TCONS_00005626 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005626
Unique NameTCONS_00005626
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2612

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=transcript|length=2612bp
tccattttttcaaaaattgagttatgaccataccgatgctttacacccca
ttttttatcgaatttttggcttaaatccatcaaaaaccaacctaaagtgN
TCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATG
ACCAGAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTGTATA
ATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAATCAAA
TTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGAGAAC
TATTTTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTATGGA
CCGCCACTTCCCAAGAATAAACTGTTCAAAAATGATTCATCTTTCCAACG
ATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGTTCAC
CCAAGTTCGCTTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGAAGAG
TTAGTGCATGATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAattttc
gaagaatccttttCAACGGCTTCTTCCCCTTAGACACAGTTTCACTCGAT
CGTCGCCACATACTCCGTCCTTGCAAAGGTCGATGAGTTTTGCAGCCGAC
CATATTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACG
CTCTTTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTG
GTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCTTTTGGCTATG
AAAAGCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATCAATCTTC
CGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCACTACC
TTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGAAACGC
AACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAACGACAGC
CTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTCTCCTG
AATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGCTTCAA
GTCACAGAATTTGACATGGAGGAGTTCTCAGCGTTGATCGAATACATCCA
AACAGGTTCGTGTGTGATCACACCAGAAACTGTGGTGGGTTTGGCGTGTG
CTGCTGAGTATTACCAAGTGGACGAGCTGATCGACCTTTGTGAACGCTCT
TGTCAACAAATGTGTGATATAAGAAACCTACCAGTTCTATTGACGTCAAT
CAGACAACATATTTTGCGTTACTCCATCGCTATCAAGCTTGAACAATATG
TGAAGTCGTTCACGGAATCTTGCGATAACgagttatttgattttttcgac
aTTTCGTCTCTGTCCCATGAAGTGTTCGACTGTTTGCTGACATCGACATC
TGGGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACGAAA
GACTTTCTACATTTCTGAACGCCAATGAAAGCGTGCGTTTGAAAGACTTA
CTACTGCAACACGCAGACATTGATAATTACATTGAAGACAAGTGAGATTC
ATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGAATCTATGAC
CATGCGGTGactattatttattattttgacCATCCGAATTTCGTGAAAAA
CGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACCTCCTTTTTC
ATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATTAAATCAAAA
GTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCTGCTTTTAAA
AGGGTCCCgcgtttttaatatttttatccgTCCTTGCTTTGCTTTTATTT
AAAACATGTTGTCGTTTTGctatatgaaaatatatttttatgatCAGACG
TCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTATATTAAAAT
TCGTGATAATGtgtaaatttcataaaatatataCATGAAGCAAAATAAAG
GCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAAAACTACGCA
TACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTTCTTCAATAG
TCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTGACAGTAACG
TTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGGGGTTCATAA
TTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAGGCATCTGGA
GAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGCTGCTCTCTG
TATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTACCCTTAGTAT
TTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTATACCTTGTTC
AAGTAAGAATtcaaaatttctattgtttgatACTTCCTATTTAGGAAGTA
GTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCGTCTATACCA
TTGGAAAGAGCACGAGAAACTGAATTCCCAtggtgatttttagaaaattc
cacAGCCGGAAT
Run BLAST on NCBI

protein sequence of TCONS_00005626-protein

