TCONS_00005607 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005607
Unique NameTCONS_00005607
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1757

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005607 ID=TCONS_00005607|Name=TCONS_00005607|organism=Clytia hemisphaerica|type=transcript|length=1757bp
AGAAGATACGCGGCCACGTTCTAGGAAAGTGATAGTTCCCGTTTTATTTC
GATACAAACAAACACTTGATGAAAAAGCTGACAAGATTAAGTTTACGTTA
TTTGGCTCACCGCACATTTGTTGTTTGAAGTCTGAACTTTCAACGCAACA
CGTAGAGGAGGTGTCGTCAACGTTGCTGCAGAAATATAATATTCAACAAA
AGAGCGATATTTTCATTACCGACTCCTCGGGTACGTCTTGTGGTTTTTGT
GAATATACGTCCGGATGTACGGGATGCCGGATCAACGAGATAACGGACAT
GAAACTCAAACCGGGTTGTTGTTTATCCATCACTTTTTACGAGGAAGATA
GATCCGTACTGAACACATTGAATTATTGTAAAGAGGACGAAACAATGAAA
CTACTTCGTGATTCTGATGTCATTTCCCTGACAGAATGTATGCAAACTTT
CGCTCAAATAGAAACATTAACAGAAGACAACCCTTGGTTTTGTCCGGCAT
GTCAATCCAACCAAGTGTCCGAAAAAGAAATGAGGGTCACTCGGTGGCCT
GGCACACTCATCATTCATTTAAAAAGATTTCACTTTGAAGAATCTCAAGG
TACCAAGATTTCATGCCCGATAGATTTCCCTTTGTCCGATCTACGCGTCG
ACCTGCTATCCTGTCCGGAGGCGTTGAAAGTAAATTGTTGCCCGGTGTAC
GATTTATATGGCGTCGTCAATCACATGGGAGCATTGTTCGGTGGTCATTA
CACAGCGTTCGCCAAACAGAGAGAAGAATGGTATAATTTCAACGACGAAA
CTTTCAAAAAGATGCACCCAACGGAGGATGTGGATTATCAAAAAGAAGGA
TACGTTCTCTTCTACCAAATGAAAGactCGTGATGAATAAGAGTTGAAAT
GTAATGGGGATATTGGAatgaatttaaatgaaaaacgaaaacaTGTTCTA
GTCCACGATCGGGACACACATAAGGCGAGTTGTTGCTCAACAACATACAT
TCGCTGGACATTTGAATATAGCATCATTTTGATGGTTGAAATTCTCTTGG
TAGAGTTTTGATTGAACACTGTTTTGTTAGCTTCCATCTTTTTGTTGCAC
TCTTCTGGGTTTTCTTTGTAAACCAGTTCTGTCTTCTGGAAGTTCAATGT
ACAAACACCAAACCTGGTGGAAAAGACTGACGCAAcccaataaaaatttt
catggaTGCACGGTTTACCTTCTGTATTGCTcatattttgatgacgtcag
cattttttataagaactccaTGAAAGTCCATACGTCAATTGGTTCCAAAG
TTATTAGAgcttgcatttttcaaaaaaaatcaaacctttTACCTATAGAA
TTTGAGTCACTTTTtttaatgctgacgtcatccGTTTTGTGCCAACAAAT
TTTGGAAATGTATAAAAGTTAGGAAAACTTGTGAAATCAAGGCAATAGCT
CTAATTTTAAAATGTAACGACGAAATCTTTATCAATCTATCTGCACGCTT
TTTACACGCTCGCACTGCGGAGATCAGCTCCCTTACGGTTATATCCGTAT
AATGGTAAgtggaaaaaatttaaaagaccgTAGACTTCATGTAATGACAA
TAGGAAAATAAGTATTttgtatttcaattttttatgttcattttatatat
ttttacttttaggtAAATGTTCTTCTAATTATTATTAAGTAGCTGTAAAA
AGAAAAGTTCTAGCTTTATAAGTAAATTCGAGATAAAATACAAACTTCTG
TCATACT
Run BLAST on NCBI

transcript from alignment at sc0000054:32337..37716-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005607 ID=TCONS_00005607|Name=TCONS_00005607|organism=Clytia hemisphaerica|type=transcript|length=5380bp|location=Sequence derived from alignment at sc0000054:32337..37716- (Clytia hemisphaerica)
AGAAGATACGCGGCCACGTTCTAGGTGAGAATTACGCAAATAATTGACCA
ATTAACCCTAATGTTTTATATCCTGAATACTCTTAGTTGTTATTGTAGTT
GTACATTTTCTAAAACATGTTTCCCATTTTGCCAATAGGAAAGTGATAGT
