGCTTTTACTTGGCAGAAAATCAA
CCAACAGATTTGTTGTACAAATCgaataaaatatcattttatcaACGAAA
CAAGCTCAGAATGCAACAGTCATTACAGAATGGCTAGCCAAACCAATATA
GCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAACTAATAA
TCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATAC
CACCCCCAACCAATACTAGTAATCACCAGACGAGATCGGCCAATTCAAAT
AGCAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAG
ATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCTAACTA
ATAATCTCCAGACGAGATCGGCCAGTTCAAATGGCAAGACGCAGCATGGA
ATACCACGCCCAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAG
CAAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGAT
CGGCCAGTTCAAATGGCAAGACGCAGCATGGAATACCACGCCCAACTAAT
AATCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAAT
ACCACCCCCAACTAATAATCACCAGACGAGATCGGCCAGTTCAAATGGCA
AGACGCAGCATGGAATACCACGCCCAACTAATAATCACCAGACGAGATCG
GCCAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAACTAATAA
TCACCAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATAC
CACCCCCAACTAATAATCTCCAGACAAGATCGGCCAATTCAAATGGCAAG
ACGCAGCATGGAATACCACCCCCAACTAATAATCACCAGACGAGATCGGC
CAATTCAAATAGCAAAACACATTATGGAATACCACCCCCAACTAATAATC
ACCAGACGAGATCGGCCAATTCAAATGGCAAGACGCAGCATGGAATACCA
CCCCCAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGCAAAAC
ACATTATGGAATACCACCTGCAACTAATAATCACCAGACGAGATTGGCCA
ATTCAAATAGAAAAACACATTATGGAATACCACCCCCAACTAATAATCAC
CAGACGAGATCGGCCAATTCAAATAGCAAAACACATTATGGAATACCACC
CCCAACTAATAATCACCANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNCAACTAATAATCACCAGACGAGATCGGCCAATTCAAATAGC
AAAACACATTATGGAATACCACCCCCAACTAATAATCACCAGACGAGATC
GGCCAATTCAAATGGCAAGACGCAGCATGGAATACCACGCCCAACTAATA
ATCACGAGATGAATTCAGGCACGTCGCATGGAAACAGGAATGAAGGGATA
GCCGGTCAAACCAACAATCTACctgatataaaaaataaaaacacaaaaaa
taccAACAGAAATTTTATTGCTAGAAAAAAGCAGTttattactttgcttt
tttTCGATAAAAATGTCATTAGAAAATATCGATTTGTTTACATGAAACGA
CAAAAGGACGTCCCTCCGACAGATTTAAGATCAATGATATCAGAACTGGT
ACCAAGCTTGCGTCCAGATAGAAAACCTCCCTGGTATTgtacaaaacaaa
taaaaatcgTCAATTTACACCATCTTGAAATGCAAAAGATTATTGAACTT
TAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003174XLOC_003174Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005590-exon-sc0000054-1491911889:486954..487322TCONS_00005590-exon-sc0000054-1491911889:486954..487322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:486954..487322TCONS_00005590-exon-sc0000054-1510915933:486954..487322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:486954..487322TCONS_00005590-exon-sc0000054-1575043694:486954..487322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:488235..488342TCONS_00005590-exon-sc0000054-1491911889:488235..488342Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:488235..488342TCONS_00005590-exon-sc0000054-1510915933:488235..488342Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:488235..488342TCONS_00005590-exon-sc0000054-1575043694:488235..488342Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:489219..489403TCONS_00005590-exon-sc0000054-1491911889:489219..489403Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:489219..489403TCONS_00005590-exon-sc0000054-1510915933:489219..489403Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:489219..489403TCONS_00005590-exon-sc0000054-1575043694:489219..489403Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:489802..489857TCONS_00005590-exon-sc0000054-1491911889:489802..489857Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:489802..489857TCONS_00005590-exon-sc0000054-1510915933:489802..489857Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:489802..489857TCONS_00005590-exon-sc0000054-1575043694:489802..489857Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:490123..490255TCONS_00005590-exon-sc0000054-1491911889:490123..490255Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:490123..490255TCONS_00005590-exon-sc0000