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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005756 ID=TCONS_00005756|Name=TCONS_00005756|organism=Clytia hemisphaerica|type=transcript|length=4255bpRun BLAST on NCBI protein sequence of TCONS_00005756-protein >TCONS_00005756-protein ID=TCONS_00005756-protein|Name=TCONS_00005756-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1101bp MSSKRKGIESNSSGKKFKAEKDDFSQSTFEEDLALMEAISEESQSQKTDSRun BLAST on NCBI transcript from alignment at sc0000059:137655..181636- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005756 ID=TCONS_00005756|Name=TCONS_00005756|organism=Clytia hemisphaerica|type=transcript|length=43982bp|location=Sequence derived from alignment at sc0000059:137655..181636- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000059:137655..181636- >TCONS_00005756 ID=TCONS_00005756|Name=TCONS_00005756|organism=Clytia hemisphaerica|type=CDS|length=3306bp|location=Sequence derived from alignment at sc0000059:137655..181636- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005756 vs. Swiss-Prot (Human)
Match: DPOD1 (DNA polymerase delta catalytic subunit OS=Homo sapiens GN=POLD1 PE=1 SV=2) HSP 1 Score: 1402.5 bits (3629), Expect = 0.000e+0 Identity = 654/1076 (60.78%), Postives = 833/1076 (77.42%), Query Frame = 1
Query: 193 STFEEDLALMEAISEESQSQKTDSQRTDSQDSQLGTLIRNPAEMNNRWTRPALPEIDTTKDAIIFQQTEVDFYTG--KPLPGMPGLSTGPSPIVRFYGVTMEGNSVLCHVHGFLPYFYVLAPKNFKIEHCETFRSDLNKVVLSDMRSNKDNITTAVVAVELENKESIYGYHRNTKLPYLRITVALQKLIAPSRRLLERGFECTGYPNKCYNTYESNIDFEVRFMVDTNTVGCNWIELPPNAYNIRNFSSNPSKISRCQLEVDIAYDKFISHQPEGEWDKIAPVRILSFDIECAGRKGIFPEAEKDPIIQIANMVIRQGDKDPFIRNIFTLDTCAPIVGSDVHSYKKEADLLQAWSDFVNQVDADIITGYNIVNFDLPYLLNRATTLKIKRFPFLGRILNEKSTISTTTFQSRAYGKRENKVINIAGTVQFDLLHALLRDYKLRSYTLNSVSYHFLKEQKEDVQHSIITDLQNGNSQTRRRLAVYCMKDAILPLRLLEKLMCIINYMEMARVTGVPLSYLLSRGQQIKVVSQLLRKTKLQDLILPAQKIEAGDEYEGATVIDPIKGYYKMPIATLDFASLYPSIMMAHNLCYTSLLTREAAKEMG--QDEYIITPCGHYFVKSNLRKGLLPEILEHLLSARKKAKADLKKETDPFKKKVLDGRQLALKISANSVYGFTGAQVGKLPCLEISSSVTAFGRQMIERTKQLVEDKYNIKNGFKYDSKVIYGDTDSVMVRFGTDSLEESMSLGQEAAAYVSGHFVKPIKLEFEKVYFPYLLISKKRYAGLYY-TRTETYDKMDCKGIETVRRDNAPLVAKLINTCLQKLLIDKDPDGAILYTKQVISDLLCNRIDISELVITKELTKTEDEYGAKQAHSVLAEKMKKRDAGSAPKLGDRVPYVIVAGVKGSKAYEKAEDPIYVLENNIPIDTNHYLEHQLMNPLLRIFEPILGENKTQNALFKGEHTRVKTVVTAKVGGLAKFTKKTATCLGCKTVIPKELGNSAVCKHCKPKESALFQKEISSLASLEEKFNKLWTQCQRCQGSFHEDVLCTSRDCSIFYMRKKAQKDLTQQDELISRFG 3405