TCCCGTTTTATTTCGATACAAACAAACACTTGATGAAAAAGCTGACAAGA
TTAAGGTAAACTTTTCCGTCAACAGATAAGTCCTTTCGTTAACCCAGATG
GCCTGGTCACAATATTTTTATAGCTGGTTACGATTTCGTATTTTTCCAGC
TAAACATGAAGCTGTTGTATTGGTTAGGGACGCAAGAAACAAGTTTTCGG
CCGATAGAGCAGCCTCATTTAACTTTATACAGAAGCCTAGCACAGTTGGT
TCCTTAACTTTTTCTCCTTCCTCTTTTCGATCTGTTCTTTCTTTAGACAC
AGACCTCAATTTTTGTAGACATCACGATTTTGCTTTTCTCCTCTAGTTTA
CGTTATTTGGCTCACCGCACATTTGTTGTTTGAAGTCTGAACTTTCAACG
CAACACGTAGAGGAGGTGTCGTCAACGTTGCTGCAGAAATATAATATTCA
ACAAAAGAGCGATATTTTCATTACCGACTCCTCGGTAGGTCGTTTATTAC
ACAAAATCGTCACGTATTTAATTTTCTTCATTTTGTCGACTGATTTTGCA
AAAAAATTTGAAAATTAACCTTGATACTAATAAGCTTTTTTACAAACTTT
CAAAAATCCTCTATTAAAAACAGGAGTTGTCAATATGAACTAAATTTTCT
TTAAACATGTAGCACAATGGCTAATCTATCACCCTCTCTCTCTTATTTCA
TCTTTAGGGTACGTCTTGTGGTTTTTGTGAATATACGTCCGGATGTACGG
GATGCCGGATCAACGAGATAACGGACATGAAACTCAAACCGGGTTGTTGT
TTATCCATCACTTTTTACGAGGAAGATAGATCCGTACTGAACACAGTGAG
TGTCCCTCCCTTTGTCATCCAGATTTCAGAGCTACTACAACAGTGAGGTC
TCTATAACTTGAACACTTGATGTAATTCTTTACTTTCACGAGTCAAAAAA
TAGCTACTCAATTTTTTGAAAATTTTGCGTGTATTCGTGTATGAGCCTAA
ACAACGAGCTGTAAACAGCAATTTTCAGCCTACTGTTTCTTGTTCAAAAG
TATAATTTCTAGTATCGATTTTCTCTTCTTTCCTATCGTTTTCTCCTGAC
TATATAATCGATGAGCCTTGCAAACTTTCAAACTTGACATTACTTTTATG
CAAGCTTTCACAGTTTTCAATCTCTTCTTTTATGCAGTTGAATTATTGTA
AAGAGGACGAAACAATGAAACTACTTCGTGATTCTGATGTCATTTCCCTG
ACAGAATGTATGCAAACTTTCGCTCAAATGTAAGTAAAGTCTTCATTGAA
GGTTTGTGTGTCAAGGAATGCTTGGAGGGGGAGTTGGAGGGGTGTTTCTA
AAGTCTATTTTCTACTTTCATATTAAAACAACACAATCTAACGGCTCTTC
TTTCAAAAATACATTTAAAACATAGAAATGATTTCGTATCAGGACTTGTA
TTAAGTAATCTTCCATCGTTAAATGAGAATCCTACCCTAGGATCAAAGCA
CTGAAGCCATCGGTACAAAAATGGAAATTGCAGGCTTTTAATGCAACCAA
CCTGTGTTTTTCAGTTTTCAATGACTAATCTAACAACTACTTATTTTCGT
ATTCTCATAGAGAAACATTAACAGAAGACAACCCTTGGTTTTGTCCGGCA
TGTCAATCCAACCAAGTGTCCGAAAAAGAAATGAGGGTCACTCGGTGGCC
TGGCACACTCATCATTCATTTAAAAAGGTAGAATTTGTTGTTGTGTATAA
TCAATAAAGACCACCTTCCTCGCTTTTTTAACATACTTTCTTTAGGTTTT
AACTTAATATGAAGACACGAGGGTTAAAATCGAGCTTCCCTTTTTTAATG
AAAAGGAAGGAAGGAGAGAAAGTCTATTGTGTGTAAGTTGAAAAACTCGG
TTGCGGTTTTGGTATTGATTATGATCAGAGAGTTACCACTGTATAATAAA
TAGCTTTTGATCTTTTGTAATCGCTTTCTTTCCTAAACTTCAGTCTTGTA
GTAATGATTGTACACGCTTTTTCGGTTGTTTCAGATTTCACTTTGAAGAA
TCTCAAGGTACCAAGATTTCATGCCCGATAGATTTCCCTTTGTCCGATCT
ACGCGTCGACCTGCTATCCTGTCCGGAGGCGTTGAAAGTAAATTGTTGCC
CGGTGTACGATTTATATGGCGTCGTCAATCACATGGGATGTAAGTTCATT
TCAATAGAGAGATCTCATTGCCATTTGATGAGAAAAAGTGGCTGAAGAAA
ACCTTTGAATGGACCTTATCGGAGTTTTTCATTTTTCTAAAAAAGCGATG
CATTGTGGGATTGTTTCGAGCGTATTACAATAGAACTCCCTCGAGGAATT
CCTAAGAGATTTCTATTGTAATACGCTCGAAACAATCCCGCAGTGCATCG
CTTTTTTAGAAAAATCAAAAACTCCGATAAGGTCTATTCAAAGGTTTTCT
TCAGCCACTTTTTCTCATCAAATGGCAATGAGATTTCTCGTCGTTAGATA
TGTTACTATAGGAACTATTCCAGAATTAATTATTATTCAAGATATTTTTA
