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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005597 ID=TCONS_00005597|Name=TCONS_00005597|organism=Clytia hemisphaerica|type=transcript|length=1048bp
cgataatattatattttgttGGCGTGGTAACGGGGAAATGTTCGTCTAAG
ATTCCTGAAAACAATCATGGTGTTGGATCAGTCACTATTATTGATGAAGT
TGAGACGTTGACACAGAACAAAGTAAAATATTTGGTTCAAAGAACTTCAA
CAGAGTGGAGTTtagaattcaaatttcaaattaatgaaGATCATAGTGGA
AGTAGTGTGTGTTCGATCATTCGCGTGGCTACAGGTAGAAATAATGATTT
TCATGATTATGGCTCTCGCATTCCTGCTATTTTATACAACTCCGGCTGGA
AACAAGTGGTTTCTTACTGGGATTTAAATGGTGTCTCGGTTGGTGTCTTT
CATAGACAGGATGTCAAACTGGGAGTTAACTATCATGTCAAATACCAACA
ACAATACATAAAAAGTGGTGTTTACAAAGCTTCACTCGAAATCGATGGAG
TGGAAGTCGAACGCATGTTAAATACTCAAGCCGAACAATTTTACGATGTG
AAATTTTACATTGCGGACCCATGGTATCCCGTCTGCGTTGGTTCGGTAAG
CGATGTCAAATTCACCaactttttgtaactttttgtaACTTTCTATaact
ttttgtaactttttgtaacttattttaattattttgcaaatttccagcac
ttttcttctattttttttatatcaaaCTAAAAGCTGGTTCGgttaaagat
gtcaagttcaccaaccttttgtaattttttattatcattttgcaaatttt
cagcACTTTTCCTCTTGTATTCTTATATCAAAGCTAAAAGTTTGTTATGA
GATTATCAttttaatggtggaaggagggtAAACAATAATGTCAtcactgc
ggacaaggcttgaaCATGAGAAATCGGTAAAAATCAGTCAGGTTGTtaat
ccagtgtctataataattcaagcactttttcttttgtattcttAAATCAA
AGCTAGAAGTTGGTTCGgttaaagatgtcaagttcaccaaccttttgtaa
ttttttattatcattttgcaaattttcagcACTTTCCTCTTGTATTCT Run BLAST on NCBI transcript from alignment at sc0000054:617240..619953+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005597 ID=TCONS_00005597|Name=TCONS_00005597|organism=Clytia hemisphaerica|type=transcript|length=2714bp|location=Sequence derived from alignment at sc0000054:617240..619953+ (Clytia hemisphaerica)
cgataatattatattttgttGGCGTGGTAACGGGGAAATGTTCGTCTAAG
GTAAGGTTTATTGTTTGGTTTTAAATCAATTTATAAAAGAGGAAATGAAC
AAACAGATCTTTTATAGTGATATATTGATGTCAGTGTCATTTCGACTTGA
CGACATAACAGCGCgatagctgtcaacttcgctTCACAAAAATGCGGAGA
TGCTCCAAgtcggaaaatcgggaaatcaggGGAATTTTCTCGCAAAATCC
GATTttatgggaaattttttttcgggaaatcGGACAAATCGGGGAATTTT
TCGTcccaattttcaaaagtcaggaaattttgccattccgttttttcaaa
attagatttttttttcaggaaatcgaaaaaatttttggaaatgatgGCAT
CATGGAATTTAACAACTGatcctaagaatgccattttttaagcattttca
cCTGTAAATTGGCAATAATACCCCAGTGACGCTCAATATTTTGTGTGTAT
TACATGTTAAATCTAAGTTAAATTttgatcttaacctaagaatactgcaa
gaatattttaggacaattttcgccaaaaagttaagaatatcccataatga
aaagaaaaaacaccattcttataaaaaatcgtgcACACACCagacatctt
ttttttttaaattgacttTTGGTTTTGTTTCTCCGCTAGATTCCTGAAAA
CAATCATGGTGTTGGATCAGTCACTATTATTGATGAAGGTTTGTAAATCT
ATTTTATTATAATCTACaaataatatattttattaTGAGGACTGGCTACT
GCTTCACAGAGGATACCTTCATGTCCTGTATAGAGTGGTCCAAGAATCGT
CTCGCTAGAATTGTCTTATGGTTTACATACTGcttacttacttacttctt
TGGGTTTAAGTGCATTAATCCGGCGTGAACCATTAGGGGACACGGCCAGT
GCACTTTCTCCTCATCCAAGGTGTATTGTAGCATAGATAATACCTACCTT
ATCGCCCAAAACTttgtcggccctaagtgactaaattttgacgaggtaac
taaaattagggctgaccaataattaaggccgactaaaattaaggccgacg
aAGTTTTGGCTGATAAGGTATAACAGCCTCCGACAGGCTTTTTGATGGAA
TAGCCCGGACGAAAACACATTCACTTGCTTANGCCAGTGCACTTTCTCCT
CATCCAAGGTGTATTTTAGCATAGATAATACCTACCTTATCGCCctaaac
ttagtcggccctaagtgactaaattttggcttggtgactaaaattaggac
