TCONS_00005837 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005837
Unique NameTCONS_00005837
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2334

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005837 ID=TCONS_00005837|Name=TCONS_00005837|organism=Clytia hemisphaerica|type=transcript|length=2334bp
NAAAAATCAGGGAACCGAATACCTCCATACAAAATCTGGATAAAAAATGG
ggtgttttaaaaagaaaaatcaagacGATGAGGAGAAAACAAGGAGACCT
AGTAATTCACCATTCAAACAACAACAGATGAAAGCATGGCAACCTGTTTT
AACTGCATCAACTGTGTTACCAATCTTTTTTCTAACTGCTGTTGTCTTTC
TACCATTGGGTATAACATTGCTTGTCTCATCGAATGGTATCAGAGAGAAA
ATCATTGAATACACAGACAATGAGGCATGCAGGCAATGCATCACTAAGGA
TGAAGGCATCACAAGTCCAGATCAAAATAAGTTCCTAGCTTGCAAAtgtg
aaattaaattcaaattgaatgaaaaatggGATGGTGACATCTACTTTTAC
TACGGCCTTGACAATTTTTACCAGAATCACAGAAGATATGTACGCTCAAG
AGATGATGCTCAACTTCATGGTAAACTATCTGATAAAGTAAGTCCCAACT
GCGCAGCACCTTTTGACAAAGGTTTGGTTGGCAATTCAACACACAATGAG
ACAAGACCAATTGTACCATGTGGTGCTGTTGCTAACAGCATGTTCACAGA
TGTTTTCACTTTATACCACGCAAGTGATCTAAGCACAACAGTACCCCTGA
CTTCCACAGGAATTTCCTGGAAAAGTGACCGTGAAACAAAATTCAAGAAT
CCATCGCCTATCTCCAAACTTGACACTTTTGCAAAACCAAAAGATTGGAA
TATCCCAATTTCAGCACTCGATAACCAAATGGTCAACGAAGACTTCATTG
TCTGGATGAGAGTTGCAGCCTTTCCTACTTTTCGAAAATTGTACCGAAAA
TTGGATACATCAAGCCAGGTTAACAAAAATTATCAAGATGGTTTAATCAT
TGGAGAATACACATTGAAAATCGACTACAACTACCCTGTGAAGAGCTTTG
GTGGAAAGAAGAAGTTTATCATAACAACAGCCTCATGGATTGGAGGAAAG
AATTCTTTCTTGGGGACTTGTTACACTGTTGTTGGAGCGTTATGCTTGGT
CTTTGgctttgttttcctttttattcACAAAAAACACAACAAGGGTAACT
CAAGATGATGAGTAAAAGTTACCATTGTTGCCAAACCATGAAAATCAAAG
GCAAAGTGAAAGCATCTTGCACAATTTATTCCACTTACTGCAAGAAACAG
TCACTCAAAATTTCCTTCCTTATGTAGCTCGATTATTCTGAATTTATAAA
ACAATTATCTTCAGCTGATATTATAAATAATTGTTTAATGTCATAATTAT
TCAATCTTCCTGTAAATAAGATGAATTTTTATATTTAGAtcatttaattt
ttattcacgacattaaaaattttcattttaattagatattttgTACAGTT
TTCTTTAAGTGTTTGAtacactaaagtctgtctcaatataatcttcaGTG
GATGATAAAATAGGCTGTAatttttgtgcttgttgaaagaAACGAGGGTT
GAATGGAACAACAAAacgatttttctgaaatttcacttttgaatatattt
ttaacgAGCTCAAAACCGCTATCTGATCCgtattctatcaaaagttacag
ccatttttgtctcagctgcaaattatattgagaaaGACTTTATATTGTGT
TTCAtgttttgactatttttttctgacagtcttttttatttcttcgtaAT
