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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005686 ID=TCONS_00005686|Name=TCONS_00005686|organism=Clytia hemisphaerica|type=transcript|length=1362bp
CTTCAGTATGGCAGATAGAATGGAGCTTAGCGTTATTAATTTTTAATCGA
AAGTCTCCTTCTTCAGTATCGACTCGACTGAAACCACGTCGTATCATTTT
GCGAAATAGACTTCTGTACGTTGAATCAAGCTTATCAAATTGCGCTGCGG
TCAAATTCCAATTCTGACAAGAGTACGTTACTAGTCTACTTCTCACAAAG
GAGTTAAAAAATTTAACTCTTGTAGATAGATAAATTCCATGATTCTGAAG
GAGGTTTGTCATACTTGCGAATTTTCCAAGTGCCATCTGAATGCGATAGT
TGATTTTAATGTCTACGGTATTAGGCGCATTTGGAGAGATGTGCGAACCA
AGATATTTGAACTGGCCTGAATTTTTCAACGGGACATTGCGAATATCAAT
GATGCTATCAGGATAGTTTGTCTCGAGGTagcagtgatagagaatcatcg
TCTCGGTTTTGGTTTCGTTGATTCGAATTTAACGAATATGTTGTCTAGCA
GTATTGACGCTGATTGTAGAGATGAAAGATCAGTCAAGAAAAGTAGCAGG
TCGTCTGCGAATCCACACCATGGGAGTGATGATTCACCTGATAGCTTCTC
GTTCTCATTTCGCATTCGAAGTCGTTCTGCTCTAGAGATCGATCTTGGAT
TGATTCCATACTTATGTTTAAAGAAACTAACCTCGTCAGTAAAgttacat
tttttaataaaaattcgCATGACGTAGTCAATGTAGAGGTTGAGCAACAG
ACTCTCAAGTCCTCCTTGACGAACACCTGATGATACATGGAATGAAGTGT
TCGCTTCATAGAAGGTCAAGGATATTTGACTGTATAACTTCTCTAAGATA
TCGAATAGTTTTAGGTCAGCATTATCAGGAAAGCGAATTGTGATTGATTG
AAATAGCCAGTCTCTGGGTATATGGTCAAATGCAGCCGTTTAATCAACAA
ACAGTAAGTAGAGTGGTTGCGTTTTTTGATTGGATATTTGTTGTGTTCTT
TTGATAGTGAAAATTCCGTCTGTTGTACCTCTGTTTTTTCTAAATCCGTT
TTGTTCATCTGTGATTTGTGCCTCATACCACGGTCTGATTCGATCCAGTA
TGATATTTATCATCAATTTACATACAGTCGAGCCAATGCTGATTCCCCGA
TATTTGGTTGGGTCGGATTTGGAGCCTTTCCCTTTCCAAAGCGTTTTCCA
TCTCGAGTTTCTCCAGGCGCTTGGTAGATCCAGAttagaccaaagatttt
ctGCCAATTTATGGATAACTTGGAGCATAATCGGGTGCTCGCATTTTTTG
AGGATTTCAGGCTCATTGTCATTGCTAGCTTTGTCCTTTGTCCTCGATGA
ACCAAATACCAG Run BLAST on NCBI protein sequence of TCONS_00005686-protein >TCONS_00005686-protein ID=TCONS_00005686-protein|Name=TCONS_00005686-protein|organism=Clytia hemisphaerica|type=polypeptide|length=140bp
LVFGSSRTKDKASNDNEPEILKKCEHPIMLQVIHKLAENLWSNLDLPSAW
RNSRWKTLWKGKGSKSDPTKYRGISIGSTVCKLMINIILDRIRPWYEAQI
TDEQNGFRKNRGTTDGIFTIKRTQQISNQKTQPLYLLFVD Run BLAST on NCBI transcript from alignment at sc0000054:173257..174618 Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005686 ID=TCONS_00005686|Name=TCONS_00005686|organism=Clytia hemisphaerica|type=transcript|length=1362bp|location=Sequence derived from alignment at sc0000054:173257..174618 (Clytia hemisphaerica)
CTGGTATTTGGTTCATCGAGGACAAAGGACAAAGCTAGCAATGACAATGA
GCCTGAAATCCTCAAAAAATGCGAGCACCCGATTATGCTCCAAGTTATCC
ATAAATTGGCagaaaatctttggtctaaTCTGGATCTACCAAGCGCCTGG
AGAAACTCGAGATGGAAAACGCTTTGGAAAGGGAAAGGCTCCAAATCCGA
CCCAACCAAATATCGGGGAATCAGCATTGGCTCGACTGTATGTAAATTGA
TGATAAATATCATACTGGATCGAATCAGACCGTGGTATGAGGCACAAATC
ACAGATGAACAAAACGGATTTAGAAAAAACAGAGGTACAACAGACGGAAT