>TCONS_00005626-protein ID=TCONS_00005626-protein|Name=TCONS_00005626-protein|organism=Clytia hemisphaerica|type=polypeptide|length=496bp
MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNF
LHVFIIIQPQILHGELFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRW
LYAKIINGERASYRSPKFASMQERTRRQLLEELVHDQACKEVQPSLKFSK
NPFQRLLPLRHSFTRSSPHTPSLQRSMSFAADHIGITSPADQLRRDLKRS
LACGISQYHDVIFLVGKERGGSVPAVKALLAMKSRVFNEMFFPGSYQSSA
PRRRSSVLSRVSPHYLSQHLRSSKRLSDFWKRNNNTTANNGSTTSTTTAS
SSNDSSPSKNNNPSPESSIVDIKEGQLSSKLQVTEFDMEEFSALIEYIQT
GSCVITPETVVGLACAAEYYQVDELIDLCERSCQQMCDIRNLPVLLTSIR
QHILRYSIAIKLEQYVKSFTESCDNELFDFFDISSLSHEVFDCLLTSTSG
VDDSKKREAIEEWHERLSTFLNANESVRLKDLLLQHADIDNYIEDK
Run BLAST on NCBI

transcript from alignment at sc0000054:226329..240199-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=transcript|length=13871bp|location=Sequence derived from alignment at sc0000054:226329..240199- (Clytia hemisphaerica)
TCCATTTTTTCAAAAATTGAGTTATGACCATACCGATGCTTTACACCCCA
TTTTTTATCGAATTTTTGGCTTAAATCCATCAAAAACCAACCTAAAGTGN
TCGTATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATG
ACCAGAAGGTAATATATTAAGATTGAATTCGATTAAAAACCCAGCTTCTG
TGGATTGAGTCGTCAATAAGACAGTTTTTTGGTTCTATGTCTTCACTTCA
GAATTGCCTACAAAATTTCTTAAATTTTTGAACTAAAGAGATTTTAATGA
ACTTTAGAGATTTTAATGAACTTTTTAATGAATGAATTTCTGAATGTTGT
TAACAAAGGTGTATGGGTAGAGATTTCAATTAATTTTCTTTTAGACATTC
ATAGCTCTTTGCTAATCAAAAGTACTAATCAATAAGACAGTATTACCAAA
GTATGAAATTCCAACCAAAGCCTTGTTATGTTGTGTTTAGTCACGTCGAA
AAAAAGTTTGGCAGACATGTGAAGTATATTTCATTTCCTTCCAAAGGAAA
ATGATTGATATTATTTGAACAGGATACCTAGCGAAGGAAATTGTTTAGAA
ATTTTAATATGATATTGCCATTTCATTTACTATACATTACGAGCAATAAA
AGGTAGTCTGACTTTCTCTTTGACTAATTTTGCAGTCTCAAAGTTTTTAA
AAATAGTTAAGATTTACTCGTTGTCATGGTTCCATACTTGAGACAACCAG
TTCTTTTTCTGTCTTACTTCCTGTGTTTTGAGGCATTTCTCCTTATTGTA
TATTGGTGTTTTGAATTTCCACAACAGCAGAATTCTTAAAATCCTTGATG
TTGGTGACATCACTAATACCCATTCACCAGACTTCCTTTTTAAAAACTAG
CCATTTCATCTCGAGTAGGAAGAATTCTCAAGGGTTTTTCTTTGTTTTCG
ACAGTCATTTTCTTTTTGACACGTAAAATAGCTGCTATGTCAACTCCAGT
TATATAGCTTAAAAGTTTTTAGTACTTTTGAGAGCACGCTGAAGAAAAAT
ATCAATATCAAATATCCCTTGTCAATTTAACAACAGCTTCAGTTTCTGAG
TTTGTTGAGTATCTTATGGTTAAGAAGAAGGAAGTAGACGAAAGAGGAAT
CAGATATGTGAGGTTTCCATGATTCATTTATATCACTGAGAAAAATTTGT
CTGCTCTTGTACGTGGTTTATAGTTCAACCATACAATGATTAAGTTTGTT
GATTGCTTTGTGTGCTCAGATAATTAACATACATGTACTGTGCCACATGC
CAAGACATGCTGTTTGATGATTGCAAAAAATGCCATCAAGAGAAGAAAAA
AATCATCATTTTTCATCATAATTGCAGTGATTGAGTGCTCATGACTTTTT
TAAGAGTTAATTGATTGGTTAGCTTGTTTCGAAAAAGAATAACCTGTTTA
TCTATACATTTTAATCATTGTCTTTTGACAAATTGCCTTTTGTGCGTTGA
TCTATTTATTTTTGTAAAAGTAATTATGCAAACACTGCAATAATGTTTCT
AAAATCATTTATCTGTGGTGATTAGCTCTTTTAAACGACCACATTAGTGA
GTTTTGAACCTAGGAAATATCAAGTGGCGTGCAGTGATTTTCCTGTATAC
AAACTCCTAACCATTTCAATCTGTCAAAGATCACTTTCTATGATTCTCTT
CAGTAATTCGAACATTCAAATTATATTTCTAGTTCGACTTTAACAAAAAA
CATAGTATTCTAAAGACCAATGAAAATAATCCTTTCAATAGTCTAATTGA
GATCCATTTATTGATTTTACAGTTTCTTATCTACATACTAGCCCTGTTTC
TAAATTGTTGAAAGTTCGTATTTTCCAAGAAAACCTTAACAAAAGCCATT
TCGTTTTTTCTGTTCACCAGCTCCAAAGGAAAAGACATATTGGGAATGAT
ATTGTTTGTATAATTTTCCTTGCACCTGGCGCTCGTTTCGACCCAAACTC
GATCAAATCAAATTTCCTTCATGTTTTCATCATAATTCAACCGCAGATTT
TACATGGAGAACTATTTTACAAGGTATCAATGTTATTTTCTTTTCACTCT
TTATTAAAGACATTAGATGGTAAGGTGGACCGATTGCTTGTCGTTTATTC
ACCTCATCACTCTGTAGTAGAAGGAGCTATTCGAAATGTACTTTTACTTA
TATATAAATTCGAATGTACACTGTACAATTGAATTCTTGAAACATGAAAC
AATTCACTGATATTTCTTTCACTCTCAGGTCGATGTTGCTTCGAGAGATT
TTGTCCAAAATTATGGACCGCCACTTCCCAAGAATAAACTGTTCAAAAAT
GTACGTTTGGCTTTAAATTTCACAGCCTCTCCCGCTGTTCACGTTCTTTG
TTCCTAAAATTTGTTGTAAGATTATTTGACAAGTTCACCTCCCTCTTGTA
AAAATCTTTTCAAAGGTTCCTTTAATATTGTATTGATGTAGGTAATATTT
TGAGCAAAGTCTCTTCCTTTTCTTGGAGGCTCATCAAGAAGGAAATACTG