TCGCTGTCATCAAGGCAAAAgatccaatctcaaaattagtgtcTGAGGAA
ACTAAGAATCTTTCTGTTTTgctaactttaaattttgagattgacctTTT
TTCATGTAGATGGGATCCCCCTCACTACGAAAAAAGGGCCAAGCTCAAGA
TTTAAGGTTAGCCAAACAGAAAAATACCCAGTTTTCTCAGACACTACTTT
CGAGATTGGACCTTTTGCCTTGTATAATATACGTAAGTCATTTTAAGGGC
TAATcacattttatgaatttttttttttttttcctttattgttaaaagta
ttatttttcaGATTCTGAAGCATTCAAGACGGCTATAAAATATTGAACta
atggccattttaatttgtCAGATCTCATGTCACAAAGCCAGGAAAAATAT
CTTGttattaaaagtaataatttatTTCGTCAGGATTTATATATACAttt
taattttacaatttttcttttcGTGATTGTAAAGGCCcatctttcaagaa
atatattTATGTTCATGTTCCGATTGCATTGTTGTTATGATCTCGAGTCA
ATGAGGTCTTTGTAATAAATTACCTCAATTGGAAGGATGTTCTTATTCGG
ATTGTTTGAAATATACTGTCTGCAGATACCACCT
Run BLAST on NCBI

protein sequence of TCONS_00005837-protein

>TCONS_00005837-protein ID=TCONS_00005837-protein|Name=TCONS_00005837-protein|organism=Clytia hemisphaerica|type=polypeptide|length=353bp
MGCFKKKNQDDEEKTRRPSNSPFKQQQMKAWQPVLTASTVLPIFFLTAVV
FLPLGITLLVSSNGIREKIIEYTDNEACRQCITKDEGITSPDQNKFLACK
CEIKFKLNEKWDGDIYFYYGLDNFYQNHRRYVRSRDDAQLHGKLSDKVSP
NCAAPFDKGLVGNSTHNETRPIVPCGAVANSMFTDVFTLYHASDLSTTVP
LTSTGISWKSDRETKFKNPSPISKLDTFAKPKDWNIPISALDNQMVNEDF
IVWMRVAAFPTFRKLYRKLDTSSQVNKNYQDGLIIGEYTLKIDYNYPVKS
FGGKKKFIITTASWIGGKNSFLGTCYTVVGALCLVFGFVFLFIHKKHNKG
NSR
Run BLAST on NCBI

transcript from alignment at sc0000061:214732..226758+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005837 ID=TCONS_00005837|Name=TCONS_00005837|organism=Clytia hemisphaerica|type=transcript|length=12027bp|location=Sequence derived from alignment at sc0000061:214732..226758+ (Clytia hemisphaerica)
NAAAAATCAGGGAACCGAATACCTCCATACAAAATCTGGATAAAAAATGG
ggtgttttaaaaagaaaaatcaagacGATGAGGAGAAAACAAGGAGACCT
AGTAGTAAGGAAAATATTTACTTCATTGGCTTTTAATCAGGGGAAAGTTT
CCCCGACCGTCCTTCGTTGgttgttttctgatttttttgtagcattttga
aagttttgtatagagtcccctgcccagttggcgaccggtctagttggcga
ccgaacgtctNagagcatgttaaaagttgtctaaccgttggttgaaaagg
attttcaaaaaagtaaaaagtaagtgaaaaatttgaatcaaaaaaatttc
ggtcgccaactgggcagggtactctaaGTCATAGCTACATTATATTAGct
actccagaagatttttcaaattttaattttattcaaagCCTATCCCATCT
TGTAGAGatttgaagaagaaagaaaatgaggggctGTATGCCTCTAGAGG
ATAAGCGGTTGTATGANtgaacccagaaaagtcatgcaaaaacaaacctc
