TCONS_00005593 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005593
Unique NameTCONS_00005593
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length826

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005593 ID=TCONS_00005593|Name=TCONS_00005593|organism=Clytia hemisphaerica|type=transcript|length=826bp
TTTCAGTCTATCATCTCACAAGaataagaatcaaaacaaagtggGACATA
CTGAAGGTTCACACATCCATAGTACAGAATGATGAAGGTGATATTAGCTT
GCCTGCTAGTCATCCAGACGGTATCATGTTTACCagcaatgacgtcatca
atggccATGACGTCAGATGGGGCATGCGCAGATGAGCGAAGTATTTATTG
TATGTTCATGAGAACATGTTTTGTCAGTACTTTTTTGCAAAGATGTGAAA
CAGAAAGCTATTTGAGAGATGTATGTGCAAAATCTTGCAACCAATGCAAA
GTTGAATGCGTGAACAAGTTATCAATGTGTCCAAGCTACTCTGGCATGTG
CATGGACCCTTATTTTGGAACACTTTATCAGAAGATGTGCCCAGTGACTT
GTGGCACGTGCGAAGGAGTCCTTCCAGCAACTGACAAAACAACGACCACC
GACTATTACACAACGACCACCgaaaaacaaacaacaacaaccgAAGAAAC
AACAACCACAGCAACGACCACCGACCCCACCACAACGACCGACTACAAGA
CCACTACCGACCCCACCACAACGACCGAGCCAATCACGACTACTGAAGAA
ACAACAACGACGGCAACGACCACCGACGACACCACAACCACCGATTATTA
TACAACCACTGAAGAAAAAACTACAACCACCGACGAAACAACAACCACCG
ACTATTACACGACCACTGAAGAAAAAACTACGACCACCGACGAGACAACA
ACAACGGCAACGACCACCGACGACACAACAACCACCGATTATTATACGAC
CACCGACGAGACAACAACAACGGCAA
Run BLAST on NCBI

protein sequence of TCONS_00005593-protein

>TCONS_00005593-protein ID=TCONS_00005593-protein|Name=TCONS_00005593-protein|organism=Clytia hemisphaerica|type=polypeptide|length=249bp
MMKVILACLLVIQTVSCLPAMTSSMAMTSDGACADERSIYCMFMRTCFVS
TFLQRCETESYLRDVCAKSCNQCKVECVNKLSMCPSYSGMCMDPYFGTLY
QKMCPVTCGTCEGVLPATDKTTTTDYYTTTTEKQTTTTEETTTTATTTDP
TTTTDYKTTTDPTTTTEPITTTEETTTTATTTDDTTTTDYYTTTEEKTTT
TDETTTTDYYTTTEEKTTTTDETTTTATTTDDTTTTDYYTTTDETTTTA
Run BLAST on NCBI

transcript from alignment at sc0000054:573980..576118+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005593 ID=TCONS_00005593|Name=TCONS_00005593|organism=Clytia hemisphaerica|type=transcript|length=2139bp|location=Sequence derived from alignment at sc0000054:573980..576118+ (Clytia hemisphaerica)
TTTCAGTCTATCATCTCACAAGaataagaatcaaaacaaagtggGACATA
CTGAAGGTAAGAGTTTTGCTTTCTTGGaggatttgaaaattttctagtTC
ATTATATGGTGAAGTATATTCGCGATGGTGTTATTGAGATTTTATTTAAG
GAGGCAAGCAATCGCATTATGCTTGAATTTGTCAATTTAGATAATCGAGC
CTAAAGTTATTAAACTTANTTGAAAATTTTCTACTTCATTATATGGTGAA
GTATATTCGCGATGGTGTTATTGAGATTTTATTTAAGGAGGCAAGCAATC
GCATTATGCTTGAATTTGTCAATTTAGATAGTCGAGCCTAAAGTTattaa
actttatcaaaaatcaATGCTTTACTTTTGCTTTAGAATACATATAATTG
GAGATAAAACCTCGCCGGAAAGATTTTGTAAGGAGGGGTGGGGACTCAAA
GGCGCAAATCTTAAAACTTCTATCttacttgagaaaggttgaagattcat
ctctagcTCTTTCGGGGCTTTGAACTCAATGCTATTACACTCTTATGAAA
GAGTACCtaaacatttaaaaccaaaCGATCTCAAATCACACTTACCGTTT
CCTTTATAGGTTCACACATCCATAGTACAGAATGATGAAGGTGATATTAG
CTTGCCTGCTAGTCATCCAGACGGTATCATGTTTACCagcaatgacgtca
tcaatggccATGACGTCAGATGGGGCATGCGCAGATGAGCGAAGTATTTA
TTGTATGTTCATGAGAACATGTTTTGTCAGTACTTTTTTGCAAAGATGTG
AAACAGAAAGCTATTTGAGAGATGTATGTGCAAAATCTTGCAACCAATGC
AAAGGTAAGACACCAAATTCTCATTAATTTACACAATATTTTCAATTACC
TTAAGTAAAACTTTTTTCACGAATCGAGCTTCTAAAATTTTCCCGTGTAC
AAAATTTCGCGAGGATTAATTTTCTTGTTAAAAATgcccaaaattttgaa
aattgcgAAAATCAATACAATCGAAATTTAGTTCACTTAAGGTAAAACAT
TGTGGCTCAAAAGTATCAAACAAAAGCGACCGTAGTANGTGCTGTATAGC
ACTTTATGGGGTCGGAGAGGCCTTAAGTAGGTCATTGTTGCCATTGAGAT
ATAAgtacaggataagaacaatttgaagcTTAAAATACCAGAAATAAGAA
TAACCAAACCTAAAGCAATCTTTACAAAAAGAGTGTACATTAATGTTAGG
TGTACTGGCTGACTACTCTATTCTAAACTATCACAAACACGAATTCAAGA
TAATTTGCAACGAACCTAACCGAACTATTTTTCACCACTATCTTTATTTA
CCCTTTCAGTTGAATGCGTGAACAAGTTATCAATGTGTCCAAGCTACTCT
GGCATGTGCATGGACCCTTATTTTGGAACACTTTATCAGAAGATGTGCCC
AGTGACTTGTGGCACGTGCGAAGGAGTCCGTAAGTTggctttttaaatat
ttcttgtaagagaacaaataaaaatgtttagtAAGATAAATATAAATCTT
CAACCTTTTAAAAGCGCATCCTTAGCATTTGCACTTCATTTTTAACGACG
GAATTTGTATAGTTCTTTGTTTGAGAAATTTGTTGGTAAAAGTTATCTTC
AATATGGCGTTTATGTGACTACCACGTAGGCATCAAAACTATAATACGTT
GGAGATAAAGACTAGACATTATTTTGTCGTTTAGTTCCAGCAACTGACAA
AACAACGACCACCGACTATTACACAACGACCACCgaaaaacaaacaacaa
caaccgAAGAAACAACAACCACAGCAACGACCACCGACCCCACCACAACG
ACCGACTACAAGACCACTACCGACCCCACCACAACGACCGAGCCAATCAC
GACTACTGAAGAAACAACAACGACGGCAACGACCACCGACGACACCACAA
CCACCGATTATTATACAACCACTGAAGAAAAAACTACAACCACCGACGAA
ACAACAACCACCGACTATTACACGACCACTGAAGAAAAAACTACGACCAC
CGACGAGACAACAACAACGGCAACGACCACCGACGACACAACAACCACCG
ATTATTATACGACCACCGACGAGACAACAACAACGGCAA