CTTCCAGCGTTAGCCTTAGATCCTGAGGATCATTTTTTTTAGGATTCATC
TTTCCAACGATGGCTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTT
ACCGTTCACCCAAGTTCGCTTCCATGCAGGTAAAGAAGTCTTTATTTCTG
CTTCACCCTGTCTTGGTGATATGGAAGGTGTTAGAACTGATCAATGAGTC
CAATTAATGTTCATTGAGTTGGACACTTGTAGGTAAACGTTTGACTGGTT
CAATAGTTGTATCAAGACGAAAAAAACGGGTTGAAAAGAATCAAATGGGA
TTGTATTCGCTGGTTATGACAATCGCATATTATATTATTCTTGTTTTTGT
TCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAGTGCATGATCAAG
CTTGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAGAATCCTTTTCAA
CGGCTTCTTCCCCTTAGGTAAGCTTACGTATTTCGTCATGTCAATATATT
ATAATCAGTTAAAATAAGTGGAAACGAGTGGAATTTATAGTATTAACCTG
CATGTTAGAACCAAATAGATTCATTACAACAAAGAACTCCTTTTAGGAAT
AAGTTCACCAAGCTTCTTTCAATAGAAGAGAATGTAAAAATCTTGTTTTA
CTTACTGTTTTGTAAACTTAACAGAAATTTGTGTGTTTTAACCATCATCA
AAGATGGTTTTTAAAAGTATTTGATAATTGATTTTGAATTTTTCTACATT
ACACAGACACAGTTTCACTCGATCGTCGCCACATACTCCGTCCTTGCAAA
GGTATCAGGACAAAACATGCCATTCATGCATTCATTTCATTCACTCATTC
GCTCGCTCTAACTAACCCACACTCTAATCTATATAGCTCAAATCAACGCT
ATTATACATAGTATCTGAAATAGGGAGGTTTTATTTTCAGATGAATTTTC
GGATGTTTTCTGAGGTTTATTTCTGTGGAAACTTAATTGTTTTAGTTTTT
TTGGTTTATCTATCGTGTGTTCATCACATCATATTGTTTTACTCATACTG
TAGCTTTCTCTTCTCAATAACTAGGTCGATGAGTTTTGCAGCCGACCATA
TTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACGCTCT
TTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTGGTAA
GTTTCCACAAAATCTCCTGATCCCTGCGATTGATGATAAGTAAGTCTGCG
ACCGCAGTCGAAAGCTATCTACACGTTTTTTTTTTTATAAGGAACACGTT
TATAAGGAACTCGAGGCTGAAAGTAGTCTAAAAAATAAGGAATTGTTAAG
GAACTGCTCAGGCTAAGAATAAGAAAACAAGCTCTAAGGAACAGTAAAAG
TAAGAGTTTTCACTTGAACTAGCTATGTAAATAAGGAACTCAAAAGGAAC
TTTGAGGCTGAAATTTTCTGTAAAAATAAGGGAACTCCAGGCTCAGAGCA
AAGTTAAGGTTCCTTATATAAAAAAAAACGTGTAACCGAAGGTAGGGGAG
GGTGTCACTCTTTTTCCCTGGATTGCTCCACTTACCCTAGCCTGGTTAAC
CAAGCCAGTTTTTACAAGGCCAAGATACGGCTGAAGGCAATATAGCGTTA
TCGGTGCTTTAATGATTTTTATGATGTACGGAATTTTAAGTTTGCCTTGA
AAAACTGGCTTGGGCGAAGCGCGCGTTCATATTTTGAACGCAGAAGTCGG
TGAGACTCGGCGAGCATTTGGCCTCTTCTAATTGGCCATTATAGACCATG
TGATAAGAAACGAAATTTTTCGTTTGTTTTGAAAACGCTTTTCACTTCTC
AACGAAAGACTTTTTGAACATATTTTATTCTGTACTTTTTGCGTAAAAAG
AAAGATATGTTTTTCTCTCTCTCTCTCTTTGAAAAACCTTTATTTAACTG
TATGAAAGAGAAGTTGAGTAAATAGGGAGGAGGGTGTATTTATTTAACAA
ATTCCTTATTTTTATATTTTTGCTTTTTTATGCGAATGAGTTATGGGAAA
CCTTTTGTTAAAAAATATGTGTTGAACTAATTATACAAATTTATGTGCAT
TTACAAATACGTGCCCGGGAAAATTTGAAATTTCGTTTTTGTCAGTTGAT
AATAAACCGAGTTTACTTGTACTAAGCCAGATATTCAGTCACAACTTACC
ATCAGATTTTACTAAGTGACTGAATCAATCTGGATTAGATTTCTAGGCTA
CACTTACCCTTGATCCTTCTCTTAATTGCTGAGCATCAAGCAGAGAGACA
TCAAGTACCATTTTTGGAATCTTTAGTATGACCTGGGGTTTGAACCCACA
ACCTCGCGCATCGTAGTCGGATGCTCTACCACTGCACTGGTCCCTGCGAT
TAGTTAGATATGAAAAGTGAGTTTTTCCACCAATCTTCGTTGCTCAATCA
GATTTACATTTCCTAGTTTAAAGGTCCCAAAAAAGGGCCACATCAGCTGT
GCCTTTCGTAATATCAAGGGACTCAAAATGAAATTTATCAAGCTCCTCCC
GAATTTGAAATCTGTTTTCCTGAGGGAGAGGCCGCCTCTCTAGCTTTATA
TTCTTTTTCCAGGTAAAGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCT
CTTTTGGCTATGAAAAGCAGGTAAGATAGACATTGTCGCCACTGTTCATC
GTATTTCGATTTTATGATTGATACAGCCATTGCGTATTTTCAATGGTAAG
GAAAATTACTCTTAGGTTCCAAATAAATGGGGGAGGGGCTGGAATAAACG
GGGGTGGGGAAAATTTTCGAGATTTTAATAACCGGGGGGGGNAAAAAGAC
AAGGCGTGCACGGGGTGAAGTTCCCAAAGAGAAGGCGTGGTAAAGGTTAA
GGTGTGTGTCCAGGGCTCTTTTGAACTTATCGATAGAAATGTTTTTGAGG
TTTCTGATGCTCTTTGGCATAACATTAAAAAGTTTTGCACCTTGCACTGC
AAGTGTGCTGTCTCTAAATTTTGATGTTTGATTCTTTTTCAGTGGTTTTG
ATACCATTTACAGTAGGTACAATCTTTTCCATCACCTTCCAGACATACAT
TATTCTGTAGCGTTCTCTTCGCCTTTGAAGTGACACTCCCAATTGTTTGG
GGTGCCATTTATCTTTCGTAAGAAGGACTTTTGAATATCTTCAAGTCTCT
GAATGAGACCAACTGCATTTGGGCTCCACAGAATGGAGCAATATTCTAAT
ATTGGTATCACCAATGATTTATATACCATACAATTTAAAGATCGTGAAGA
