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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005743 ID=TCONS_00005743|Name=TCONS_00005743|organism=Clytia hemisphaerica|type=transcript|length=3255bpRun BLAST on NCBI protein sequence of TCONS_00005743-protein >TCONS_00005743-protein ID=TCONS_00005743-protein|Name=TCONS_00005743-protein|organism=Clytia hemisphaerica|type=polypeptide|length=816bp MAEAVKVIVRCRPLNTREKNLKCQTIVQMDSSIGQCRLLKPGEKDSATPKRun BLAST on NCBI transcript from alignment at sc0000059:681900..696905+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005743 ID=TCONS_00005743|Name=TCONS_00005743|organism=Clytia hemisphaerica|type=transcript|length=15006bp|location=Sequence derived from alignment at sc0000059:681900..696905+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:681900..696905+ >TCONS_00005743 ID=TCONS_00005743|Name=TCONS_00005743|organism=Clytia hemisphaerica|type=CDS|length=2451bp|location=Sequence derived from alignment at sc0000059:681900..696905+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005743 vs. Swiss-Prot (Human)
Match: KIF17 (Kinesin-like protein KIF17 OS=Homo sapiens GN=KIF17 PE=2 SV=3) HSP 1 Score: 566.229 bits (1458), Expect = 0.000e+0 Identity = 283/456 (62.06%), Postives = 348/456 (76.32%), Query Frame = 1
Query: 100 AEAVKVIVRCRPLNTREKNLKCQTIVQMDSSIGQCRLLKPGEKDSATPKAFTFDGVFYTDSITESIYSDICFPLVEGCVEGYNGTVFAYGQTGCGKSFTMQGIEDPPTQRGIIPRAFEHIFESIQVADNTKFLVHASYLEIYNEEIRXXXXXXXXXXXXXXEHPDRGVYVKDLSLVPCHNSKDMDNVMNKGSSNRSVGATLMNADSSRSHSIFTIFVETCETGTDGEEHIRAGKLNLVDLAGSERQAKTGAEGSRLKEATKINLSLSALGNVISALVDGKSKHIPYRDSKLTRLLQDSLGGNTKTLMVACISPADNNYDETLSTLRYANRAKNIKNKPKINEDPKDALLRQYQDEITVLKQMLMGEIPMSPEMLLKLGLSGAQAQALSPTKSVGAVEPEEPTPQSTEASEKEAERIKAEYEEKLVQMQKKFEEEQGNKKRLEEEISKLQQERDLKL 1467
+EAVKV+VRCRP+N RE+ L+CQ +V +D + QC + PG D PK FTFDG ++ D +TE IY++I +PLVEG EGYNGT+FAYGQTG GKSFTMQG+ DPP+QRGIIPRAFEH+FES+Q A+NTKFLV ASYLEIYNE++RDLL D K+KL++KEHP++GVYVK LS+ H+ +++M G NRSVG TLMN DSSRSHSIFTI +E G++H+RAGKLNLVDLAGSERQ+KTGA G RLKEATKINLSLSALGNVISALVDG+ KH+PYRDSKLTRLLQDSLGGNTKTLMVAC+SPADNNYDETLSTLRYANRAKNI+NKP+INEDPKDALLR+YQ+EI LK +L + +M + Q P V E P P E E + I+ EYEE+L +++ ++ EQ ++ RLEE+I+ ++ D++L
Sbjct: 3 SEAVKVVVRCRPMNQRERELRCQPVVTVDCARAQCCIQNPGAADEP-PKQFTFDGAYHVDHVTEQIYNEIAYPLVEGVTEGYNGTIFAYGQTGSGKSFTMQGLPDPPSQRGIIPRAFEHVFESVQCAENTKFLVRASYLEIYNEDVRDLLGADTKQKLELKEHPEKGVYVKGLSMHTVHSVAQCEHIMETGWKNRSVGYTLMNKDSSRSHSIFTISIEMSAVDERGKDHLRAGKLNLVDLAGSERQSKTGATGERLKEATKINLSLSALGNVISALVDGRCKHVPYRDSKLTRLLQDSLGGNTKTLMVACLSPADNNYDETLSTLRYANRAKNIRNKPRINEDPKDALLREYQEEIKKLKAIL------TQQMSPSSLSALLSRQV--PPDPVQVEEKLLPQPVIQHDVEAEKQLIREEYEERLARLKADYKAEQESRARLEEDITAMRNSYDVRL 449 HSP 2 Score: 142.124 bits (357), Expect = 3.560e-34 Identity = 91/223 (40.81%), Postives = 146/223 (65.47%), Query Frame = 1
Query: 1669 QTEAMQKLDTLQKQLVGGEKKSNTELXXXXXXXXEYASEREKQMMSDIKKWE---GEKIMIKVYDNLQEEIKLKGEDVAQLEKALDNSNMEIQDLQSEFQAERTDYLDTIRRLERDMELQSLILQKVQPLIRRDCNYSNIDRMKVLSEYDDDLGRWKVPDVQVEKISLP-KPGAGLDNGMNRSNKSPESSDYTSRDDVDRYGQHIRSTQNEHYANQYFKPKRA 2325
Q + + +L L++Q+VGGE+ N +LK+KHK+RK YA ER KQ+++ ++ + G+ +++ VYD++QEE++ K + + ++++ L + +EI+DLQSEFQ E+ DYL TIRR ERD L +L++VQPLIRRDCNYSN++++ S +D+D G WK+P + K SLP G N R + ++ + D DRY + + +E+ A+ YF+ KRA
Sbjct: 738 QQQVLARLQLLEQQVVGGEQAKNKDLKEKHKRRKRYADERRKQLVAALQNSDEDSGDWVLLNVYDSIQEEVRAKSKLLEKMQRKLRAAEVEIKDLQSEFQLEKIDYLATIRRQERDSMLLQQLLEQVQPLIRRDCNYSNLEKILRESCWDEDNGFWKIPHPVITKTSLPVAVSTGPQNKPARKTSAADNGEPNMED--DRYRLMLSRSNSENIASNYFRSKRA 958 The following BLAST results are available for this feature:
BLAST of TCONS_00005743 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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