ttgagaatttcttttggtagtaatctgccttgacctatttcccgtactgt
gtaaaaaaaaaGTTCTAGAAAAGAATGAGTAGAATCCaaaagatccaact
ttgcacggaagcacatGAAAAACccagatttttcgaaaaaaataaaaaat
ggctacctgtggacaaaaaagcttcgtaagaaaaaacgcttcaactccca
ctccaaaaaatacttgtccaaaacgatGANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTCAATG
ACGGTAACTTGTTTCAGTCTGTGTATAGAGATATCTATCCAGATGAGCTT
GAACTCAAAATTGAGCACTCTGGTAAtcatgcttcttttttaaacctaGA
TATTACCATCAAAGACgggatatttatttataagttgTTTGATAAACGGG
ATGCATTTCCTTTTTCCATAGTCCGAATGCAGCATAAAGATAGCAACTTG
CCAGAatcgattttttattcttcttttgttgATGAACTTCTCAGGATTGC
TCGTTCTACGTTACTTTTCGAGGACTTGAAAGTTAAAGCCAAAGTTTTTA
TACAAAGAATGCGATGTCAAGGTGCTGAAAACGCNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAAAgtaattgggtcggacatgatgtccgactagaa
tcgatttgggtcagacatttcagcaattgggtcggacaatgtccgatgtc
cgaccgctATTTCGAGCCCTGNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNatcatattttcct
tttctactccaacctgattgattttctgtgaatgttcattctagattttt
gttgtatttgtattgtctttttgttttgtgggtttttctctttattcttt
ccattttgagtagttgaaggttttatacttctagactatatatatttaag
gtaaagaggttgcgagatttgggttagcgaggcaaaaatcgctaaaaagc
tggtaaaatcgtaatcctcaaaaatcaaagttcAAGCCTCACTGCCCTtg
ctcttatcggccaaaatttttgaaaccaacTTTTACATCTTCGCAAACgc
aattttttccaatcatGTCCGCCATCGCGTTGATCTCGCCTTCCCACCCG
TCTTCGGGAAGGAAATGGCACCAcgctggccaatgaaaaaagagtttttt
tatcaaagctaattcaaaactgtacttttaaagttgCGAATTTGTGCTCG
AAGGTGAGAGCAAGTGAAATTGtatgctttcagtggagtttgtggacaaa
atcagaaagaaattggctggAAAGATTTTCGTCCCAATACGTGtttttta
tcggtatgtagttggaccccccacccccttatcggcccaatgccgataaa
aaattcgaaagttttttgtcgaggGTCCCTAACAGGGGTAACATGATTtc
tgagggcaaaagtttttagcaaaaatcgaaatttccaaggcgagagaaaa
aaatgtatgaatttccaaggcaatggAAGTGAAAAAGGCAATTAAAAGAG
TGGAGTTTCTGATGccttttgcaaaagtacatggagtTCATCGGAACTTc
caaccaccactggaaaagaaaaattatttctgaggctagaaaaaatttaa
aaatgcacgtcgtctgACGGGGagtaacaaaaattttatgGGATGGCCCA
TTGGCAGCTTGGGAAATACGTGTTTCCATTATTTCAAGAAATGAGGTGCA
TTGATGATGCAAGAAGTAATCAACAAAAGGAACcaataaaagatcaaaga
aaaaaaCTACAGTAAGTGGGGAAAAATGATTGCTCATACCAAGCTTGGAG
ATTTGGCAAACCCAAAGTAACGTTGGCAGGCTTCATGAGTTTTCCTGTGG
TATATAATATGAAGGCTGCCTAGATTGGCGAAaacatgaagaaaaagaag
aaaaactaaaattcaCCTTTCAACCCTTAGAATCAACATTTGATACAAAT