AAAAGTTCTCAGGATCCAAGATGTTAAGTTTTTAGCCTTTTCGATTACTG
AAGTAATTTGCTTCTGAAATGTGCAATTACTGTCCATCAGGATTCCAAGG
TTTTTCACAACATCTTTGTTTTCAATCTCAACACCAGATGGTGATGTATA
GCTTGTTTGAGTCTTGATCTCATGGTTCTTTCCATAACGCAAGAGTTCAA
ATTTTATATCATTTAGCTTCATATTGTTGTCATCCGTCCATTTATATATT
CTATCAAGATCGTTTTGAAGTAGGACAGCATCTTCTAGAGNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNCAGAAGTGACACCATTCACTAG
CACTGATTGTTTTCTCTCTGTTAGGAAGGACTTTAGCCACTGTAATAATT
TTCCATCTATTCCTAGTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTAGGATGGACT
TTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTTATTTTTCGT
AGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAAATCTAGGTA
CACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTATCAGGTCAT
ATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTGAATCCATGT
TGATTGGGATTGAACAGATTATTTTCATCCGTGTGCTTTACAATATGTGC
TCTGAGTACTTTTTCAAATATCTTGATGACATGGGATGTTAGGGCTACTG
GTCTATAATTTGATGCCAGTGATCTGCTACCTCCTTTGTAGATTGGTGTG
ATTGTGCATCTTTTAAGTTCGTCTGGGACAATCCCTTTGTCCAAACTTTG
TCTCCAGAGGATACAAAGAGGAATAGAAAGTTCTTCTTTGCATTGTTTGA
GAAAGATTGCAGGGAAACCATCGGGACCTGGTGCTGCAGTTTGGGACAGA
TCGTTGATTGCTTTTATTAAATCATCTTCTGTACTACTACCGACTGTGCC
CGGACTTAGAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCT
GCTTAACCTTTTTCAACTTTCAGAGTGTTTAACGAGATGTTTTTCCCTGG
TTCGTATCAATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCG
TTTCTCCTCACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCA
GACTTTTGGAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAAC
ATCAACAACGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACA
ATAACCCTTCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTG
TCCTCTAAGGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGT
TTTGCCCATTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACC
TTTTAGAGTCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATT
CTCATATGTGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTT
TTAACTTTCCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTC
TCAGCGTTGATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGA
AACTGTGGTGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGC
TGATCGACCTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAAC
GTAAGTCGCCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAAC
AATATTTTAGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTG
GCGCACGAAACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAA
GTGACAATAGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTT
GTTTGCCTTTTTCTCAGTCTTTCTTATTATTAAATTCGCTTAGCGAAAGT
ATTACGATAGCCTTCCGTGTATGTATGTATGTGGCGAGACATTTTTTGGG
GCGCAAATTATGGCGTGGGCGTTTGGCTGCGGGCGTACTACGAGCAATAT
TCTAAAGATGGACTCACTCACAAAGATAAAAAATGATAAAAACAGGGATT
TTCTTAATAAATAAAATACGCCAGGCTAGTGCAAGAAGTGTAACCAAGTT
TTTGTAAACATTCATCGTGAGAACTTTTTAAATGGCTGCTTGATTATATT
CAGATATTGCACAAGCTTTTGTGCTTTTGAAAGTTGCAGCTGCTGTATAA
ATTTTAATCATGTTTTCTGGTCCTTTGTAGAGTGTTTAAAGAGGTTTAAT
ATTTGTTTACTACTAAGTATTTTATGTTTGTGTAGTGTTAGTGAATGCAC
CAACAAATTGATCATGCTTAATAGTATATATAAGGAGTTAATATTCCACA
ACAAACAACAACATTATTAACCCTCTCTTCTCTTCTTCTCCAAAACTACA
AACAGCAAAGGTATGATTTTTTTTTCTATTTTTCACCAGATAGTTATGTG
TTAATAGTGAAACCAGTTGTGACAAATAGTCAGTTTTAGCAAGTACCGTG
AGATTGGGTAACTTGCATCAGTGGAGGCTAACATGCATAGCCCTCAAATG
AAAGACCTGGCTGGTCATTAAAATACAACTACGCAGCTCCGCTCANCTTT
CATTTGAGGGCTATGCATGTTAGCCTCCACTGATGCAAGTTACCCAATCT
AACGGTACCGTGAAGTCGGGTAACTTGCATGGATGGAGGCTAACTTTTAT
TGCGTAGGCATCAAATGACTGACCAATCAAAGCAACAAAATTTCAAAACA
AATGAACTCCACTTGCAGCTTTAGCCTACCATTTTTGTTTTGATTTAACT
TTGTATTTTAATGACCAAACGGGTCATTCATTTGGCAAGCTACCCGATCT
CACGGTATTTCTTAGAAATCGTGTCAATTGTGAATTGAAACTCAGCAATC
