TCONS_00005599 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005599
Unique Name	TCONS_00005599
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2930

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000054:652268..659337+

transcript sequence

>TCONS_00005599 ID=TCONS_00005599|Name=TCONS_00005599|organism=Clytia hemisphaerica|type=transcript|length=2930bp
gtaaaattaaaaaaaataaactccCGAAAATCATCATattgattgaaata
tttgaaatagTGGAAGAAATAGTTCTTAACAAAAGAAATCCGTTGGAAAG
ACTTGCATAAGTGGAACTTTTGAGACGAAATGATTCGACGTTGTTCTACA
CGGCGGAAAAGAAATCCCGAGGCTGGTATCATTCATCAAGCTATACAAAA
GTTGAATGATGAGCAAATTCAAGAATATAAAGAAGCCTTCCTGGAAGTGG
ACAAAGACAACAATGGAAAGATTTCCACAAGAGAATTAAAGAACTTGCTG
AGATCGTTGGGTTGCAATCCTACAGATCTGGAAATACAAGAAATTATCAA
CGAAGTGGACGCTAATGGTAATGGAACAATCGACTTTCCGGAGTTTATTA
ATCTAatgaaaaagatgacaaaaCCAAGCGAAGATCATGCAAGTACATTG
GATGCATTTCGTGTATTTGATAACATGGAGAAAGGAAATATCAGTAGTAA
ATGCATTCGTGAAATCATGATCAAATCATTAGATCCAATACCTCAAACGG
AGATTGAAGATTTACTGGCTAGTTTAGGGTTGTCATCTGATAGGGTTATA
TCTTACGAAGaaTTTTCGAAGTTCGTAAGTCCACCCGACATTTCAACAGT
GACGACGCAACATCAAAAGATAACGTCATCAACTACTAGAAACGGtaata
ataaatattttcacGAAGGGCCACCAAAAATTACGATCGAAACGTCCTCA
ATTTGACCCCGCATAGCTAAGAATCTAATATACACCAGATGGAATTAACT
GTAACTAATCATGGAGGAACAAAGATTGTGGGGTTTTCAAAATAACGATA
TCGGCATCCCTGTTCTCTGGCATATTGTTGATTTTCTATGCTCAATGATG
GTGTCAAATAAAACCCTTCTCTGGTGTCGTATATAGAAACCTTATTCTGG
CATTCATCAGCAACGTACTGGCAACACAACTCATCACATCCACCCATTGA
ACTTTACATGTCTTGGACCAAGCTATCCCCCATCTTTTTTCAGAgtattt
tgaaattggtacccaaATTGTAGCACTACTCAATGTGGTTCAATTTGTCC
TTGCTGGCAACACAACCCATCACTAAATCTACCCATTGAAACAACTGGCC
TATAAACATGTTTTCGACATTCATCTGTGATTATATCCATGTTGCGGGCG
GTCGTCAAATGAATGTCCTTGGATATTTGAAAGAAGTTGAAAAATCGAAC
GTTTACATTATTGAACAAACTTTCTTGGTAGGAGCTAAACGATAGCTCGT
CTATGCATACAAAACAATAACTCCattaaaattgaccaaaaaaatcacga
tttttgaAGTCTTGTAAAAAAAGATGCCGTTATTAAAGACAGGAAGAACT
AACTAGGTTGCtgtttattaaaaatttaatgattgaaTGATTTTATAGTC
TATCCAGTAAAGATAATACAATAgatataaatatttttggttaaGATTTT
TTGTAATTATGCTTACTAACGAACCGTTTtaatattatttcaaaaaagaa
tatTGATTAGTGTTGTTAACACCCTGAGGGTGTTGCAAAATGGTTTGCAA
AATGACGGGGGTATCAAcccatttttgaaaatcggaatTTTTAGGTTCTA
AAAGTCGAGGAAAAAACCtgaaattttgttaattttgggGCCCTTACCGG
GActtctttctcaaaatttaaagtttttggttgttttttgtaACCTTTAG
AGGGGCTGACATAAGATATTGTGATTTTTATGACCTTTAGAAGGACTTCG
AAAGATAGGTATTGAAATGAAAGAAAGGCGACTACTGATCANTATGATTT
TTACGACCTTTAGAGGGACTTCGAAAGATAGGTATTGAAATGAAAGAGAA
GTGACTACAGATCGTCACCAATATTTCAAAGTTACTACAGAGCAATGACA
ATCAATAGCCGATATCACCAGTCAAGTTATGATATGACGAATCACCATTT
AAAGTAGTTTGTTGCATCCTGTTGTTTTGTCGTATCTTGATGACCAGCGC
AACAGCCAACAAAATACCCACCACTTCCAAGACCACAATCCAAACAGCAA
AACCACCAATGATGTGTATATTCTCAAAAAGGTATTTCTTGACATCTTCA
TAACAACCTTCAGTAAAAATGGTCTCTAATTTCTTATCAAcatttttgtt
acaatttttcatGCGTGGAATGACACAGCAAGATGTCGGTACACTGTAAT
TACCGTCATATTGATTCCACCATGTTGTCTCAACCCAATCCCCGTATCCA
TCGTTACCACAACAATGGAATTCACGTTGTAGTGCATCGATCGCTGTTGT
GATCCTTTCATTACTAGGTATGCCATATTGattcaatgttttttgaaaat
ccattTTCAGACTTTTCTCAATAGGAACTCGAAAAGAATAAACCAGGATT
ATAAGTCCTAACTCGGTTGCCGTAATAACGATCAAAACAACCAGGTATAA
TATAAGAAGCACCAAATTATTACGCCTCGATCCAAAACAAGCCATAAAAG
AAAGTAACAAAGTCACGGAACCGACAACTAACAAAATGATGGGTCCATTT
AAATAGCCTTGAAGTCCagagatttttgtaaaatcattaCTAGCCTCGTT
TCGTGTGGTATGTAGAACAGCGGCTAAGAACAAGACTAGAAAGCCGACCA
TCCAGAATAAGAGATTGTAAACGAAGAATGTAGTTCTGATGCATCTGAAG
CCACATTCACCAACGTTCATCACCATATTCTGTAGGTAGGTTTGTTTCTC
TTGTGAATGATTCTGATGTCTATCATCTCGGTCATCGTTGTAATCAAAAT
CATTCGTAAATCGTGAGAATTCTTGGAATCCCATATTTTTCGTTCATTAT
TTTTAATACTTGAAAATACGTAGATAAACA

