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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005618 ID=TCONS_00005618|Name=TCONS_00005618|organism=Clytia hemisphaerica|type=transcript|length=3886bpRun BLAST on NCBI protein sequence of TCONS_00005618-protein >TCONS_00005618-protein ID=TCONS_00005618-protein|Name=TCONS_00005618-protein|organism=Clytia hemisphaerica|type=polypeptide|length=756bp MIFKALYSSKMLQILTILFICVNLYSCGEDKDVSTLANDENDGICKDNHCRun BLAST on NCBI transcript from alignment at sc0000054:79996..97283- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005618 ID=TCONS_00005618|Name=TCONS_00005618|organism=Clytia hemisphaerica|type=transcript|length=17288bp|location=Sequence derived from alignment at sc0000054:79996..97283- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000054:79996..97283- >TCONS_00005618 ID=TCONS_00005618|Name=TCONS_00005618|organism=Clytia hemisphaerica|type=CDS|length=2271bp|location=Sequence derived from alignment at sc0000054:79996..97283- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005618 vs. Swiss-Prot (Human)
Match: MMEL1 (Membrane metallo-endopeptidase-like 1 OS=Homo sapiens GN=MMEL1 PE=2 SV=2) HSP 1 Score: 397.127 bits (1019), Expect = 1.103e-120 Identity = 229/728 (31.46%), Postives = 384/728 (52.75%), Query Frame = 3
Query: 978 ICKDNHCVRVADYMKKGLNDAYDPCENFYEYACGGWKKSHKIPEKKEEYSAINELSDNNDKLLRQFLEGTYKGELCDKKHPTDSPTIMKVKDFYTSCMNEELIEKRGSKPIRDFIDKLGGWXXXXXXXXXXXXXXXXLQR----VHAEYPAEIFFTIDVDVDPXXXXXXXXTIDQAKLSMPQIAYFTNKEALVKLVEYSTE--IAMKTLXXXXXXXXXXXXXXHQKMKAVFEFETAISKIFIPKSAKR-----FTRVTLEKLNEATKVTQFNWTEHITTIFKDYDIEISKDTHVVVLSSDSYIEEMINLIKATPKNVLSNYIMWKMVKDMVAFLDKNFTDRNNVFRKELTGVPHKKSRKEMCFKYTDEILGPLVGALFIRYAFCLADKQEVEEMMELIIDEFIQNVDDVNWISEHTXXXXXXXXXXXXXXXGYPNYLFDET--VFSQRYKEIEIHDNKFFENVVSIDRFSNHRTFKKITLDVDPHQWVSVPHMANAFYVVTKNEIVIPAGILQPPFFYAKPLPRSISYGAIGHVLGHELTHGFDTLGRKFNKNGELIAKRSLQPLMRATVLAKNKDDQWSKESIARFSSRTNSLKEQFNKYR--ITDEHSDKNSLQIDGENTLGENIADAGGVKMAYKAYRNWVKDNGEEYVLPKLNKTSDELFFIGYAQKECHLSTMKALTDAIKDDVHAPSMFRITGTMSNSVEFAKAFKCSATSTMNPQNKTSIW 3116
+C CV A + + ++ +PC++FY++ACGGW + H IPE YS + L D + +L+ LE + D P + K + Y SCMN+ +IEKRGS+P+ D ++ +GGW V D +T + L+R +++++ + + + D +N ++II IDQ L MP Y+ N + K+ E + +++ TL + + V + M V E ET ++K +P+ + + R+ LE+L + FNWT I T+ I++ D VVV Y++ + N+I + NY++W++V D + L + F D +RK L G ++ R C Y + + VG+L++R AF K V E+++ + F++ +D++ W+ E +K +KA ++ ++G+P+Y+ +E + Y + ++ +FEN + + R+ +K+ VDP+ W+ + NAFY +N+IV PAGILQPPFF +K P+++++G IG V+GHE+THGFD GR F+KNG ++ D WS S F ++ + Q+ Y + DE + ++G NTLGENIAD GGV+ AYKAY W+ + G++ LP L+ T ++LFFI YAQ C + +IK DVH+P +R+ G++ N FA F C+ + M+P+ + +W
Sbjct: 88 VCTTPGCVIAAARILQNMDPTTEPCDDFYQFACGGWLRRHVIPETNSRYSIFDVLRDELEVILKAVLENS---------TAKDRPAVEKARTLYRSCMNQSVIEKRGSQPLLDILEVVGGWPVAMDRWNETVGLEWELERQLALMNSQFNRRVLIDLFIWNDDQNSSRHIIYIDQPTLGMPSREYYFNGGSNRKVREAYLQFMVSVATLLREDANLPRDSCLVQEDMVQVLELETQLAKATVPQEERHDVIALYHRMGLEELQSQFGLKGFNWTLFIQTVLSSVKIKLLPDEEVVVYGI-PYLQNLENIIDTYSARTIQNYLVWRLVLDRIGSLSQRFKDTRVNYRKALFGTMVEEVRWRECVGYVNSNMENAVGSLYVREAFPGDSKSMVRELIDKVRTVFVETLDELGWMDEESKKKAQEKAMSIREQIGHPDYILEEMNRRLDEEYSNLNFSEDLYFENSLQNLKVGAQRSLRKLREKVDPNLWIIGAAVVNAFYSPNRNQIVFPAGILQPPFF-SKEQPQALNFGGIGMVIGHEITHGFDDNGRNFDKNGNMM-------------------DWWSNFSTQHFREQSECMIYQYGNYSWDLADEQN------VNGFNTLGENIADNGGVRQAYKAYLKWMAEGGKDQQLPGLDLTHEQLFFINYAQVWCGSYRPEFAIQSIKTDVHSPLKYRVLGSLQNLAAFADTFHCARGTPMHPKERCRVW 779 The following BLAST results are available for this feature:
BLAST of TCONS_00005618 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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