AAAGTTATATGACTAGTTGTTATCCAAGGTCCCAAAAAGCCATTAGTGCC
AAAAATTTAGGCCATTTGTTTTAACCTTCATCATATATggcaatctcatt
ggttgaaatttaaaaaagactttccaATGGAGCAAATTACAGAAGCAACT
GagaagaagagaccactttttttgcagatttcaatataaaaataGCATGG
GGAATACTTCTGTCGATGTGTATTATGTGTCAACTATGTTAAGCATTTTA
TTCTCGACTtgagttgagctagaatctgagaatgtctgtctgtctgtcta
tgtcccaaaactttgaggcagcctggagacttcaaaaattgttggacaCT
AAAATTTAGCACACttttccttgggtgaatatctggagcgttttttttca
tttttcaaaaattttgatttttggggcctggggactagtttttcgccaaa
acgaggctaaaactttggggcagcttggaaacgttaaaaattgtcggatt
tggctgaaatttggcactcTTTTTCCTTGGGCCAATATCTGGGagtgctt
ttttcatttttcaaaaattttgatatttgaggCCTGGTTACAAGTTTCTC
GCCAAAATggctaaaactttggagcagcctacaggcctcaaaaatggtcg
gatatggctgaaatttggcaaacTTGTTCGTTGGTTGAATATCTAGGGGG
TCTACAATTCGCCCtatgaatgatttgaagccactgaagttgagtcCAGT
GTGTTGAGCACATTCGACTATTGTTGAAATAGAAAAGAGGTAAGTCTAGC
CTAGCCTAATTGTAAGCtgtctggggggggggggggggggatgaaTGAAT
CAGTCATGGTTGACAAGTGACTCAAGTACCTGCTGCAGAGGAATAGTGGT
acctgagttttaacactacgCAGGTCTAAATAAATAGGCCAAAATAGGAA
ATGTCTCAATCATTCAGCTGACAGAAAATGACTGGTCAAGATTTCCTTTA
TTCTTTTGTAGGAATCTTTAATAACCTTTAACAATCTTAATCTTGGCAGT
GGTGTTTAAACTTAAGTACATGATAGGGAGGATAAAACTAATAGTCTAAA
TCTCATCCAACTCATTATatgttagtcacactagcgaaTCCAGGTGTCAG
AACTGGTCAGAAGtgcaatttttatattttttgacaaGAGCTGTTAAGTC
ATTCTATTGCACCCCAGTAAGTGGCAGTTAGAGAGATAATGACTTTGATC
TAAAAATAGTTTTCCTTTCTCATCTCAGCAAGAACTTATAGAGGCTGAAA
TTTAACTTTATTTGTTTGTCTCCCCCATTGAGGCCGACCCTAAAAAATCT
TTCGTTTCCGGTCCActgggtgacgaaaaaaaagtcATGCAGGCGgccgg
gaaaaatttttttttggtccttttcatgatttctaatatttaataaaaaa
attaggaagaaaaaaatcatctctTTGCTCTGGCTGTTAGTGTTGCCCCA
CATTctgtctttatattttttctttcttctttctttcactgaaagaaatg
tgttgttattaattacaaaaagctgtattttgtgattttttttctctaag
aATCAACTAACTTTTCATTCTAATAAATTGATTTAATATGCataacacta
tttatttgatctttaacgTCCAGAAAGCATgctaaataaacaaacttttt
gaagagtgTTTATATAGGAATGATGTAACAGTTTGAATGAGTCATGAGTA
aaggtttttataaagaaagtttCATCTGTTATCTATttggtccttataaa
aaaaaaattcggccaggtgaaaaaaaaatttcacccgGCCAGTGGACcgt
aaacaaaattttttttggggtCGGCCTGAGGTATGCATCCCCGAGATCTA
AACTGATGTGGACACTGACCAAGGGATGTCAGTTAATTGGTTATGGAATC
ACAAAATATATTGTTATTTATCACTTGGTTGAGACTAACtcaagaaaatt
