TCONS_00005622 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005622
Unique NameTCONS_00005622
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2807

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005622 ID=TCONS_00005622|Name=TCONS_00005622|organism=Clytia hemisphaerica|type=transcript|length=2807bp
cattttttcaaaaattgagttatgaccataccgatgctttacaccccatt
ttttatcgaatttttggcttaaatccatcaaaaaccaacctaaagtgNTC
GTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATGAC
CAGAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTGTATAAT
TTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAATCAAATT
TCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGAGAACTA
TTTTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTATGGACC
GCCACTTCCCAAGAATAAACTGTTCAAAAATGTAcgtttggctttaaatt
tcacAGCCTCTCCCGCTGTTCACGTTCTTTGTTCCTAAAATTTGTTGTAA
GATTATTTGACAAGTTCACCTCCCTCttgtaaaaatcttttcaaaggtTC
CTTTAATATTGTATTGATGTAGGTAATATTTTGAGCAAAGTCTCTTCCTT
TTCTTGGAGGCTCATCAAGAAGGAAATACTGCTTCCAGCGTTAGCCTTAG
ATCCTGAGGATCATTTTTTTTAGGATTCATCTTTCCAACGATGGCTGTAT
GCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGTTCACCCAAGTTCGC
TTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATG
ATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAattttcgaagaatcct
tttCAACGGCTTCTTCCCCTTAGGTCGATGAGTTTTGCAGCCGACCATAT
TGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACGCTCTT
TAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTGGTAAA
GAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCTTTTGGCTATGAAAAG
CAGAGTGTTTAACGAGATGTTTTTCCCTGGTTCGTATCAATCTTCCGCGC
CTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCACTACCTTTCG
CAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGAAACGCAACAA
CAACACGACAGCTAACAACGGTTCTACAACATCAACAACGACAGCCTCCT
CATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTCTCCTGAATCG
AGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGCTTCAAGTCAC
AGAATTTGACATGGAGGAGTTCTCAGCGTTGATCGAATACATCCAAACAG
GTTCGTGTGTGATCACACCAGAAACTGTGGTGGGTTTGGCGTGTGCTGCT
GAGTATTACCAAGTGGACGAGCTGATCGACCTTTGTGAACGCTCTTGTCA
ACAAATGTGTGATATAAGAAACCTACCAGTTCTATTGACGTCAATCAGAC
AACATATTTTGCGTTACTCCATCGCTATCAAGCTTGAACAATATGTGAAG
TCGTTCACGGAATCTTGCGATAACgagttatttgattttttcgacaTTTC
GTCTCTGTCCCATGAAGTGTTCGACTGTTTGCTGACATCGACATCTGGGG
TTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACGAAAGACTT
TCTACATTTCTGAACGCCAATGAAAGCGTGCGTTTGAAAGACTTACTACT
GCAACACGCAGACATTGATAATTACATTGAAGACAAGTGAGATTCATCAT
AACAATATTGTGACGGTTCCAAAACCTGGTCCATGAATCTATGACCATGC
GGTGactattatttattattttgacCATCCGAATTTCGTGAAAAACGGGA
ACGGTATTAAACCCATGCTATTACTCCTATTTTACCTCCTTTTTCATTTA
GAGAACAAGCTTTCGATACCTGATTGATTGAAGATTAAATCAAAAGTTTC
CAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCTGCTTTTAAAAGGGT
CCCgcgtttttaatatttttatccgTCCTTGCTTTGCTTTTATTTAAAAC
ATGTTGTCGTTTTGctatatgaaaatatatttttatgatCAGACGTCCTT
TTAATGTTAGTATCTCTTTACGGCGCTCACATGTTATATTAAAATTCGTG
ATAATGtgtaaatttcataaaatatataCATGAAGCAAAATAAAGGCCAA
TTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAAAACTACGCATACTT
ATATCGGGAATTATCTTTACTCCAGGTAGTATTCTTCTTCAATAGTCGGA