Run BLAST on NCBI

transcript from alignment at sc0000054:652268..659337+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005599 ID=TCONS_00005599|Name=TCONS_00005599|organism=Clytia hemisphaerica|type=transcript|length=7070bp|location=Sequence derived from alignment at sc0000054:652268..659337+ (Clytia hemisphaerica)
gtaaaattaaaaaaaataaactccCGAAAATCATCATattgattgaaata
tttgaaatagTGGAAGAAATAGTTCTTAACAAAAGAAATCCGTTGGAAAG
ACTTGCATAAGTGGAACTTTTGAGACGAAATGATTCGACGTTGTTCTACA
CGGCGGAAAAGAAATCCCGAGGCTGGTATCATTCATCAAGCTATAGTAAG
TCAAAGTtataaaacatgtttttttataagaacatccaaaatttttgaag
tctttggatgttcttaaaatgcttttattttcaccatttcgtgagttttt
tgtctattttcctaagaattcGGGTGTTTCTTAGAGTCTGCTAAGTCTTA
AAAACtcttcttaacatgttcttaatattttagccttATGTTCCTATAAA
AATTGTTCCTGTAAAAAAAACGTGAAGGGATCTGGCTCTGGCTGGTTCAC
TGAAGGTTTCTtttcaaaaacgaaaaaatggCTGCCTGGAGTTTTATCGA
AGCTTTAATTTCAGAGACACCTTCTGAAGTTATGCTTGAAAAATCTCTGG
ATTGTGCACCAATCGAATCAgaatcgaaaaatgaaaaaatgaaaggaaAA
GCAAGCAAACACAACTCCTGTAGCCAANTGTGCACCAATCGACACAgaat
cgaaaaatgaaaaaatgaaaggaaaatcaagcaaacaaCTCCTGTTTTGG
CCATTAGAAGTATCATTTGTGTTTTAAACCCTCCACTACAAATTTTCTTG
TTGTTGGAAgagaattaattatttttgtttttaggtttttggacaatttt
tcttCAACTTCAATTTCGTATACCTTTTCATTTTAGCAAAAGTTGAATGA
TGAGCAAATTCAAGGTATGTTTTATTGAATTAACTTTTCAGAGACGGCTA
AAAAACtgactacatgttttttttaaaagcaAGTGTCTACCCCTTTACTT
AGACAGGAGAACCCGTCTTCGTATTCAAATCTGATGtatacttgacgggt
cagagctgtTAGTCCATTTTCAGACTCAAAAATAAAATAGCTTATTTTCT
CGTTGGACTCACCTCTTGCCGAGGAAAAAAGtttactttactttactttt
aataaattttgttcCGAAAGTGTGACCACCGGCAAAAAGAAGTGTTTTGA
TTGGCAGATTTTTATCGACGGTTTTTTGGTgggaaatttaaaacttttaa
attactAGCCCTGACCATGCtattcatttcgccatcagtatataaataGG
ATTTCCAGGCTACCCCTTTACCAGGCTCgtattatgcttagcattatatt
gttctcaaacaatagagccattgtttaggtagcaaaaactgagcctgcat
atgcttataaacgttatgcttataaaagaaaaatcatgtATATGGACCAT
ATTTTACAGTGAATTTCGCCTCCATAGAAAAAGATTAAAAGTTACCACAA
TTCACAAAAATACTGGCCTggatatcaaaaatataaatcaTTTTCTTACT
TTGATGTTTTAGCTAGTTGGTCTAATAGATGCTTTTAAACCCAGGGTCGG
TAAATTTTTAGCTTCACGCAATAATTGAATCAAAAACGTAGACATGCGTT
GCCTTGTGATATTGGAATGCAAGTAAGACCAGTCAGTAAaccagaaacat
caaaaataaaagtttacagcctggatatccaggctacagaAATACCTCTG
AAAATGATTAGAATCCAAAATGTTTATCGAAAATTGACTCCGAAGGAATC
TAAAACAGCGATGCTTAAAGTTCCGTCGCCGAGGTTCAAATCTAaggaat
ttattttcaaataagagtgatatcgtttgcttactcatcaaatataattt
acaaactttttcaaattgaattaaaggttttgtttttacataagtgttcc
cgtttcatatcagacacatatttcatatcgggacagtgtcCACCTACACg
cctttttttttataagaatggtgtaaatccatttcatcatggatattctt
aacttttttgggaaaatcatcctaaaatattcttacatcaCATTCTTAGG
TTATGAACCTAATTcctactagatttaacatttagtacatacgtctcaag
cataaaatggcacttttgtaaaaggagtgagcctaacttggggTTAAtag
ataatttataattgaaagtgctttaaaaatggcattcttagctttatTAG
GATagttccatgatggtgatattcttagcatattcttagttctTTGGCCA
TTTCCACCATAGACATtctataaagtgtattcttataaaaaaaagggtGT