054-1510915933:490123..490255Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:490123..490255TCONS_00005590-exon-sc0000054-1575043694:490123..490255Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:491204..491322TCONS_00005590-exon-sc0000054-1491911889:491204..491322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:491204..491322TCONS_00005590-exon-sc0000054-1510915933:491204..491322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:491204..491322TCONS_00005590-exon-sc0000054-1575043694:491204..491322Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:491662..491774TCONS_00005590-exon-sc0000054-1491911889:491662..491774Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:491662..491774TCONS_00005590-exon-sc0000054-1510915933:491662..491774Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:491662..491774TCONS_00005590-exon-sc0000054-1575043694:491662..491774Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1491911889:492289..494427TCONS_00005590-exon-sc0000054-1491911889:492289..494427Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1510915933:492289..494427TCONS_00005590-exon-sc0000054-1510915933:492289..494427Clytia hemisphaericaexon
TCONS_00005590-exon-sc0000054-1575043694:492289..494427TCONS_00005590-exon-sc0000054-1575043694:492289..494427Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005590-proteinTCONS_00005590-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:486954..494427 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.131677	0.126306	0.0799928	0.0260868	0.0476373	0.0644158	0.030277	0.0992072	0.0209679	0.0614529	0.0238591	0.023526	0.289751	0.203317	0.0426476	0.050227	0.0441968	0.0271802	0.763535	0.628709	0.136616	0.149932	0.0675043	0.355953	0.151706	0.270788	0.0161457	0	0.0261384	0.0266309
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000719Prot_kinase_dom
IPR017441Protein_kinase_ATP_BS
IPR008271Ser/Thr_kinase_AS
IPR011009Kinase-like_dom
Vocabulary: Molecular Function
TermDefinition
GO:0004672protein kinase activity
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006468protein phosphorylation
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006468 protein phosphorylation
molecular_function GO:0005524 ATP binding
molecular_function GO:0004672 protein kinase activity
Blast
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BLAST of TCONS_00005590 vs. Swiss-Prot (Human)
Match: TSSK1 (Testis-specific serine/threonine-protein kinase 1 OS=Homo sapiens GN=TSSK1B PE=1 SV=1)

HSP 1 Score: 178.333 bits (451), Expect = 2.925e-48
Identity = 107/271 (39.48%), Postives = 157/271 (57.93%), Query Frame = 1 
Query:  268 VADCENRDYTLEEVLGQGSYGTVYQASSKRFDRPVAIKIIDPKKAGEGYMEYYLPNEYKSLLAVKGSQYVVQILDVFRGSTGIVYFVMECVEDGDLYEYLENE-ALPEDEAQDIFKQICLGIKHCFDRNIVHRDLKPDNILLAEDGTCKLTDFGFAR-----NVGDGSLLWDRCGTKEYMAPEIIKGEAWYNGKASDLWSLGIILYELVTGQRPFDNEDNDKLFLKEQQLGPAWPPS--MSIACKNLITSLLNQDPERRPSIEMVLKSPWL 1056
             A  + R Y L   LG+GSY  V  A S+R    VAIKIID KKA   ++E +LP E + +LA+     +++  ++F  S G VY VME    GDL E ++   AL EDEA+  F Q+ L IK+C D ++VHRDLK DN+LL +D   KL+DF F++     + G  +L    CG+  Y APE+++G   Y  K  D+WSLG+ILY +V G  P+D+ +  K+   +++    +P S  ++  CK+LI  +L  D  RR  I+ +L   W+
Sbjct:    4 AAVLKRRGYLLGINLGEGSYAKVKSAYSERLKFNVAIKIIDRKKAPADFLEKFLPREIE-ILAMLNHCSIIKTYEIFETSHGKVYIVMELAVQGDLLELIKTRGALHEDEARKKFHQLSLAIKYCHDLDVVHRDLKCDNLLLDKDFNIKLSDFSFSKRCLRDDSGRMALSKTFCGSPAYAAPEVLQG-IPYQPKVYDIWSLGVILYIMVCGSMPYDDSNIKKMLRIQKEHRVNFPRSKHLTGECKDLIYHMLQPDVNRRLHIDEILSHCWM 272
The following BLAST results are available for this feature:
BLAST of TCONS_00005590 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TSSK12.925e-4839.48Testis-specific serine/threonine-protein kinase 1 ... [more]
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