ATTTTTGTATAATCGAAACGACCCTGCCTAGACACTGCCGTACAGTGTCA
TTGTACCATGATTTACGGTGGGTAAGGTGGGGTGTACAGTACAGCAGATT
TAAAATTAACCTATTTTCGCCGCCGTAAAAAGGACATTTAGATCCAGCCC
CACCGTACACCACCGCACAATGTACAGCGGTCCCTCGTTAATGATGACAG
TTTTTTATCTGATGAAGTTTGATTGGTGTTCGANNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNCCATTCACTAGCACTGATTGTTTTCTCTCTGTTA
GGATGGACTTTAGCCACTGTAATAATTTTCCATCTACTCCTAGTTTCTTT
ATTTTTCGTAGTACAATTGAATGGTCTACTTTTTCAAAAGCCTTTGAAAA
ATCTAGGTACACAACATCCGCATTAGCATCTTCGTCCAATATATTTAGTA
TCAGGTCATATTGTTCCAAAGGCTGACTCAAACATGAACGCCCGCTTCTG
AATCCATTATTCCTTATTAGGTCTGGAAAATTTTTCGAAAAATCAACAAG
CAGGGGGAGTACTAAGAGTACGGATTGTTCCCCGACTGTGCCCGGACTTA
GAGATATCCGATAAATTTGGTTGGTGTTTTCTAGTTAACTCTGCTTAACC
TTTTTCAACTTTCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATC
AATCTTCCGCGCCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCT
CACTACCTTTCGCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTG
GAAACGCAACAACAACACGACAGCTAACAACGGTTCTACAACATCAACAA
CGACAGCCTCCTCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCT
TCTCCTGAATCGAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAA
GGTAAGCTTGCTATAGCTTTAAGTTACATTCACTATTCATGTTTTGCCCA
TTTCGACTGTTCATTTTGTTTCACTTATGTACGCTTGCCACCTTTTAGAG
TCATTTCGCTTCTACATTGTTATATCTTATCATAATTAGATTCTCATATG
TGATCTAGACATAAAAATAACCCAGCTATAAAAATCTATTTTTTAACTTT
CCTTCTAAGCTTCAAGTCACAGAATTTGACATGGAGGAGTTCTCAGCGTT
GATCGAATACATCCAAACAGGTTCGTGTGTGATCACACCAGAAACTGTGG
TGGGTTTGGCGTGTGCTGCTGAGTATTACCAAGTGGACGAGCTGATCGAC
CTTTGTGAACGCTCTTGTCAACAAATGTGTGATATAAGAAACGTAAGTCG
CCTTGATCACGGTAATCATCGATTTGATGTAATGTGAAAAACAATATTTT
AGAGTAGGATCTAGAATGAAAGAAAGAAACGAAAGGAAAGTGGCGCACGA
AACTCTGTTTCAGTTTACCGTGTTTGTATCATTGGTGTAAAAGTGACAAT
AGAACACCCTTTCGATGTGGATTTGTGATACTTTTCAGATTTGTTTGCCT
TTTTCTCAGTCTTTCTTATTATTCGTTTTTAACTAATTTAGTCTAATAAA
ATTTATATTTATTTTAATGTATATCTCTTGGTTCAAATATATTAGGGAAA
TTGCAGTGTAAAAAAATAGGACATGGCTATTGTTTTGACATACAACTAAC
TGTTCTCGACACTGAATTGAAGTTTCATGCTTCATGTTTTTCATTGTTCT
TCTAGCTACCAGTTCTATTGACGTCAATCAGACAACATATTTTGCGTTAC
TCCATCGCTATCAAGCTTGAACAATATGTAAGTGTCTGTCATACAGTAGT
TGCTCCCTTTCTCACAAATGCCCTTATTATTCGTCCAAATTTAAGGAACA
AATGAATTTTAAAAGATTCGAATCTGAAATCGGCCAGCTATGCTTTCGTG
TTTGTCACGGTTATTTTAGACATCCAGTCTGAATCAAACGCTAATTAAGA
ATCAATTTATCTTTCACTTACAGGTGAAGTCGTTCACGGAATCTTGCGAT
AACGAGTTATTTGATTTTTTCGACATTTCGTCTCTGTCCCATGAAGTGTT
CGACTGTTTGCTGACATCGACATCTGGGGTAAGTTAGTTTTCACCCTCTT
AATTCCACGTCATGTGATTATTTTGAAGGGCTTGTAATAAAAGTTTCTTT
TGCCGTTAGAGCTCATGTTGCGGATTAAAACCCTGTCATTTCAATTTCTA
CTTTATTTTCATTATTGATGTTTGGCGATAGGCTCATCTCTTCTTCATGC
TTAATTTCAGCTTCTAACGCTTCCAAAACGAACTGTAGTTAAATTTGTAT
TTTCGTGTAAAAAAATCAGTATTGAATTCATCCAATTTATCAAAAAAAAG
TTGATTTACTTCTCTTTCAAAGAAAAGGAGGTGATGATATTTATACAATA
AGTGTAGAGCCCTGAACCAATTACTGAAGTTTATCAAGAGTAATTTATTT
TCTTCAGGTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACG
AAAGACTTTCTACATTTCGTAAGTATCCAACTTCAATTTTTCCTTTGTTA
CTACGATCAAAGCACATATTATTTACACGTATTCGACCTTGATTTTGTGT
TGCTTTTGTTTGTGCTTCAAAGGGTTTCCAAACATTGAACTGTGAGGAAT
TAATACACATTTTTGGGCTGGAGTTGCTAAAGATTTTCATGATTTTAGCC
AAAAAGTTGTTTATGCATTTTGAGCCAAAATTGCTTAGTGGCTCCAAAAA
TCTTCACTTATTACTTCATTTTATGCCCAAAATACCTCAAACTAGGTAGG
CAATTTGATGCCAATTTAGGCAAAATATTTTTGATTTTCAAGGTAATATT
GGTTGCTTTTTAGTTCATACTCAGTATGGGCTATGGTTGATAAGCCAAGT
TGCTTCATTCTTTGGCCATTTTCAGGGCTGATGAAAAACTGAGTATATTT
ATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTG
AAAGACTTACTACTGCAACACGCAGACATCGATTCCANCTGTGTTTATTT
ATGACTATTATTTTTCCAACACAGTGAACGCCAATGAAAGCGTGCGTTTG
AAAGACTTACTACTGCAACACGCAGACATTGATAATTACATTGAAGACAA
GTGAGATTCATCATAACAATATTGTGACGGTTCCAAAACCTGGTCCATGA
ATCTATGACCATGCGGTGACTATTATTTATTATTTTGACCATCCGAATTT