ATgcagaaagaaacaaaaaattgtttttcttttcatctttctgatcaatc
ttgctccacatccgtgtcaatccaatgtgaaaaagcttgtgaattaaaat
tgatgagtaagccaATGATGTCActctatttaaaaaacaaaacctttaac
acggatgtggagcaagattagtcagaaagaggaaaagaaaaacaattttt
tgtttctttctgcataatataataataggcagacactgtcctgatatgaa
atatgtgtctgatatgaaacgggaacacttatgtaaaaataaaaccttta
attcatgatattcatgacgtattgttttctacagaaatacctggttttag
ccagtagtggcaaatttaaactagacaaaagttgtataaaatttgccact
acagGATAAAACCgaggtctttccgtagaaaacattacgtcatgaatatc
atgaatagaagaTCCTTCTATAATACGGTACTTCCTTCTTTATCCAAGAA
TATAAAGAAGCCTTCCTGGAAGTGGACAAAGACAACAATGGAAAGATTTC
CACAAGAGAATTAAAGAACTTGCTGAGATCGTTGGGTTGCAATCCTACAG
ATCTGGAAATACAAGAAATTATCAACGAAGTGGACGCTAATGGTATATTT
GCAATATCTTTTTTTGTGTACTATAAATTCTATTTTCAACCAATCCTCGA
GTACTTTAATGTCATTTTCgccattttctaaaaaataaccaattgctgat
tcgcaaaattaaattcccgcgaaaaagaaatcaaaaaaaacttcaaatct
gcgaaatctttctattttttcaagCTGCTTATTTATCAAAAGCgttctaa
ttttttttgcaaggaACTCTGAACAACCATCAACAATTGATAGGTAAATA
AATCGTCAGTCCCATAAAAGTTTCCACTTTTTGTTTTATGGGTTTTAAGA
TCAAGAAATTCCATTGTAACTTTTCTGGTCATTTATGCATTATTTTATTA
ggtttttctagaaaaaaatcgtATACCCCTGTTGGGTTCGACCCTTTATG
GCTAGAAATGCTGTcgccccctggaattccaggcaattttaggtttaaaa
cccTACTATGGGAGTCTGAATTTTTGAAGTTACCCCCACCGAATTCTact
tttttgacatatttttgtaTATACCTCGCCCTCTTGGAACGGCAATGGAA
ACCGGGTGTATAcggttttttctgaaaaagcccattGTTACATtggttaa
agggataatcagatggtttgagaaaTTTGGCATGTGTAATCTttctattg
tcctgagcaaaaactcaaaatattttttcctgaatattttcaaaagtcga
gatatctaaattacaagtttttatttttagtaagaaaacaatagaatttc
aacgtaagaactgTGTGAGAAcctattttcagaaatttcaaattttgata
tctcgactttggaaaattgttacacaGATATACTTTGCGGTTTAAATCGA
GCCCACGTACGCTTTCTGcaggccaaatatctcaaaccatctgataatcc
ctttaagAAGGAAAGAACCATATAAAAACATTCTGTTGGAAAATAATTTA
GCTCTTCCATTCAAAATTCTACTTTGTCTAGGTAATGGAACAATCGACTT
TCCGGAGTTTATTAATCTAatgaaaaagatgacaaaaCCAAGCGAAGATC
ATGCAAGTACATTGGATGCATTTCGTGTATTTGATAACATGGAGAAAGGA
AATATCAGTAGTAAATGCATTCGTGAAATCATGATCAAATCATTAGATCC
AATACCTCAAACGGAGATTGAAGATTTACTGGCTAGTTTAGGGTTGTCAT
CTGATAGGGTTATATCTTACGAAGGTACAAAAATGTTTATAGAGAATATT
TTTAATCATTTCGCACTGAATTAAGACCCCAAACCAGGGAAAACAaggct
aaaataaggaattgtttcatagaatcatcaaaatgggctcttccagaaaa
aaattgaatatgggggagTGGAGgatgtaagattttttttggaatttacc
ACCCGGACATTTTTACCCCCACAGACAGAAGGTCTAACTCCCCGAACAGG
CATCCAGTTTACTTCCCGGGCAACGcaaattttttgattctttACTAAAA
TTGGGACAAACCTCTCAACCCCATGTATGAACATTTTCTGTAAGACCCCA
ATCCCgatattcaaaaaaaatgcaattttgcaattttgagaACCTTTGAG
AAATTTGACcccaaaaagaacaaaaacctTAATACataaattgaattaaa
agaaattaaataaaaatcgtCCTAATCGATTTGACCAAAACTTCTTATAT
AAAAATTATCTGTTTTATTTGaatgaaatatcaaaagaaaacaaGCACCT
AAAAAAAGTAGATGGTCagtaattttgatattttaaattatttttatcag
aaTTTTCGAAGTTCGTAAGTCCACCCGACATTTCAACAGTGACGACGCAA
CATCAAAAGATAACGTCATCAACTACTAGAAACGGtaataataaatattt
tcacGAAGGGCCACCAAAAATTACGATCGAAACGTCCTCAATTTGACCCC