AATGCTCTTCTATGATTCGAAAAAAAGTCATTATTGACAGTAACGTTGGC
TAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGGGGTTCATAATTCAT
GCCAATACTATAGCAATCAAATGCATCTAAAACGAGGCATCTGGAGAAGA
AGAACAAAATGTAAAGTCAAATAATAGTAAATTAGCTGCTCTCTGTATTT
CTTTATATTGTTGTCTATTCACCCTTGGCTTTTTACCCTTAGTATTTATT
ATGGCAGTCAGGAGTAATACCTTAAACATGGCGTATACCTTGTTCAAGTA
AGAATtcaaaatttctattgtttgatACTTCCTATTTAGGAAGTAGTGGG
AATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCGTCTATACCATTGGA
AAGAGCACGAGAAACTGAATTCCCAtggtgatttttagaaaattccacAG
CCGGAAT
Run BLAST on NCBI

transcript from alignment at sc0000054:226329..240197-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005622 ID=TCONS_00005622|Name=TCONS_00005622|organism=Clytia hemisphaerica|type=transcript|length=13869bp|location=Sequence derived from alignment at sc0000054:226329..240197- (Clytia hemisphaerica)
CATTTTTTCAAAAATTGAGTTATGACCATACCGATGCTTTACACCCCATT
TTTTATCGAATTTTTGGCTTAAATCCATCAAAAACCAACCTAAAGTGNTC
GTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATGAC
CAGAAGGTAATATATTAAGATTGAATTCGATTAAAAACCCAGCTTCTGTG
GATTGAGTCGTCAATAAGACAGTTTTTTGGTTCTATGTCTTCACTTCAGA
ATTGCCTACAAAATTTCTTAAATTTTTGAACTAAAGAGATTTTAATGAAC
TTTAGAGATTTTAATGAACTTTTTAATGAATGAATTTCTGAATGTTGTTA
ACAAAGGTGTATGGGTAGAGATTTCAATTAATTTTCTTTTAGACATTCAT
AGCTCTTTGCTAATCAAAAGTACTAATCAATAAGACAGTATTACCAAAGT
ATGAAATTCCAACCAAAGCCTTGTTATGTTGTGTTTAGTCACGTCGAAAA
AAAGTTTGGCAGACATGTGAAGTATATTTCATTTCCTTCCAAAGGAAAAT
GATTGATATTATTTGAACAGGATACCTAGCGAAGGAAATTGTTTAGAAAT
TTTAATATGATATTGCCATTTCATTTACTATACATTACGAGCAATAAAAG
GTAGTCTGACTTTCTCTTTGACTAATTTTGCAGTCTCAAAGTTTTTAAAA
ATAGTTAAGATTTACTCGTTGTCATGGTTCCATACTTGAGACAACCAGTT
CTTTTTCTGTCTTACTTCCTGTGTTTTGAGGCATTTCTCCTTATTGTATA
TTGGTGTTTTGAATTTCCACAACAGCAGAATTCTTAAAATCCTTGATGTT
GGTGACATCACTAATACCCATTCACCAGACTTCCTTTTTAAAAACTAGCC
ATTTCATCTCGAGTAGGAAGAATTCTCAAGGGTTTTTCTTTGTTTTCGAC
AGTCATTTTCTTTTTGACACGTAAAATAGCTGCTATGTCAACTCCAGTTA
TATAGCTTAAAAGTTTTTAGTACTTTTGAGAGCACGCTGAAGAAAAATAT
CAATATCAAATATCCCTTGTCAATTTAACAACAGCTTCAGTTTCTGAGTT
TGTTGAGTATCTTATGGTTAAGAAGAAGGAAGTAGACGAAAGAGGAATCA
GATATGTGAGGTTTCCATGATTCATTTATATCACTGAGAAAAATTTGTCT
GCTCTTGTACGTGGTTTATAGTTCAACCATACAATGATTAAGTTTGTTGA
TTGCTTTGTGTGCTCAGATAATTAACATACATGTACTGTGCCACATGCCA
AGACATGCTGTTTGATGATTGCAAAAAATGCCATCAAGAGAAGAAAAAAA
TCATCATTTTTCATCATAATTGCAGTGATTGAGTGCTCATGACTTTTTTA
AGAGTTAATTGATTGGTTAGCTTGTTTCGAAAAAGAATAACCTGTTTATC
TATACATTTTAATCATTGTCTTTTGACAAATTGCCTTTTGTGCGTTGATC
TATTTATTTTTGTAAAAGTAATTATGCAAACACTGCAATAATGTTTCTAA
AATCATTTATCTGTGGTGATTAGCTCTTTTAAACGACCACATTAGTGAGT
TTTGAACCTAGGAAATATCAAGTGGCGTGCAGTGATTTTCCTGTATACAA
ACTCCTAACCATTTCAATCTGTCAAAGATCACTTTCTATGATTCTCTTCA
GTAATTCGAACATTCAAATTATATTTCTAGTTCGACTTTAACAAAAAACA
TAGTATTCTAAAGACCAATGAAAATAATCCTTTCAATAGTCTAATTGAGA
TCCATTTATTGATTTTACAGTTTCTTATCTACATACTAGCCCTGTTTCTA
AATTGTTGAAAGTTCGTATTTTCCAAGAAAACCTTAACAAAAGCCATTTC
GTTTTTTCTGTTCACCAGCTCCAAAGGAAAAGACATATTGGGAATGATAT
TGTTTGTATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGA
TCAAATCAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTA
CATGGAGAACTATTTTACAAGGTATCAATGTTATTTTCTTTTCACTCTTT
ATTAAAGACATTAGATGGTAAGGTGGACCGATTGCTTGTCGTTTATTCAC
CTCATCACTCTGTAGTAGAAGGAGCTATTCGAAATGTACTTTTACTTATA
TATAAATTCGAATGTACACTGTACAATTGAATTCTTGAAACATGAAACAA
TTCACTGATATTTCTTTCACTCTCAGGTCGATGTTGCTTCGAGAGATTTT
GTCCAAAATTATGGACCGCCACTTCCCAAGAATAAACTGTTCAAAAATGT
ACGTTTGGCTTTAAATTTCACAGCCTCTCCCGCTGTTCACGTTCTTTGTT
CCTAAAATTTGTTGTAAGATTATTTGACAAGTTCACCTCCCTCTTGTAAA
AATCTTTTCAAAGGTTCCTTTAATATTGTATTGATGTAGGTAATATTTTG
AGCAAAGTCTCTTCCTTTTCTTGGAGGCTCATCAAGAAGGAAATACTGCT
TCCAGCGTTAGCCTTAGATCCTGAGGATCATTTTTTTTAGGATTCATCTT
TCCAACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTAC
CGTTCACCCAAGTTCGCTTCCATGCAGGTAAAGAAGTCTTTATTTCTGCT
TCACCCTGTCTTGGTGATATGGAAGGTGTTAGAACTGATCAATGAGTCCA
ATTAATGTTCATTGAGTTGGACACTTGTAGGTAAACGTTTGACTGGTTCA
ATAGTTGTATCAAGACGAAAAAAACGGGTTGAAAAGAATCAAATGGGATT
GTATTCGCTGGTTATGACAATCGCATATTATATTATTCTTGTTTTTGTTC
AGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATGATCAAGCT
TGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAGAATCCTTTTCAACG
GCTTCTTCCCCTTAGGTAAGCTTACGTATTTCGTCATGTCAATATATTAT
AATCAGTTAAAATAAGTGGAAACGAGTGGAATTTATAGTATTAACCTGCA
TGTTAGAACCAAATAGATTCATTACAACAAAGAACTCCTTTTAGGAATAA
GTTCACCAAGCTTCTTTCAATAGAAGAGAATGTAAAAATCTTGTTTTACT
TACTGTTTTGTAAACTTAACAGAAATTTGTGTGTTTTAACCATCATCAAA
GATGGTTTTTAAAAGTATTTGATAATTGATTTTGAATTTTTCTACATTAC
ACAGACACAGTTTCACTCGATCGTCGCCACATACTCCGTCCTTGCAAAGG
TATCAGGACAAAACATGCCATTCATGCATTCATTTCATTCACTCATTCGC
TCGCTCTAACTAACCCACACTCTAATCTATATAGCTCAAATCAACGCTAT
TATACATAGTATCTGAAATAGGGAGGTTTTATTTTCAGATGAATTTTCGG
ATGTTTTCTGAGGTTTATTTCTGTGGAAACTTAATTGTTTTAGTTTTTTT
GGTTTATCTATCGTGTGTTCATCACATCATATTGTTTTACTCATACTGTA
GCTTTCTCTTCTCAATAACTAGGTCGATGAGTTTTGCAGCCGACCATATT
GGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACGCTCTTT
AGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTGGTAAGT
TTCCACAAAATCTCCTGATCCCTGCGATTGATGATAAGTAAGTCTGCGAC
CGCAGTCGAAAGCTATCTACACGTTTTTTTTTTTATAAGGAACACGTTTA
TAAGGAACTCGAGGCTGAAAGTAGTCTAAAAAATAAGGAATTGTTAAGGA
ACTGCTCAGGCTAAGAATAAGAAAACAAGCTCTAAGGAACAGTAAAAGTA
AGAGTTTTCACTTGAACTAGCTATGTAAATAAGGAACTCAAAAGGAACTT
TGAGGCTGAAATTTTCTGTAAAAATAAGGGAACTCCAGGCTCAGAGCAAA
GTTAAGGTTCCTTATATAAAAAAAAACGTGTAACCGAAGGTAGGGGAGGG
TGTCACTCTTTTTCCCTGGATTGCTCCACTTACCCTAGCCTGGTTAACCA
AGCCAGTTTTTACAAGGCCAAGATACGGCTGAAGGCAATATAGCGTTATC
GGTGCTTTAATGATTTTTATGATGTACGGAATTTTAAGTTTGCCTTGAAA
AACTGGCTTGGGCGAAGCGCGCGTTCATATTTTGAACGCAGAAGTCGGTG
AGACTCGGCGAGCATTTGGCCTCTTCTAATTGGCCATTATAGACCATGTG
ATAAGAAACGAAATTTTTCGTTTGTTTTGAAAACGCTTTTCACTTCTCAA
CGAAAGACTTTTTGAACATATTTTATTCTGTACTTTTTGCGTAAAAAGAA
AGATATGTTTTTCTCTCTCTCTCTCTTTGAAAAACCTTTATTTAACTGTA
TGAAAGAGAAGTTGAGTAAATAGGGAGGAGGGTGTATTTATTTAACAAAT
TCCTTATTTTTATATTTTTGCTTTTTTATGCGAATGAGTTATGGGAAACC
TTTTGTTAAAAAATATGTGTTGAACTAATTATACAAATTTATGTGCATTT
ACAAATACGTGCCCGGGAAAATTTGAAATTTCGTTTTTGTCAGTTGATAA
TAAACCGAGTTTACTTGTACTAAGCCAGATATTCAGTCACAACTTACCAT
CAGATTTTACTAAGTGACTGAATCAATCTGGATTAGATTTCTAGGCTACA
CTTACCCTTGATCCTTCTCTTAATTGCTGAGCATCAAGCAGAGAGACATC
AAGTACCATTTTTGGAATCTTTAGTATGACCTGGGGTTTGAACCCACAAC