CGTGAAAAACGGGAACGGTATTAAACCCATGCTATTACTCCTATTTTACC
TCCTTTTTCATTTAGAGAACAAGCTTTCGATACCTGATTGATTGAAGATT
AAATCAAAAGTTTCCAAAGGAAATCGCTCAGTTTTTTGCACTTTTATTCT
GCTTTTAAAAGGGTCCCGCGTTTTTAATATTTTTATCCGTCCTTGCTTTG
CTTTTATTTAAAACATGTTGTCGTTTTGCTATATGAAAATATATTTTTAT
GATCAGACGTCCTTTTAATGTTAGTATCTCTTTACGGCGCTCACATGTTA
TATTAAAATTCGTGATAATGTGTAAATTTCATAAAATATATACATGAAGC
AAAATAAAGGCCAATTCTCGGGGTTTTTTGGGTGAAAAGAAAAAGACGAA
AACTACGCATACTTATATCGGGAATTATCTTTACTCCAGGTAGTATTCTT
CTTCAATAGTCGGAAATGCTCTTCTATGATTCGAAAAAAAGTCATTATTG
ACAGTAACGTTGGCTAGCAGATATTTTAAGCTTTTATTGCTTTTCTTTGG
GGTTCATAATTCATGCCAATACTATAGCAATCAAATGCATCTAAAACGAG
GCATCTGGAGAAGAAGAACAAAATGTAAAGTCAAATAATAGTAAATTAGC
TGCTCTCTGTATTTCTTTATATTGTTGTCTATTCACCCTTGGCTTTTTAC
CCTTAGTATTTATTATGGCAGTCAGGAGTAATACCTTAAACATGGCGTAT
ACCTTGTTCAAGTAAGAATTCAAAATTTCTATTGTTTGATACTTCCTATT
TAGGAAGTAGTGGGAATATTTTCTAAACTAGGAAAAAGGGCACTCTCTCG
TCTATACCATTGGAAAGAGCACGAGAAACTGAATTCCCATGGTGATTTTT
AGAAAATTCCACAGCCGGAAT

Coding sequence (CDS) from alignment at sc0000054:226329..240199-

>TCONS_00005626 ID=TCONS_00005626|Name=TCONS_00005626|organism=Clytia hemisphaerica|type=CDS|length=1491bp|location=Sequence derived from alignment at sc0000054:226329..240199- (Clytia hemisphaerica)
ATGATGTTTCACGTCTCAACTCTCTTGCCCATGGAAGAGCATGATGACCA
GAAGCTCCAAAGGAAAAGACATATTGGGAATGATATTGTTTGTATAATTT
TCCTTGCACCTGGCGCTCGTTTCGACCCAAACTCGATCAAATCAAATTTC
CTTCATGTTTTCATCATAATTCAACCGCAGATTTTACATGGAGAACTATT
TTACAAGGTCGATGTTGCTTCGAGAGATTTTGTCCAAAATTATGGACCGC
CACTTCCCAAGAATAAACTGTTCAAAAATGATTCATCTTTCCAACGATGG
CTGTATGCGAAGATAATCAATGGTGAAAGAGCGAGTTACCGTTCACCCAA
GTTCGCTTCCATGCAGGAACGTACTCGTCGGCAACTTTTAGAAGAGTTAG
TGCATGATCAAGCTTGTAAGGAAGTTCAGCCGTCCCTCAAATTTTCGAAG
AATCCTTTTCAACGGCTTCTTCCCCTTAGACACAGTTTCACTCGATCGTC
GCCACATACTCCGTCCTTGCAAAGGTCGATGAGTTTTGCAGCCGACCATA
TTGGTATAACATCACCGGCTGACCAGCTACGACGTGATCTTAAACGCTCT
TTAGCCTGTGGAATCAGTCAATATCATGACGTCATCTTTCTCGTTGGTAA
AGAGAGGGGAGGCTCAGTTCCCGCTGTAAAAGCTCTTTTGGCTATGAAAA
GCAGAGTGTTCAACGAGATGTTTTTCCCTGGTTCGTATCAATCTTCCGCG
CCTCGTCGTCGTTCGTCCGTCTTATCGCGCGTTTCTCCTCACTACCTTTC
GCAACACCTCCGTAGCAGCAAACGACTGTCAGACTTTTGGAAACGCAACA
ACAACACGACAGCTAACAACGGTTCTACAACATCAACAACGACAGCCTCC
TCATCAAATGATTCCTCTCCTTCTAAAAACAATAACCCTTCTCCTGAATC
GAGTATCGTTGATATAAAGGAAGGTCAGCTGTCCTCTAAGCTTCAAGTCA
CAGAATTTGACATGGAGGAGTTCTCAGCGTTGATCGAATACATCCAAACA
GGTTCGTGTGTGATCACACCAGAAACTGTGGTGGGTTTGGCGTGTGCTGC
TGAGTATTACCAAGTGGACGAGCTGATCGACCTTTGTGAACGCTCTTGTC
AACAAATGTGTGATATAAGAAACCTACCAGTTCTATTGACGTCAATCAGA
CAACATATTTTGCGTTACTCCATCGCTATCAAGCTTGAACAATATGTGAA
GTCGTTCACGGAATCTTGCGATAACGAGTTATTTGATTTTTTCGACATTT
CGTCTCTGTCCCATGAAGTGTTCGACTGTTTGCTGACATCGACATCTGGG
GTTGACGATTCAAAGAAGAGGGAGGCAATAGAAGAATGGCACGAAAGACT
TTCTACATTTCTGAACGCCAATGAAAGCGTGCGTTTGAAAGACTTACTAC
TGCAACACGCAGACATTGATAATTACATTGAAGACAAGTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003188XLOC_003188Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005626-proteinTCONS_00005626-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005626-exon-sc0000054-1575043694:240042..240199TCONS_00005626-exon-sc0000054-1575043694:240042..240199Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:238127..238279TCONS_00005626-exon-sc0000054-1575043694:238127..238279Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:237850..237921TCONS_00005626-exon-sc0000054-1575043694:237850..237921Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:237521..237607TCONS_00005626-exon-sc0000054-1575043694:237521..237607Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:237183..237295TCONS_00