GCATAGCTAAGAATCTAATATACACCAGATGGAATTAACTGTAACTAATC
ATGGAGGAACAAAGATTGTGGGGTTTTCAAAATAACGATATCGGCATCCC
TGTTCTCTGGCATATTGTTGATTTTCTATGCTCAATGATGGTGTCAAATA
AAACCCTTCTCTGGTGTCGTATATAGAAACCTTATTCTGGCATTCATCAG
CAACGTACTGGCAACACAACTCATCACATCCACCCATTGAACTTTACATG
TCTTGGACCAAGCTATCCCCCATCTTTTTTCAGAgtattttgaaattggt
acccaaATTGTAGCACTACTCAATGTGGTTCAATTTGTCCTTGCTGGCAA
CACAACCCATCACTAAATCTACCCATTGAAACAACTGGCCTATAAACATG
TTTTCGACATTCATCTGTGATTATATCCATGTTGCGGGCGGTCGTCAAAT
GAATGTCCTTGGATATTTGAAAGAAGTTGAAAAATCGAACGTTTACATTA
TTGAACAAACTTTCTTGGTAGGAGCTAAACGATAGCTCGTCTATGCATAC
AAAACAATAACTCCattaaaattgaccaaaaaaatcacgatttttgaAGT
CTTGTAAAAAAAGATGCCGTTATTAAAGACAGGAAGAACTAACTAGGTTG
CtgtttattaaaaatttaatgattgaaTGATTTTATAGTCTATCCAGTAA
AGATAATACAATAgatataaatatttttggttaaGATTTTTTGTAATTAT
GCTTACTAACGAACCGTTTtaatattatttcaaaaaagaatatTGATTAG
TGTTGTTAACACCCTGAGGGTGTTGCAAAATGGTTTGCAAAATGACGGGG
GTATCAAcccatttttgaaaatcggaatTTTTAGGTTCTAAAAGTCGAGG
AAAAAACCtgaaattttgttaattttgggGCCCTTACCGGGActtctttc
tcaaaatttaaagtttttggttgttttttgtaACCTTTAGAGGGGCTGAC
ATAAGATATTGTGATTTTTATGACCTTTAGAAGGACTTCGAAAGATAGGT
ATTGAAATGAAAGAAAGGCGACTACTGATCANTATGATTTTTACGACCTT
TAGAGGGACTTCGAAAGATAGGTATTGAAATGAAAGAGAAGTGACTACAG
ATCGTCACCAATATTTCAAAGTTACTACAGAGCAATGACAATCAATAGCC
GATATCACCAGTCAAGTTATGATATGACGAATCACCATTTAAAGTAGTTT
GTTGCATCCTGTTGTTTTGTCGTATCTTGATGACCAGCGCAACAGCCAAC
AAAATACCCACCACTTCCAAGACCACAATCCAAACAGCAAAACCACCAAT
GATGTGTATATTCTCAAAAAGGTATTTCTTGACATCTTCATAACAACCTT
CAGTAAAAATGGTCTCTAATTTCTTATCAAcatttttgttacaatttttc
atGCGTGGAATGACACAGCAAGATGTCGGTACACTGTAATTACCGTCATA
TTGATTCCACCATGTTGTCTCAACCCAATCCCCGTATCCATCGTTACCAC
AACAATGGAATTCACGTTGTAGTGCATCGATCGCTGTTGTGATCCTTTCA
TTACTAGGTATGCCATATTGattcaatgttttttgaaaatccattTTCAG
ACTTTTCTCAATAGGAACTCGAAAAGAATAAACCAGGATTATAAGTCCTA
ACTCGGTTGCCGTAATAACGATCAAAACAACCAGGTATAATATAAGAAGC
ACCAAATTATTACGCCTCGATCCAAAACAAGCCATAAAAGAAAGTAACAA
AGTCACGGAACCGACAACTAACAAAATGATGGGTCCATTTAAATAGCCTT
GAAGTCCagagatttttgtaaaatcattaCTAGCCTCGTTTCGTGTGGTA
TGTAGAACAGCGGCTAAGAACAAGACTAGAAAGCCGACCATCCAGAATAA
GAGATTGTAAACGAAGAATGTAGTTCTGATGCATCTGAAGCCACATTCAC
CAACGTTCATCACCATATTCTGTAGGTAGGTTTGTTTCTCTTGTGAATGA
TTCTGATGTCTATCATCTCGGTCATCGTTGTAATCAAAATCATTCGTAAA
TCGTGAGAATTCTTGGAATCCCATATTTTTCGTTCATTATTTTTAATACT
TGAAAATACGTAGATAAACA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003180	XLOC_003180	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000054	supercontig	sc0000054:652268..659337 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0379847	0	0	0	0.250612	0.442238	7.84258	7.95104	11.2369	8.2882	9.75223	10.6697	0.339273	0.117347	0.289049	0.18785	1.58909	2.92706	0.263344	0.536637	4.61263	3.45088	1.36894	1.61864	0.965859	0.920448	0.0505717	0	0	0.0429545