TTTCACTATCAAAAGAACACAACAAATATCCAATCAAAAAACGCAACCAC
TCTACTTACTGTTTGTTGATTAAACGGCTGCATTTGACCATATACCCAGA
GACTGGCTATTTCAATCAATCACAATTCGCTTTCCTGATAATGCTGACCT
AAAACTATTCGATATCTTAGAGAAGTTATACAGTCAAATATCCTTGACCT
TCTATGAAGCGAACACTTCATTCCATGTATCATCAGGTGTTCGTCAAGGA
GGACTTGAGAGTCTGTTGCTCAACCTCTACATTGACTACGTCATGcgaat
ttttattaaaaaatgtaacTTTACTGACGAGGTTAGTTTCTTTAAACATA
AGTATGGAATCAATCCAAGATCGATCTCTAGAGCAGAACGACTTCGAATG
CGAAATGAGAACGAGAAGCTATCAGGTGAATCATCACTCCCATGGTGTGG
ATTCGCAGACGACCTGCTACTTTTCTTGACTGATCTTTCATCTCTACAAT
CAGCGTCAATACTGCTAGACAACATATTCGTTAAATTCGAATCAACGAAA
CCAAAACCGAGAcgatgattctctatcactgctACCTCGAGACAAACTAT
CCTGATAGCATCATTGATATTCGCAATGTCCCGTTGAAAAATTCAGGCCA
GTTCAAATATCTTGGTTCGCACATCTCTCCAAATGCGCCTAATACCGTAG
ACATTAAAATCAACTATCGCATTCAGATGGCACTTGGAAAATTCGCAAGT
ATGACAAACCTCCTTCAGAATCATGGAATTTATCTATCTACAAGAGTTAA
ATTTTTTAACTCCTTTGTGAGAAGTAGACTAGTAACGTACTCTTGTCAGA
ATTGGAATTTGACCGCAGCGCAATTTGATAAGCTTGATTCAACGTACAGA
AGTCTATTTCGCAAAATGATACGACGTGGTTTCAGTCGAGTCGATACTGA
AGAAGGAGACTTTCGATTAAAAATTAATAACGCTAAGCTCCATTCTATCT
GCCATACTGAAG Coding sequence (CDS) from alignment at sc0000054:173257..174618 >TCONS_00005686 ID=TCONS_00005686|Name=TCONS_00005686|organism=Clytia hemisphaerica|type=CDS|length=423bp|location=Sequence derived from alignment at sc0000054:173257..174618 (Clytia hemisphaerica)
CTGGTATTTGGTTCATCGAGGACAAAGGACAAAGCTAGCAATGACAATGA
GCCTGAAATCCTCAAAAAATGCGAGCACCCGATTATGCTCCAAGTTATCC
ATAAATTGGCagaaaatctttggtctaaTCTGGATCTACCAAGCGCCTGG
AGAAACTCGAGATGGAAAACGCTTTGGAAAGGGAAAGGCTCCAAATCCGA
CCCAACCAAATATCGGGGAATCAGCATTGGCTCGACTGTATGTAAATTGA
TGATAAATATCATACTGGATCGAATCAGACCGTGGTATGAGGCACAAATC
ACAGATGAACAAAACGGATTTAGAAAAAACAGAGGTACAACAGACGGAAT
TTTCACTATCAAAAGAACACAACAAATATCCAATCAAAAAACGCAACCAC
TCTACTTACTGTTTGTTGATTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005686-exon-sc0000054-1491911889:173257..174618 | TCONS_00005686-exon-sc0000054-1491911889:173257..174618 | Clytia hemisphaerica | exon |
| TCONS_00005686-exon-sc0000054-1510915933:173257..174618 | TCONS_00005686-exon-sc0000054-1510915933:173257..174618 | Clytia hemisphaerica | exon |
| TCONS_00005686-exon-sc0000054-1575043694:173257..174618 | TCONS_00005686-exon-sc0000054-1575043694:173257..174618 | Clytia hemisphaerica | exon |
The following polypeptide feature(s) derives from this transcript:
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000054 | supercontig | sc0000054:173257..174618 . |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR000477 | RT_dom |
Blast
The following BLAST results are available for this feature:
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