ATGATAATGCTTTCTTTCTTTCTTCTAATTAATTTGATGCTCCTCACGCC
TAAGTCAAGTTCTTGAGTAATTTTCATCAAATAAAACAAAGGATTTAGAA
AGATAAGTTCAAAGAAATTTAACAGACGTAGAGGAAAAAAAGGAAGAAAG
GACAATATAACAAAGGAAAATATATTTTAAACGATAAACTTTTAACTGCC
TCATTTCTTGTTCCCTGTCGAAGCCAGTCTGAAATAAGACGATTGACACT
GATTTTCTTTAGTCATTTCTTTTCGGTTTGTAATTAAGGTGGGGGTTCTG
ATAAACTGTATTTTATACCCTCACAGCATTGTTCGGTGGTCATTACACAG
CGTTCGCCAAACAGAGAGAAGAATGGTATAATTTCAACGACGAAACTTTC
AAAAAGGTGAGCCATCATCATTCGGTACAAATGTTTGTATTACTGTTGGG
AGTTTCTAAACGTCGACCAGAAATGACGACCGGCGACCACGACCAGCGAC
CAGACAAATTTGAGTTATCAAGTTTTTTTCCCTTTCTCCAACGTAGAGTG
TCTCTCCTAATCATTTGAAAATTATATCATATTGAAGAGTAAGCTCACCC
CTGTCTCATCTATTTAAAGCCACGTGCCAAATACGTAAAACAACCATTTC
GACGTTCTTGAAGCTTGATTATGGTGTCAATTCCGAGGATTTTTCATATG
CGAGCTACGAGTTACAAGTTACGAGTTACGAGTTGCATTTAGAACCACGA
GTTGCGAGTTACTTTTTACGAGTTACGAGTTACGAGTTGCNGAGCTTGAT
TATGGTGTCAATTCCTATCCTTTTATATTATCAGCCTCAAAATAATTAGT
GGCACAAAATATTTTGAAAACGGTTTGAGAAGCTTTGTATTTCATCATCA
GATTGTTATTTCTGTTGAAATTAGTCATTTTGTCAGCATAAAGACAATAG
AATAATTGATTAGATTCATANAACATTCTCTACGGTGGAGAGAGCAGATA
AACTCGATAATCCAAATTTATCTGGTCGCCGGTCGTGGTCGCCATTTCTG
GTCGACGTTTAGAAACTCCCATTACTCCCATCTTAAAGTTCTGAAACAAT
AAATCAAAGTTTCTTTCTTTTAATTTGAACAAGCTCTGATATCATCGAGC
ACTCTCGGCAGATAAGAAGAAAATAGACTTGCGAAACTCCCATTACTGTT
GTTTGTTGGTTTGAAATAAAGTGGTTACTTTGATTTGATGCTGAAGCCAA
TTGTCAAGTATTTGGTTTTATGCTTAAGTCAATTGTCAAGTACAGCTGAC
TCTCTCTAAATCGATCTTTAAGGGACCGTGAGTTTTCTTCGAATACGAGA
TTCGAATTACGGAGATAGATTTATAAGATTTTCCAGCTGAGCAGACCAGC
TCGAATTTTAAAGAGATTCGAATAATAGAGGTTCGAATTAGAGAGAGTTT
ACTATATGTTGAGATTCCGCTAGTGGGGAGATCAAGGGAATATGACAAAT
TGACGGACATTTCTTTCAACAACATTTAGATGCACCCAACGGAGGATGTG
GATTATCAAAAAGAAGGATACGTTCTCTTCTACCAAATGAAAGGTAAGGG
AGCCAATGTTTTAAAAAATTTCATATTGTTTCCTCCTCTGCTTTTCTACC
CCTCTTTAAAAGAAACGAACAATTTTCCTTGTTGGATTAGTTAAATTTTG
GCGACTAAAGTTTTAGAAATTATAGGTAGTAATATGTTTTTGTACATATA
TCTCAAGGATTTTTGCTTCTAGTATTTATTCCAAATTTCTTTTTTCAGAC
TCGTGATGAATAAGAGTTGAAATGTAATGGGGATATTGGAATGAATTTAA
ATGAAAAACGAAAACATGTTCTAGTCCACGATCGGGACACACATAAGGCG
AGTTGTTGCTCAACAACATACATTCGCTGGACATTTGAATATAGCATCAT
TTTGATGGTTGAAATTCTCTTGGTAGAGTTTTGATTGAACACTGTTTTGT
TAGCTTCCATCTTTTTGTTGCACTCTTCTGGGTTTTCTTTGTAAACCAGT
TCTGTCTTCTGGAAGTTCAATGTACAAACACCAAACCTGGTGGAAAAGAC
TGACGCAACCCAATAAAAATTTTCATGGATGCACGGTTTACCTTCTGTAT
TGCTCATATTTTGATGACGTCAGCATTTTTTATAAGAACTCCATGAAAGT
CCATACGTCAATTGGTTCCAAAGTTATTAGAGCTTGCATTTTTCAAAAAA
AATCAAACCTTTTACCTATAGAATTTGAGTCACTTTTTTTAATGCTGACG
TCATCCGTTTTGTGCCAACAAATTTTGGAAATGTATAAAAGTTAGGAAAA
CTTGTGAAATCAAGGCAATAGCTCTAATTTTAAAATGTAACGACGAAATC
TTTATCAATCTATCTGCACGCTTTTTACACGCTCGCACTGCGGAGATCAG
CTCCCTTACGGTTATATCCGTATAATGGTAAGTGGAAAAAATTTAAAAGA
CCGTAGACTTCATGTAATGACAATAGGAAAATAAGTATTTTGTATTTCAA