Coding sequence (CDS) from alignment at sc0000054:573980..576118+

>TCONS_00005593 ID=TCONS_00005593|Name=TCONS_00005593|organism=Clytia hemisphaerica|type=CDS|length=747bp|location=Sequence derived from alignment at sc0000054:573980..576118+ (Clytia hemisphaerica)
ATGATGAAGGTGATATTAGCTTGCCTGCTAGTCATCCAGACGGTATCATG
TTTACCagcaatgacgtcatcaatggccATGACGTCAGATGGGGCATGCG
CAGATGAGCGAAGTATTTATTGTATGTTCATGAGAACATGTTTTGTCAGT
ACTTTTTTGCAAAGATGTGAAACAGAAAGCTATTTGAGAGATGTATGTGC
AAAATCTTGCAACCAATGCAAAGTTGAATGCGTGAACAAGTTATCAATGT
GTCCAAGCTACTCTGGCATGTGCATGGACCCTTATTTTGGAACACTTTAT
CAGAAGATGTGCCCAGTGACTTGTGGCACGTGCGAAGGAGTCCTTCCAGC
AACTGACAAAACAACGACCACCGACTATTACACAACGACCACCgaaaaac
aaacaacaacaaccgAAGAAACAACAACCACAGCAACGACCACCGACCCC
ACCACAACGACCGACTACAAGACCACTACCGACCCCACCACAACGACCGA
GCCAATCACGACTACTGAAGAAACAACAACGACGGCAACGACCACCGACG
ACACCACAACCACCGATTATTATACAACCACTGAAGAAAAAACTACAACC
ACCGACGAAACAACAACCACCGACTATTACACGACCACTGAAGAAAAAAC
TACGACCACCGACGAGACAACAACAACGGCAACGACCACCGACGACACAA
CAACCACCGATTATTATACGACCACCGACGAGACAACAACAACGGCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003177XLOC_003177Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005593-proteinTCONS_00005593-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005593-exon-sc0000054-1491911889:573980..574035TCONS_00005593-exon-sc0000054-1491911889:573980..574035Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1510915933:573980..574035TCONS_00005593-exon-sc0000054-1510915933:573980..574035Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1575043694:573980..574035TCONS_00005593-exon-sc0000054-1575043694:573980..574035Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1491911889:574589..574833TCONS_00005593-exon-sc0000054-1491911889:574589..574833Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1510915933:574589..574833TCONS_00005593-exon-sc0000054-1510915933:574589..574833Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1575043694:574589..574833TCONS_00005593-exon-sc0000054-1575043694:574589..574833Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1491911889:575339..575458TCONS_00005593-exon-sc0000054-1491911889:575339..575458Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1510915933:575339..575458TCONS_00005593-exon-sc0000054-1510915933:575339..575458Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1575043694:575339..575458TCONS_00005593-exon-sc0000054-1575043694:575339..575458Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1491911889:575714..576118TCONS_00005593-exon-sc0000054-1491911889:575714..576118Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1510915933:575714..576118TCONS_00005593-exon-sc0000054-1510915933:575714..576118Clytia hemisphaericaexon
TCONS_00005593-exon-sc0000054-1575043694:575714..576118TCONS_00005593-exon-sc0000054-1575043694:575714..576118Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:573980..576118 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0575004	0.112144	0	0	0.31017	0.183825	0.961036	1.24575	2.51963	3.18099	8.56357	7.23774	2.60044	14.4163	5.0282	17.4845	0.0863307	0.0442431	0.244497	0.0639621	0.111189	0	0	0.0599389	0.0617356	0.0550976	0.0788445	0	0.063821	0.0650235
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR003582ShKT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005593 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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