CTCGCGCATCGTAGTCGGATGCTCTACCACTGCACTGGTCCCTGCGATTA
GTTAGATATGAAAAGTGAGTTTTTCCACCAATCTTCGTTGCTCAATCAGA
TTTACATTTCCTAGTTTAAAGGTCCCAAAAAAGGGCCACATCAGCTGTGC
CTTTCGTAATATCAAGGGACTCAAAATGAAATTTATCAAGCTCCTCCCGA
ATTTGAAATCTGTTTTCCTGAGGGAGAGGCCGCCTCTCTAGCTTTATATT
CTTTTTCCAGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCT
TTTGGCTATGAAAAGCAGGTAAGATAGACATTGTCGCCACTGTTCATCGT
ATTTCGATTTTATGATTGATACAGCCATTGCGTATTTTCAATGGTAAGGA
AAATTACTCTTAGGTTCCAAATAAATGGGGGAGGGGCTGGAATAAACGGG
GGTGGGGAAAATTTTCGAGATTTTAATAACCGGGGGGGGNAAAAAGACAA
GGCGTGCACGGGGTGAAGTTCCCAAAGAGAAGGCGTGGTAAAGGTTAAGG
TGTGTGTCCAGGGCTCTTTTGAACTTATCGATAGAAATGTTTTTGAGGTT
TCTGATGCTCTTTGGCATAACATTAAAAAGTTTTGCACCTTGCACTGCAA
GTGTGCTGTCTCTAAATTTTGATGTTTGATTCTTTTTCAGTGGTTTTGAT
ACCATTTACAGTAGGTACAATCTTTTCCATCACCTTCCAGACATACATTA
TTCTGTAGCGTTCTCTTCGCCTTTGAAGTGACACTCCCAATTGTTTGGGG
TGCCATTTATCTTTCGTAAGAAGGACTTTTGAATATCTTCAAGTCTCTGA
ATGAGACCAACTGCATTTGGGCTCCACAGAATGGAGCAATATTCTAATAT
TGGTATCACCAATGATTTATATACCATACAATTTAAAGATCGTGAAGAAA
AAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGATTACTGAA
GTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTCCAAGGTT
TTTCACAACATCTTTGTTTTCAATCTCAACACCAGATGGTGATGTATAGC
TTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAACGCAAGAGTTCAAAT
TTTATATCATTTAGCTTCATATTGTTGTCATCCGTCCATTTATATATTCT
ATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAGAGNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAGTGACACCATTCACTAGCA
CTGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAATAATTTT
CCATCTATTCCTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGATGGACTTT
AGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTTATTTTTCGTAG
TACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAAATCTAGGTACA
CAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATCAGGTCATAT
TGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTGAATCCATGTTG
ATTGGGATTGAACAGATTATTTTCATCCGTGTGCTTTACAATATGTGCTC
TGAGTACTTTTTCAAATATCTTGATGACATGGGATGTTAGGGCTACTGGT
CTATAATTTGATGCCAGTGATCTGCTACCTCCTTTGTAGATTGGTGTGAT
TGTGCATCTTTTAAGTTCGTCTGGGACAATCCCTTTGTCCAAACTTTGTC
TCCAGAGGATACAAAGAGGAATAGAAAGTTCTTCTTTGCATTGTTTGAGA
AAGATTGCAGGGAAACCATCGGGACCTGGTGCTGCAGTTTGGGACAGATC
GTTGATTGCTTTTATTAAATCATCTTCTGTACTACTACCGACTGTGCCCG
GACTTAGAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCTGC
TTAACCTTTTTCAACTTTCAGAGTGTTTAACGAGATGTTTTTCCCTGGTT
CGTATCAATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTT
TCTCCTCACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGA
CTTTTGGAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAACAT
CAACAACGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAAT
AACCCTTCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTC
CTCTAAGGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGTTT
TGCCCATTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACCTT
TTAGAGTCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATTCT
CATATGTGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTTTT
AACTTTCCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTCTC
AGCGTTGATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGAAA
CTGTGGTGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGCTG
ATCGACCTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAACGT
AAGTCGCCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAACAA
TATTTTAGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTGGC
GCACGAAACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAAGT
GACAATAGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTTGT
TTGCCTTTTTCTCAGTCTTTCTTATTATTAAATTCGCTTAGCGAAAGTAT
TACGATAGCCTTCCGTGTATGTATGTATGTGGCGAGACATTTTTTGGGGC
GCAAATTATGGCGTGGGCGTTTGGCTGCGGGCGTACTACGAGCAATATTC
TAAAGATGGACTCACTCACAAAGATAAAAAATGATAAAAACAGGGATTTT
CTTAATAAATAAAATACGCCAGGCTAGTGCAAGAAGTGTAACCAAGTTTT
TGTAAACATTCATCGTGAGAACTTTTTAAATGGCTGCTTGATTATATTCA
GATATTGCACAAGCTTTTGTGCTTTTGAAAGTTGCAGCTGCTGTATAAAT
TTTAATCATGTTTTCTGGTCCTTTGTAGAGTGTTTAAAGAGGTTTAATAT
TTGTTTACTACTAAGTATTTTATGTTTGTGTAGTGTTAGTGAATGCACCA
ACAAATTGATCATGCTTAATAGTATATATAAGGAGTTAATATTCCACAAC
AAACAACAACATTATTAACCCTCTCTTCTCTTCTTCTCCAAAACTACAAA
CAGCAAAGGTATGATTTTTTTTTCTATTTTTCACCAGATAGTTATGTGTT
AATAGTGAAACCAGTTGTGACAAATAGTCAGTTTTAGCAAGTACCGTGAG
ATTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATGAA
AGACCTGGCTGGTCATTAAAATACAACTACGCAGCTCCGCTCANCTTTCA
TTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAATCTAA
CGGTACCGTGAAGTCGGGTAACTTGCATGGATGGAGGCTAACTTTTATTG
CGTAGGCATCAAATGACTGACCAATCAAAGCAACAAAATTTCAAAACAAA
TGAACTCCACTTGCAGCTTTAGCCTACCATTTTTGTTTTGATTTAACTTT
GTATTTTAATGACCAAACGGGTCATTCATTTGGCAAGCTACCCGATCTCA
CGGTATTTCTTAGAAATCGTGTCAATTGTGAATTGAAACTCAGCAATCAT
TTTTGTATAATCGAAACGACCCTGCCTAGACACTGCCGTACAGTGTCATT
GTACCATGATTTACGGTGGGTAAGGTGGGGTGTACAGTACAGCAGATTTA
AAATTAACCTATTTTCGCCGCCGTAAAAAGGACATTTAGATCCAGCCCCA
CCGTACACCACCGCACAATGTACAGCGGTCCCTCGTTAATGATGACAGTT
TTTTATCTGATGAAGTTTGATTGGTGTTCGANNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGG
ATGGACTTTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTTAT
TTTTCGTAGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAAAT
CTAGGTACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATC
AGGTCATATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTGAA
TCCATTATTCCTTATTAGGTCTGGAAAATTTTTCGAAAAATCAACAAGCA
GGGGGAGTACTAAGAGTACGGATTGTTCCCCGACTGTGCCCGGACTTAGA
GATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCTGCTTAACCTT
TTTCAACTTTCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATCAA
TCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCA
CTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGA
AACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAACG
ACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTC
TCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGG
TAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGTTTTGCCCATT
TCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACCTTTTAGAGTC
ATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATTCTCATATGTG
ATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTTTTAACTTTCC
TTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTCTCAGCGTTGA
TCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGAAACTGTGGTG
GGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGCTGATCGACCT
TTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAACGTAAGTCGCC
TTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAACAATATTTTAG
AGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTGGCGCACGAAA
CTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAAGTGACAATAG
AACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTTGTTTGCCTTT
TTCTCAGTCTTTCTTATTATTCGTTTTTAACTAATTTAGTCTAATAAAAT
TTATATTTATTTTAATGTATATCTCTTGGTTCAAATATATTAGGGAAATT
GCAGTGTAAAAAAATAGGACATGGCTATTGTTTTGACATACAACTAACTG
TTCTCGACACTGAATTGAAGTTTCATGCTTCATGTTTTTCATTGTTCTTC
TAGCTACCAGTTCTATTGACGTCAATCAGACAACATATTTTGCGTTACTC
CATCGCTATCAAGCTTGAACAATATGTAAGTGTCTGTCATACAGTAGTTG
CTCCCTTTCTCACAAATGCCCTTATTATTCGTCCAAATTTAAGGAACAAA
TGAATTTTAAAAGATTCGAATCTGAAATCGGCCAGCTATGCTTTCGTGTT
TGTCACGGTTATTTTAGACATCCAGTCTGAATCAAACGCTAATTAAGAAT
CAATTTATCTTTCACTTACAGGTGAAGTCGTTCACGGAATCTTGCGATAA
CGAGTTATTTGATTTTTTCGACATTTCGTCTCTGTCCCATGAAGTGTTCG
ACTGTTTGCTGACATCGACATCTGGGGTAAGTTAGTTTTCACCCTCTTAA
TTCCACGTCATGTGATTATTTTGAAGGGCTTGTAATAAAAGTTTCTTTTG
CCGTTAGAGCTCATGTTGCGGATTAAAACCCTGTCATTTCAATTTCTACT
TTATTTTCATTATTGATGTTTGGCGATAGGCTCATCTCTTCTTCATGCTT
AATTTCAGCTTCTAACGCTTCCAAAACGAACTGTAGTTAAATTTGTATTT
TCGTGTAAAAAAATCAGTATTGAATTCATCCAATTTATCAAAAAAAAGTT
GATTTACTTCTCTTTCAAAGAAAAGGAGGTGATGATATTTATACAATAAG
TGTAGAGCCCTGAACCAATTACTGAAGTTTATCAAGAGTAATTTATTTTC
TTCAGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACGAA
AGACTTTCTACATTTCGTAAGTATCCAACTTCAATTTTTCCTTTGTTACT
ACGATCAAAGCACATATTATTTACACGTATTCGACCTTGATTTTGTGTTG
CTTTTGTTTGTGCTTCAAAGGGTTTCCAAACATTGAACTGTGAGGAATTA
ATACACATTTTTGGGCTGGAGTTGCTAAAGATTTTCATGATTTTAGCCAA
AAAGTTGTTTATGCATTTTGAGCCAAAATTGCTTAGTGGCTCCAAAAATC
TTCACTTATTACTTCATTTTATGCCCAAAATACCTCAAACTAGGTAGGCA
ATTTGATGCCAATTTAGGCAAAATATTTTTGATTTTCAAGGTAATATTGG
TTGCTTTTTAGTTCATACTCAGTATGGGCTATGGTTGATAAGCCAAGTTG
CTTCATTCTTTGGCCATTTTCAGGGCTGATGAAAAACTGAGTATATTTAT
GACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTGAA
AGACTTACTACTGCAACACGCAGACATCGATTCCANCTGTGTTTATTTAT
GACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTGAA
AGACTTACTACTGCAACACGCAGACATTGATAATTACATTGAAGACAAGT
GAGATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGAAT
CTATGACCATGCGGTGACTATTATTTATTATTTTGACCATCCGAATTTCG
TGAAAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACCTC
CTTTTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATTAA
ATCAAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCTGC
TTTTAAAAGGGTCCCGCGTTTTTAATATTTTTATCCGTCCTTGCTTTGCT
TTTATTTAAAACATGTTGTCGTTTTGCTATATGAAAATATATTTTTATGA
TCAGACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTATA
TTAAAATTCGTGATAATGTGTAAATTTCATAAAATATATACATGAAGCAA
AATAAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAAAA
CTACGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTTCT
TCAATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTGAC
AGTAACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGGGG
TTCATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAGGC
ATCTGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGCTG
CTCTCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTACCC
TTAGTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTATAC
CTTGTTCAAGTAAGAATTCAAAATTTCTATTGTTTGATACTTCCTATTTA
GGAAGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCGTC
TATACCATTGGAAAGAGCACGAGAAACTGAATTCCCATGGTGATTTTTAG
AAAATTCCACAGCCGGAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005622-exon-sc0000054-1575043694:240042..240197TCONS_00005622-exon-sc0000054-1575043694:240042..240197Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:238127..238279TCONS_00005622-exon-sc0000054-1575043694:238127..238279Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:237521..237921TCONS_00005622-exon-sc0000054-1575043694:237521..237921Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:237183..237295TCONS_00005622-exon-sc0000054-1575043694:237183..237295Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:236454..236575TCONS_00005622-exon-sc0000054-1575043694:236454..236575Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:234980..235037TCONS_00005622-exon-sc0000054-1575043694:234980..235037Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:232691..232976TCONS_00005622-exon-sc0000054-1575043694:232691..232976Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:232300..232482TCONS_00005622-exon-sc0000054-1575043694:232300..232482Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:228723..228794TCONS_00005622-exon-sc0000054-1575043694:228723..228794Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:228422..228526TCONS_00005622-exon-sc0000054-1575043694:228422..228526Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:227982..228042TCONS_00005622-exon-sc0000054-1575043694:227982..228042Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1575043694:226329..227425TCONS_00005622-exon-sc0000054-1575043694:226329..227425Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:240042..240197TCONS_00005622-exon-sc0000054-1510915933:240042..240197Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:238127..238279TCONS_00005622-exon-sc0000054-1510915933:238127..238279Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:237521..237921TCONS_00005622-exon-sc0000054-1510915933:237521..237921Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:237183..237295TCONS_00005622-exon-sc0000054-1510915933:237183..237295Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:236454..236575TCONS_00005622-exon-sc0000054-1510915933:236454..236575Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:234980..235037TCONS_00005622-exon-sc0000054-1510915933:234980..235037Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:232691..232976TCONS_00005622-exon-sc0000054-1510915933:232691..232976Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:232300..232482TCONS_00005622-exon-sc0000054-1510915933:232300..232482Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:228723..228794TCONS_00005622-exon-sc0000054-