aaattaaaatcgAGTGAGACCACCAGTAAATTTACTAAAGATTTTTAGTT
TCCCTGTGTTCaagctttctttcttttgactAAGCAAAAAGCCTTCTAAG
GTAAATATGTGATTCTGTGCATGGAACCTAAATGAAACAACTTATATGCT
TTGATGTGCTAGAAGTGTTAAAtcctttatttattttcaagcCTTCACTA
TAATAAAACGTTTTGAATTTGTAGATTCACCATTCAAACAACAACAGATG
AAAGCATGGCAACCTGTTTTAACTGCATCAACTGTGTTACCAATCTTTTT
TCTAACTGCTGTTGTCTTTCTACCATTGGGTATAACATTGCTTGTCTCAT
CGAATGGTGTAAGtcaacaaaaattttaagttgTATGTTCATTGTTACCA
TAACTTGAGTTCACCTCACATTTGCGTTAGAAGAAACAGATTGCAATGTG
GGCAGAACTGACCACTAGATCTGAGATAACAATAACAGaaataaaaatag
caaaaaactcAATTAGATTTTCATACACTGGTCATGAAATGCCAGCCAAA
TAATtatattcactaaaatatttgttattaTTATCTGTCTGATTCAATTC
AGACGAGgttcttttcatcaaaattgttttgtttttttgttttttcttca
atttttaattcATCACGTTTTACAAtataaagaaactttttgtCAGTGca
cagaaaaaaagacaaagtcAAAAGGACATGCAGAAAGATTGAGCTGattg
ttttttctcttttgattTACTGTACATGCAACTAAAAATCTACACATTTG
CTTTCAGATCAGAGAGAAAATCATTGAATACACAGACAATGAGGCATGCA
GGCAATGCATCACTAAGGATGAAGGCATCACAAGTCCAGATCAAAATAAG
TTCCTAGCTTGCAAAtgtgaaattaaattcaaattgaatgaaaaatggGA
TGGTGACATCTACTTTTACTACGGCCTTGACAATTTTTACCAGGtaatat
tttgacaaaacttTAACAATGCAATCATAAGAAAAGCTTTACAATCAGTA
CAATTTCTTATTGTTTACGGCTATAACACTATAACACATTGATTGATTTG
AATCAAAATAGCTTTAATTATTGTGAATCAATTTCATTCTAAAGTTTGAG
AATTATGGTATTTGATTGTGAAAAGCAACAGCtttctttgttgattttta
tctaTCTATCGGCTGTTAGTGTTAAGTACCATTAAGTGCGTGGATTTTTT
AACTGTTGAGGTTGTCAAAGTTCTTATTCATAATGAATGAAGAGAAATTT
ATTCAACCATTTAGAATCACAGAAGATATGTACGCTCAAGAGATGATGCT
CAACTTCATGGTAAACTATCTGATAAAGTAAGTCCCAACTGCGCAGCACC
TTTTGACAAAGGTTTGGTTGGCAATTCAACACACAATGAGACAAGACCAA
TTGTACCATGTGGTGCTGTTGCTAACAGCATGTTCACAGGTAAAAGTGAA
CATTTCAACATATTTTACTCCTAGATCATCACTGATCTTTTTTCCTTTCT
CAATATTCGACTTTTAAACTCcatctttttttaatatttatcgGATTATT
ATTACATTGAACTGTTCTGTaaattgacaatttattttattagtCGGAAC
AACTTCCATCTTTTGACTTGCTGCTGTAGAAAAAGCTATGAGTTCATTGC
ATTTTATCAGATAGACTTTAATTTATGTACCTTTCTTTTCATAGATGTTT
TCACTTTATACCACGCAAGTGATCTAAGCACAACAGTACCCCTGACTTCC
ACAGGAATTTCCTGGAAAAGTGACCGTGAAACAAAATTCAAGAATCCATC
GCCTATCTCCAAACTTGACACTTTTGCAAAACCAAAAGATTGGAATATCC
CAATTTCAGCACTCGATAACCAAATGGTCAACGAAGACTTCATTGTCTGG
ATGAGAGTTGCAGCCTTTCCTACTTTTCGAAAATTGTACCGAAAATTGGA
TACATCAAGCCAGGTTAACAAAAATTATCAAGATGGTTTAATCATTGGAG