005626-exon-sc0000054-1575043694:237183..237295Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:236849..236893TCONS_00005626-exon-sc0000054-1575043694:236849..236893Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:236454..236575TCONS_00005626-exon-sc0000054-1575043694:236454..236575Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:234980..235037TCONS_00005626-exon-sc0000054-1575043694:234980..235037Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:229599..229884TCONS_00005626-exon-sc0000054-1575043694:229599..229884Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:229208..229390TCONS_00005626-exon-sc0000054-1575043694:229208..229390Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:228723..228794TCONS_00005626-exon-sc0000054-1575043694:228723..228794Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:228422..228526TCONS_00005626-exon-sc0000054-1575043694:228422..228526Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:227982..228042TCONS_00005626-exon-sc0000054-1575043694:227982..228042Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:227473..227525TCONS_00005626-exon-sc0000054-1575043694:227473..227525Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1575043694:226329..227372TCONS_00005626-exon-sc0000054-1575043694:226329..227372Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:240042..240199TCONS_00005626-exon-sc0000054-1510915933:240042..240199Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:238127..238279TCONS_00005626-exon-sc0000054-1510915933:238127..238279Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:237850..237921TCONS_00005626-exon-sc0000054-1510915933:237850..237921Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:237521..237607TCONS_00005626-exon-sc0000054-1510915933:237521..237607Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:237183..237295TCONS_00005626-exon-sc0000054-1510915933:237183..237295Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:236849..236893TCONS_00005626-exon-sc0000054-1510915933:236849..236893Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:236454..236575TCONS_00005626-exon-sc0000054-1510915933:236454..236575Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:234980..235037TCONS_00005626-exon-sc0000054-1510915933:234980..235037Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:229599..229884TCONS_00005626-exon-sc0000054-1510915933:229599..229884Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:229208..229390TCONS_00005626-exon-sc0000054-1510915933:229208..229390Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:228723..228794TCONS_00005626-exon-sc0000054-1510915933:228723..228794Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:228422..228526TCONS_00005626-exon-sc0000054-1510915933:228422..228526Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:227982..228042TCONS_00005626-exon-sc0000054-1510915933:227982..228042Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:227473..227525TCONS_00005626-exon-sc0000054-1510915933:227473..227525Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1510915933:226329..227372TCONS_00005626-exon-sc0000054-1510915933:226329..227372Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:240042..240199TCONS_00005626-exon-sc0000054-1491911889:240042..240199Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:238127..238279TCONS_00005626-exon-sc0000054-1491911889:238127..238279Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:237850..237921TCONS_00005626-exon-sc0000