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR000301	Tetraspanin
IPR008952	Tetraspanin_EC2
IPR018499	Tetraspanin/Peripherin

Vocabulary: **Cellular Component**
Term	Definition
GO:0016021	integral component of membrane

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane

Blast

[Close]

BLAST of TCONS_00005599 vs. Swiss-Prot (Human)
Match: CALM3 (Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1)

HSP 1 Score: 130.568 bits (327), Expect = 3.766e-34
Identity = 61/145 (42.07%), Postives = 96/145 (66.21%), Query Frame = 1

Query:  199 KLNDEQIQEYKEAFLEVDKDNNGKISTRELKNLLRSLGCNPTDLEIQEIINEVDANGNGTIDFPEFINLMKKMTKPSEDHASTLDAFRVFDNMEKGNISSKCIREIMIKSLDPIPQTEIEDLLASLGLSSDRVISYEEFSKFVSP 633
            +L +EQI E+KEAF   DKD +G I+T+EL  ++RSLG NPT+ E+Q++INEVDA+GNGTIDFPEF+ +M +  K ++      +AFRVFD    G IS+  +R +M    + +   E+++++    +  D  ++YEEF + ++ 
Sbjct:    4 QLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTA 148

The following BLAST results are available for this feature:

BLAST of TCONS_00005599 vs. Swiss-Prot (Human)

BLAST of TCONS_00005599 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
CALM3	3.766e-34	42.07	Calmodulin-3 OS=Homo sapiens GN=CALM3 PE=1 SV=1	[more]

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TCONS_00005599 (transcript) - C. hemisphaerica