AATACACATTGAAAATCGACTACAGTTAGTATTTTTTATAtgggaaataa
tttttcagataatttcaATATGATTCACACATCTGATGTCAATTAAATTA
AAGACATTTTGTCTTCCATCTCATCTCATAACATCAGTTCCAGTTCAAAG
GTTTTCCCTTCCTAACCCTACATTTTATgaagattctttttttttaagtg
tgAAAATCTGAATTTAAACTAAGCAATAAGGAGTTTTTggtataaacaaa
aaaaaaagtaagttCACTAAAAAAAGTGTTGATATACTAAAAGTTAATAA
TTTCCTCTAAAACAATAATTCTACTATTCTACTATTATAGACTACCCTGT
GAAGAGCTTTGGTGGAAAGAAGAAGTTTATCATAACAACAGCCTCATGGA
TTGGAGGAAAGAATTCTTTCTTGGGGACTTGTTACACTGTTGTTGGAGCG
TTATGCTTGGTCTTTGgctttgttttcctttttattcACAAAAAACACAA
CAAGTAAGTTAGTaactcttatttttttgaaaaaataacgtgTTTGTCGT
ATGTTTCCCAATGCACTGGATGcaccatgaaaaaaattaacattttgaat
aaaatttcctCAAGTTCAATGAGTTGTAACaaagttaatatttttgtatt
aCAAAGAAGGATAAAAAGTGCTCTATAACCAGAACATTTATTTTTCAACA
AGTAAGAAAATGTTTTACTGTCAGTTCCAcccaaaggattttcaaatgta
aaatgATTTACTTTTactatgaaaaaagtttctcaatAAAAACATAGAAT
CCTTTTGGGAGTATACAAAAAGTACATAGTATTGGtattagaaagaaaaa
agataaattaaatttttggtgGATAGTGTATATCGAATTTGGGAAAGTGG
ATCCAAAATTATGTTCAAAATAATATAAAGTTTAAATATTCATGAGTGCT
TTAAATCATTTATTTCGTGCAAAGAAATGACAAATGATGATTTATCAGAG
CTTTTGCAGGAGACTGCAAGAGTGATTAGATTTTACGCAATTAATCGCAT
AAAATCTGAAGCAAACATCTTCATGGTGTCAGCCttggtttaggtcccag
gcaaaaaattaggtcccccgtgagttttaagtccccctaaagattcatga
aatttttggtAGCCCTAAGGGCTTTCAGCTTCACGAGCTTTAATTTGAGT
AATATAAGCCAACCATTAAGATGAAGTATTCAGTATTTAGCAACCATGTT
AAATGATGAGATTTCAGCTCCCCCAAGTTCATTAGATCccccaaatattt
gaaacatcttTAGCCCCCACCTTTTTTGGGCTTTTTGGAGGCTGTAACCC
CCCCCCAAACTATtaggggggctgacgctatggaATCTCAGGAGGAATAA
AGTCCACTATCAAAGTCTAGAAttaaaaaacctaaaatttgatgaatgaa
aaatcCAAAAGCCTAATCTTTTTTCTCTGATGCAAAAGAAGTCATTCTTC
TGATGTTTGTAGAACTTAggagaaaattgaatttaaattaaaagtgttaa
aaaacttCTTCATGGTACATgctgtatttttttaatttttccacaTCAAC
ATCCACCATAGATTTTAGTTTGTATGCTTTCTTCATCCTTATAATTCATA
ATGAAAATTAATAATTGTATGGTAATGTGCGCCACCTCTGAAAACCATCT
TCATTTTACCACATCATAAGTCAATTTTGATTTCCAATAATATTCTGTCT
ACTCAGGACTTAGTAAGCTTTTCTCATCTCTTCAAACTTGATCATTTTTA
GGGGTAACTCAAGATGATGAGTAAAAGTTACCATTGTTGCCAAACCATGA
AAATCAAAGGCAAAGTGAAAGCATCTTGCACAATTTATTCCACTTGTATG
TAGTAAGAAATGAATTGAATTTGTATGGAATAGGTTTTGGATGGCACCAA
CTTTACTTGATGTATATTATTTTACCATGCCTTTTTCCGACCGACTCCAG
TCTTCAAACAATATCAAAGGCCtataattatataaaaaatacacCAGATT