S FEEDLALME + E + Q+ + + S + P+ ++ RW RP P +D + +IFQQ E+D Y G +P+PG P S G P++R +GVT EG SV CH+HGF PYFY AP F EH + +LN + D R ++ AV+AVEL ++ES++GYH + P+LRITVAL +L+AP+RRLLE+G G + YE+N+DFE+RFMVDT+ VGCNW+ELP Y +R K ++CQLE D+ + +SH PEG W +IAP+R+LSFDIECAGRKGIFPE E+DP+IQI ++ +R G+ +PF+R TL CAPI+G+ V SY+KE DLLQAWS F+ +D D+ITGYNI NFDLPYL++RA TLK++ FPFLGR+ S I ++FQS+ G+R+ KV+++ G VQ D+L LLR+YKLRSYTLN+VS+HFL EQKEDVQHSIITDLQNGN QTRRRLAVYC+KDA LPLRLLE+LM ++N +EMARVTGVPLSYLLSRGQQ+KVVSQLLR+ + L++P K E G++Y GATVI+P+KGYY +PIATLDF+SLYPSIMMAHNLCYT+LL A+++G +D++I TP G FVK+++RKGLLP+ILE+LLSARK+AKA+L KETDP +++VLDGRQLALK+SANSVYGFTGAQVGKLPCLEIS SVT FGRQMIE+TKQLVE KY ++NG+ +KV+YGDTDSVM RFG S+ E+M+LG+EAA +VSGHF PI+LEFEKVYFPYLLISKKRYAGL + +R + +D+MDCKG+E VRRDN PLVA L+ L++LLID+DP+GA+ + + VISDLLCNRIDIS+LVITKELT+ +Y KQAH LAE+M+KRD GSAP LGDRVPYVI++ KG AY K+EDP++VLE+++PIDT +YLE QL PLLRIFEPILGE + + L +G+HTR KTV+T KVGGL F K+ C+GC+TV+ + AVC+ C+P+ES L+QKE+S L +LEE+F++LWTQCQRCQGS HEDV+CTSRDC IFYMRKK +KDL Q++L+ RFG
Sbjct: 32 SQFEEDLALMEEMEAEHRLQEQEEEELQSVLEGVADGQVPPSAIDPRWLRPTPPALDPQTEPLIFQQLEIDHYVGPAQPVPGGPPPSRGSVPVLRAFGVTDEGFSVCCHIHGFAPYFYTPAPPGFGPEHMGDLQRELNLAISRDSRGGRELTGPAVLAVELCSRESMFGYHGHGPSPFLRITVALPRLVAPARRLLEQGIRVAGLGTPSFAPYEANVDFEIRFMVDTDIVGCNWLELPAGKYALRL----KEKATQCQLEADVLWSDVVSHPPEGPWQRIAPLRVLSFDIECAGRKGIFPEPERDPVIQICSLGLRWGEPEPFLRLALTLRPCAPILGAKVQSYEKEEDLLQAWSTFIRIMDPDVITGYNIQNFDLPYLISRAQTLKVQTFPFLGRVAGLCSNIRDSSFQSKQTGRRDTKVVSMVGRVQMDMLQVLLREYKLRSYTLNAVSFHFLGEQKEDVQHSIITDLQNGNDQTRRRLAVYCLKDAYLPLRLLERLMVLVNAVEMARVTGVPLSYLLSRGQQVKVVSQLLRQAMHEGLLMPVVKSEGGEDYTGATVIEPLKGYYDVPIATLDFSSLYPSIMMAHNLCYTTLLRPGTAQKLGLTEDQFIRTPTGDEFVKTSVRKGLLPQILENLLSARKRAKAELAKETDPLRRQVLDGRQLALKVSANSVYGFTGAQVGKLPCLEISQSVTGFGRQMIEKTKQLVESKYTVENGYSTSAKVVYGDTDSVMCRFGVSSVAEAMALGREAADWVSGHFPSPIRLEFEKVYFPYLLISKKRYAGLLFSSRPDAHDRMDCKGLEAVRRDNCPLVANLVTASLRRLLIDRDPEGAVAHAQDVISDLLCNRIDISQLVITKELTRAASDYAGKQAHVELAERMRKRDPGSAPSLGDRVPYVIISAAKGVAAYMKSEDPLFVLEHSLPIDTQYYLEQQLAKPLLRIFEPILGEGRAEAVLLRGDHTRCKTVLTGKVGGLLAFAKRRNCCIGCRTVLSHQ---GAVCEFCQPRESELYQKEVSHLNALEERFSRLWTQCQRCQGSLHEDVICTSRDCPIFYMRKKVRKDLEDQEQLLRRFG 1100 The following BLAST results are available for this feature:
BLAST of TCONS_00005756 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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