tgactaataattaaggccgactaaaattaaggccgactaaaattaaggcc
gactaagttttggctgaTAAGGTATAACAGCCACCGACAGGCTTTTTGAT
GGAATAGCCCGGGCGAAAACACATTCACTTGCTTGGCAAGTGAACCACAG
CACCGAGTAGGAAATAGACACCGACCTCCTAGATCCCCATTACACTACGG
CGGATATTATTTAGAAATCATACAACGTGTTTAGAAAAATGCGGGACAAA
TTTATTGAAAAGCAAAATCCTCAGAACTCACTTTCTCAATGGAAAAAata
atcaattcaaaatttaattaaaatgtgtttttgaaaattaaacattAAAT
ATTATTAGGTTATAAAAGAACGATCTGCTTTTCTGATCCTACTGGACACA
ATGAAATTGGCTCAGTGAAAATGACCCAaaattgaaatgtaatcttTTAT
TTTCTAACTATTTAGTTGAGACGTTGACACAGAACAAAGTAAAATATTTG
GTTCAAAGAACTTCAACAGAGTGGAGTTtagaattcaaatttcaaattaa
tgaaGATCATAGTGGAAGTAGTGTGTGTTCGATCATTCGCGTGGCTACAG
GTAGAAATAATGATTTTCATGATTATGGCTCTCGCATTCCTGCTATTTTA
TACAACTCCGGCTGGAAACAAGTGGTTTCTTACTGGGATTTAAATGGTGT
CTCGGTTGGTGTCTTTCATAGACAGGATGTCAAACTGGGAGTTAACTATC
ATGTCAAATACCAACAACAATACATAAAAAGTGGTGTTTACAAAGCTTCA
CTCGAAATCGATGGAGTGGAAGTCGAACGCATGTTAAATACTCAAGCCGA
ACAATTTTACGATGTGAAATTTTACATTGCGGACCCATGGTATCCCGTCT
GCGTTGGTTCGGTAAGCGATGTCAAATTCACCaactttttgtaacttttt
gtaACTTTCTATaactttttgtaactttttgtaacttattttaattattt
tgcaaatttccagcacttttcttctattttttttatatcaaaCTAAAAGC
TGGTTCGgttaaagatgtcaagttcaccaaccttttgtaattttttatta
tcattttgcaaattttcagcACTTTTCCTCTTGTATTCTTATATCAAAGC
TAAAAGTTTGTTATGAGATTATCAttttaatggtggaaggagggtAAACA
ATAATGTCAtcactgcggacaaggcttgaaCATGAGAAATCGGTAAAAAT
CAGTCAGGTTGTtaatccagtgtctataataattcaagcactttttcttt
tgtattcttAAATCAAAGCTAGAAGTTGGTTCGgttaaagatgtcaagtt
caccaaccttttgtaattttttattatcattttgcaaattttcagcACTT
TCCTCTTGTATTCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005597-exon-sc0000054-1491911889:617240..617289 | TCONS_00005597-exon-sc0000054-1491911889:617240..617289 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1510915933:617240..617289 | TCONS_00005597-exon-sc0000054-1510915933:617240..617289 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1575043694:617240..617289 | TCONS_00005597-exon-sc0000054-1575043694:617240..617289 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1491911889:617929..617977 | TCONS_00005597-exon-sc0000054-1491911889:617929..617977 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1510915933:617929..617977 | TCONS_00005597-exon-sc0000054-1510915933:617929..617977 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1575043694:617929..617977 | TCONS_00005597-exon-sc0000054-1575043694:617929..617977 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1491911889:619005..619953 | TCONS_00005597-exon-sc0000054-1491911889:619005..619953 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1510915933:619005..619953 | TCONS_00005597-exon-sc0000054-1510915933:619005..619953 | Clytia hemisphaerica | exon |
| TCONS_00005597-exon-sc0000054-1575043694:619005..619953 | TCONS_00005597-exon-sc0000054-1575043694:619005..619953 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:617240..619953 + |
Blast
The following BLAST results are available for this feature:
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