TCONS_00005687 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005687
Unique NameTCONS_00005687
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length843

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005687 ID=TCONS_00005687|Name=TCONS_00005687|organism=Clytia hemisphaerica|type=transcript|length=843bp
aaaagagggacaaaagaaaagagagaaaCCTTTGGTGGGCAAgcctgggc
agaaattaaaattactaaatgtagacgggccttaaatttcaaaacaaagg
ctgaataaagtctaaaccaggctctatccgatctgtcaatcaaaacaaac
taatcgagaacaaaaaaaaatattgcttgcgaaaacgaaagtgacacaca
aaaaacaaacaaacagactaCGGTTATTAATATTTagataagaatatcag
ggtgagatttcggagtAATAGGCCtattacaatagaaaaataagaataat
tctcaccctcagccaacgtacactattcttataaaagaaagcgtGTAATT
AAAAATAGTTCAACTTGATATGAATGTTTTATGATTTTCCctaaaagaaa
attcttttgtaaATTTACTAACTGGAGGCTATACAAGCCTTGTTGCAAGT
CACGTGTTACTATGCAGGTCCTCCTCGAAGTATTTCAAATGTCAAGGATA
ATCCGTACTTGGGCATCGATATTTTTTTCTGCATTGCTACACATGCTGTG
CATACAGAACCATAATCGAAACCTTGTCAATTGTTTTTTCAtcgtaaaat
ttaaaagagaaaaatcttTCATCAATTGAAATTCTCCAAAGACTGCTGCA
CCTCTACCAATTTGATTCAGTATATTTTCCGTGGCTTCTTTTGAGAAATT
CATCTCACTGGCCAGCTTCAAATATTTCAATAGGATTTTTGGTCGTTTCT
cttgtattttttgaataaattcttCGATCCTCTTCAATAGTCGGTCAACT
TTATATTCAGCTGCAAGAGTCGCCAACGAAAGCAAGTCAACTT
Run BLAST on NCBI

protein sequence of TCONS_00005687-protein

>TCONS_00005687-protein ID=TCONS_00005687-protein|Name=TCONS_00005687-protein|organism=Clytia hemisphaerica|type=polypeptide|length=118bp
VDLLSLATLAAEYKVDRLLKRIEEFIQKIQEKRPKILLKYLKLASEMNFS
KEATENILNQIGRGAAVFGEFQLMKDFSLLNFTMKKQLTRFRLWFCMHSM
CSNAEKNIDAQVRIILDI
Run BLAST on NCBI

transcript from alignment at sc0000054:205414..206256

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005687 ID=TCONS_00005687|Name=TCONS_00005687|organism=Clytia hemisphaerica|type=transcript|length=843bp|location=Sequence derived from alignment at sc0000054:205414..206256 (Clytia hemisphaerica)
AAGTTGACTTGCTTTCGTTGGCGACTCTTGCAGCTGAATATAAAGTTGAC
CGACTATTGAAGAGGATCGaagaatttattcaaaaaatacaagAGAAACG
ACCAAAAATCCTATTGAAATATTTGAAGCTGGCCAGTGAGATGAATTTCT
CAAAAGAAGCCACGGAAAATATACTGAATCAAATTGGTAGAGGTGCAGCA
GTCTTTGGAGAATTTCAATTGATGAaagatttttctcttttaaattttac
gaTGAAAAAACAATTGACAAGGTTTCGATTATGGTTCTGTATGCACAGCA
TGTGTAGCAATGCAGAAAAAAATATCGATGCCCAAGTACGGATTATCCTT
GACATTTGAAATACTTCGAGGAGGACCTGCATAGTAACACGTGACTTGCA
ACAAGGCTTGTATAGCCTCCAGTTAGTAAATttacaaaagaattttcttt
tagGGAAAATCATAAAACATTCATATCAAGTTGAACTATTTTTAATTACa
cgctttcttttataagaatagtgtacgttggctgagggtgagaattattc
ttatttttctattgtaataGGCCTATTactccgaaatctcaccctgatat
tcttatctAAATATTAATAACCGtagtctgtttgtttgttttttgtgtgt
cactttcgttttcgcaagcaatatttttttttgttctcgattagtttgtt
ttgattgacagatcggatagagcctggtttagactttattcagcctttgt
tttgaaatttaaggcccgtctacatttagtaattttaatttctgcccagg
cTTGCCCACCAAAGGtttctctcttttcttttgtccctctttt

Coding sequence (CDS) from alignment at sc0000054:205414..206256

>TCONS_00005687 ID=TCONS_00005687|Name=TCONS_00005687|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000054:205414..206256 (Clytia hemisphaerica)
GTTGACTTGCTTTCGTTGGCGACTCTTGCAGCTGAATATAAAGTTGACCG
ACTATTGAAGAGGATCGaagaatttattcaaaaaatacaagAGAAACGAC
CAAAAATCCTATTGAAATATTTGAAGCTGGCCAGTGAGATGAATTTCTCA
AAAGAAGCCACGGAAAATATACTGAATCAAATTGGTAGAGGTGCAGCAGT
CTTTGGAGAATTTCAATTGATGAaagatttttctcttttaaattttacga
TGAAAAAACAATTGACAAGGTTTCGATTATGGTTCTGTATGCACAGCATG
TGTAGCAATGCAGAAAAAAATATCGATGCCCAAGTACGGATTATCCTTGA
CATTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003212XLOC_003212Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005687-proteinTCONS_00005687-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005687-exon-sc0000054-1491911889:205414..206256TCONS_00005687-exon-sc0000054-1491911889:205414..206256Clytia hemisphaericaexon
TCONS_00005687-exon-sc0000054-1510915933:205414..206256TCONS_00005687-exon-sc0000054-1510915933:205414..206256Clytia hemisphaericaexon
TCONS_00005687-exon-sc0000054-1575043694:205414..206256TCONS_00005687-exon-sc0000054-1575043694:205414..206256Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000054supercontigsc0000054:205414..206256 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.872126	0.488179	1.12889	0.57669	0.996082	0.450341	0.541479	1.18478	1.56194	3.03919	1.91596	1.51985	1.82028	0.774322	8.43164	6.33624	5.60378	4.74392	5.57924	3.13127	2.00255	1.8912	2.36887	4.06262	1.65051	2.33105	21.3347	17.8233	2.66993	2.2123
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005687 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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