TTTTTTATGTTCATTTTATATATTTTTACTTTTAGGTAAATGTTCTTCTA
ATTATTATTAAGTAGCTGTAAAAAGAAAAGTTCTAGCTTTATAAGTAAAT
TCGAGATAAAATACAAACTTCTGTCATACT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003184XLOC_003184Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005607-exon-sc0000054-1575043694:37693..37716TCONS_00005607-exon-sc0000054-1575043694:37693..37716Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:37512..37578TCONS_00005607-exon-sc0000054-1575043694:37512..37578Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:37083..37220TCONS_00005607-exon-sc0000054-1575043694:37083..37220Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:36722..36859TCONS_00005607-exon-sc0000054-1575043694:36722..36859Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:36288..36379TCONS_00005607-exon-sc0000054-1575043694:36288..36379Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:35840..35956TCONS_00005607-exon-sc0000054-1575043694:35840..35956Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:35380..35532TCONS_00005607-exon-sc0000054-1575043694:35380..35532Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:34611..34692TCONS_00005607-exon-sc0000054-1575043694:34611..34692Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:33424..33487TCONS_00005607-exon-sc0000054-1575043694:33424..33487Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1575043694:32337..33218TCONS_00005607-exon-sc0000054-1575043694:32337..33218Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:37693..37716TCONS_00005607-exon-sc0000054-1510915933:37693..37716Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:37512..37578TCONS_00005607-exon-sc0000054-1510915933:37512..37578Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:37083..37220TCONS_00005607-exon-sc0000054-1510915933:37083..37220Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:36722..36859TCONS_00005607-exon-sc0000054-1510915933:36722..36859Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:36288..36379TCONS_00005607-exon-sc0000054-1510915933:36288..36379Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:35840..35956TCONS_00005607-exon-sc0000054-1510915933:35840..35956Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:35380..35532TCONS_00005607-exon-sc0000054-1510915933:35380..35532Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:34611..34692TCONS_00005607-exon-sc0000054-1510915933:34611..34692Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:33424..33487TCONS_00005607-exon-sc0000054-1510915933:33424..33487Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1510915933:32337..33218TCONS_00005607-exon-sc0000