054-1491911889:237850..237921Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:237521..237607TCONS_00005626-exon-sc0000054-1491911889:237521..237607Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:237183..237295TCONS_00005626-exon-sc0000054-1491911889:237183..237295Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:236849..236893TCONS_00005626-exon-sc0000054-1491911889:236849..236893Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:236454..236575TCONS_00005626-exon-sc0000054-1491911889:236454..236575Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:234980..235037TCONS_00005626-exon-sc0000054-1491911889:234980..235037Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:229599..229884TCONS_00005626-exon-sc0000054-1491911889:229599..229884Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:229208..229390TCONS_00005626-exon-sc0000054-1491911889:229208..229390Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:228723..228794TCONS_00005626-exon-sc0000054-1491911889:228723..228794Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:228422..228526TCONS_00005626-exon-sc0000054-1491911889:228422..228526Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:227982..228042TCONS_00005626-exon-sc0000054-1491911889:227982..228042Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:227473..227525TCONS_00005626-exon-sc0000054-1491911889:227473..227525Clytia hemisphaericaexon
TCONS_00005626-exon-sc0000054-1491911889:226329..227372TCONS_00005626-exon-sc0000054-1491911889:226329..227372Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:226329..240199 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.43116	0.863067	0.578487	1.1262	17.9421	13.3654	12.8996	16.2987	13.5388	15.6023	8.98963	13.9114	7.82054	9.94843	10.0422	9.64122	7.95057	9.17076	12.3801	11.2245	4.24802	3.00197	4.16469	4.79667	4.52842	3.87803	7.58124	6.35458	5.82891	7.38903
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000210BTB/POZ_dom
IPR000331Rap_GAP_dom
IPR011333SKP1/BTB/POZ
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO:0005096GTPase activator activity
Vocabulary: Biological Process
TermDefinition
GO:0051056regulation of small GTPase mediated signal transduction
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0051056 regulation of small GTPase mediated signal transduction
molecular_function GO:0005096 GTPase activator activity
molecular_function GO:0005515 protein binding
Blast
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BLAST of TCONS_00005626 vs. Swiss-Prot (Human)
Match: RPGP1 (Rap1 GTPase-activating protein 1 OS=Homo sapiens GN=RAP1GAP PE=1 SV=2)

HSP 1 Score: 133.265 bits (334), Expect = 4.534e-32
Identity = 68/144 (47.22%), Postives = 91/144 (63.19%), Query Frame = 3 
Query:  105 MMFHVSTLLPMEEHDDQKLQRKRHIGNDIVCIIFLAPGARFDPNSIKSNFLHVFIIIQPQILHGE-LFYKVDVASRDFVQNYGPPLPKNKLFKNDSSFQRWLYAKIINGERASYRSPKFASMQERTRRQLLEEL-----VHDQA 518
            +MFHVST LP  E D Q+LQRKRHIGNDIV ++F      F P+ I SNFLH ++++Q +    +   YKV V +RD V  +GPPLP   +F+    FQ +L  K+IN E A Y++ KFA ++ERTR  LLE L     +H Q+
Sbjct:  264 IMFHVSTKLPYTEGDAQQLQRKRHIGNDIVAVVFQDENTPFVPDMIASNFLHAYVVVQAEGGGPDGPLYKVSVTARDDVPFFGPPLPDPAVFRKGPEFQEFLLTKLINAEYACYKAEKFAKLEERTRAALLETLYEELHIHSQS 407
The following BLAST results are available for this feature:
BLAST of TCONS_00005626 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
RPGP14.534e-3247.22Rap1 GTPase-activating protein 1 OS=Homo sapiens G... [more]
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