1510915933:228723..228794Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:228422..228526TCONS_00005622-exon-sc0000054-1510915933:228422..228526Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:227982..228042TCONS_00005622-exon-sc0000054-1510915933:227982..228042Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1510915933:226329..227425TCONS_00005622-exon-sc0000054-1510915933:226329..227425Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:240042..240197TCONS_00005622-exon-sc0000054-1491911889:240042..240197Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:238127..238279TCONS_00005622-exon-sc0000054-1491911889:238127..238279Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:237521..237921TCONS_00005622-exon-sc0000054-1491911889:237521..237921Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:237183..237295TCONS_00005622-exon-sc0000054-1491911889:237183..237295Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:236454..236575TCONS_00005622-exon-sc0000054-1491911889:236454..236575Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:234980..235037TCONS_00005622-exon-sc0000054-1491911889:234980..235037Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:232691..232976TCONS_00005622-exon-sc0000054-1491911889:232691..232976Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:232300..232482TCONS_00005622-exon-sc0000054-1491911889:232300..232482Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:228723..228794TCONS_00005622-exon-sc0000054-1491911889:228723..228794Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:228422..228526TCONS_00005622-exon-sc0000054-1491911889:228422..228526Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:227982..228042TCONS_00005622-exon-sc0000054-1491911889:227982..228042Clytia hemisphaericaexon
TCONS_00005622-exon-sc0000054-1491911889:226329..227425TCONS_00005622-exon-sc0000054-1491911889:226329..227425Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:226329..240197 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	1.81769e-06	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
Blast
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BLAST of TCONS_00005622 vs. Swiss-Prot (Human)
Match: RPGP2 (Rap1 GTPase-activating protein 2 OS=Homo sapiens GN=RAP1GAP2 PE=1 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 1.501e-19
Identity = 48/94 (51.06%), Postives = 61/94 (64.89%), Query Frame = 1 
Query:  100 RMMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGEL-FYKVDVASRDFVQNYGPPLPKNKLFK 378
             +MFHVST LP  + D Q+LQRKRHIGNDIV IIF      F P+ I SNFLH +I++Q +    E   YKV V +R+ V  +GPPLP   +F+
Sbjct:  330 EIMFHVSTKLPFTDGDAQQLQRKRHIGNDIVAIIFQEENTPFVPDMIASNFLHAYIVVQVETPGTETPSYKVSVTAREDVPTFGPPLPSPPVFQ 423
The following BLAST results are available for this feature:
BLAST of TCONS_00005622 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP21.501e-1951.06Rap1 GTPase-activating protein 2 OS=Homo sapiens G... [more]
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