054-1510915933:32337..33218Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:37693..37716TCONS_00005607-exon-sc0000054-1491911889:37693..37716Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:37512..37578TCONS_00005607-exon-sc0000054-1491911889:37512..37578Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:37083..37220TCONS_00005607-exon-sc0000054-1491911889:37083..37220Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:36722..36859TCONS_00005607-exon-sc0000054-1491911889:36722..36859Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:36288..36379TCONS_00005607-exon-sc0000054-1491911889:36288..36379Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:35840..35956TCONS_00005607-exon-sc0000054-1491911889:35840..35956Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:35380..35532TCONS_00005607-exon-sc0000054-1491911889:35380..35532Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:34611..34692TCONS_00005607-exon-sc0000054-1491911889:34611..34692Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:33424..33487TCONS_00005607-exon-sc0000054-1491911889:33424..33487Clytia hemisphaericaexon
TCONS_00005607-exon-sc0000054-1491911889:32337..33218TCONS_00005607-exon-sc0000054-1491911889:32337..33218Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:32337..37716 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.05376	0.000644935	0	0.085878	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6.12915e-09	0.00889586	6.60575e-10	6.60013e-07	0	0	0.000109341	0	0	0
Blast
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BLAST of TCONS_00005607 vs. Swiss-Prot (Human)
Match: UBP4 (Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sapiens GN=USP4 PE=1 SV=3)

HSP 1 Score: 110.153 bits (274), Expect = 5.302e-25
Identity = 57/156 (36.54%), Postives = 87/156 (55.77%), Query Frame = 2 
Query:  419 VISLTECMQTFAQIETLTEDNPWFCPACQSNQVSEKEMRVTRWPGTLIIHLKRFHFEESQGTKISCPIDFPLSDLRVDLLSCPEALKVNCCP-VYDLYGVVNHMGALFGGHYTAFAKQR--EEWYNFNDETFKKMHPTEDVDYQKEGYVLFYQMKD 877
             ++L +C++ F  +ETL E +PW+CP C+ +Q + K+  +   P  L++HLKRF +      K+   ++FP+  L +    C     ++  P VYDL  V NH GA+  GHYTA+AK +   +WY F+D        +ED    K  YVLFYQ +D
Sbjct:  775 TVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMSEFVC----NLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLA--SEDQIVTKAAYVLFYQRRD 924
The following BLAST results are available for this feature:
BLAST of TCONS_00005607 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
UBP45.302e-2536.54Ubiquitin carboxyl-terminal hydrolase 4 OS=Homo sa... [more]
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