TACATTAACAGTTTAACCAATAGCACAGCACAGCACCTTGTTGatatttt
gaagaaagaaaaattaaaatttctataTTTTCATTCTATAAGCTTTTCAT
ACCtctaaaattttgcagaaatgAATCTGAAAAGTGAGatagaaaaactt
gaaaattaacTCTCTTTTTTAACTTTAAGACTGCAAGAAACAGTCACTCA
AAATTTCCTTCCTTATGTAGCTCGATTATTCTGAATTTATAAAACAATTA
TCTTCAGCTGATATTATAAATAATTGTTTAATGTCATAATTATTCAATCT
TCCTGTAAATAAGATGAATTTTTATATTTAGAtcatttaatttttattca
cgacattaaaaattttcattttaattagatattttgTACAGTTTTCTTTA
AGTGTTTGAtacactaaagtctgtctcaatataatcttcaGTGGATGATA
AAATAGGCTGTAatttttgtgcttgttgaaagaAACGAGGGTTGAATGGA
ACAACAAAacgatttttctgaaatttcacttttgaatatatttttaacgA
GCTCAAAACCGCTATCTGATCCgtattctatcaaaagttacagccatttt
tgtctcagctgcaaattatattgagaaaGACTTTATATTGTGTTTCAtgt
tttgactatttttttctgacagtcttttttatttcttcgtaATTCGCTGT
CATCAAGGCAAAAgatccaatctcaaaattagtgtcTGAGGAAACTAAGA
ATCTTTCTGTTTTgctaactttaaattttgagattgacctTTTTTCATGT
AGATGGGATCCCCCTCACTACGAAAAAAGGGCCAAGCTCAAGATTTAAGG
TTAGCCAAACAGAAAAATACCCAGTTTTCTCAGACACTACTTTCGAGATT
GGACCTTTTGCCTTGTATAATATACGTAAGTCATTTTAAGGGCTAATcac
attttatgaatttttttttttttttcctttattgttaaaagtattatttt
tcaGATTCTGAAGCATTCAAGACGGCTATAAAATATTGAACtaatggcca
ttttaatttgtCAGATCTCATGTCACAAAGCCAGGAAAAATATCTTGtta
ttaaaagtaataatttatTTCGTCAGGATTTATATATACAttttaatttt
acaatttttcttttcGTGATTGTAAAGGCCcatctttcaagaaatatatt
TATGTTCATGTTCCGATTGCATTGTTGTTATGATCTCGAGTCAATGAGGT
CTTTGTAATAAATTACCTCAATTGGAAGGATGTTCTTATTCGGATTGTTT
GAAATATACTGTCTGCAGATACCACCT

Coding sequence (CDS) from alignment at sc0000061:214732..226758+

>TCONS_00005837 ID=TCONS_00005837|Name=TCONS_00005837|organism=Clytia hemisphaerica|type=CDS|length=1062bp|location=Sequence derived from alignment at sc0000061:214732..226758+ (Clytia hemisphaerica)
ATGGggtgttttaaaaagaaaaatcaagacGATGAGGAGAAAACAAGGAG
ACCTAGTAATTCACCATTCAAACAACAACAGATGAAAGCATGGCAACCTG
TTTTAACTGCATCAACTGTGTTACCAATCTTTTTTCTAACTGCTGTTGTC
TTTCTACCATTGGGTATAACATTGCTTGTCTCATCGAATGGTATCAGAGA
GAAAATCATTGAATACACAGACAATGAGGCATGCAGGCAATGCATCACTA
AGGATGAAGGCATCACAAGTCCAGATCAAAATAAGTTCCTAGCTTGCAAA
tgtgaaattaaattcaaattgaatgaaaaatggGATGGTGACATCTACTT
TTACTACGGCCTTGACAATTTTTACCAGAATCACAGAAGATATGTACGCT
CAAGAGATGATGCTCAACTTCATGGTAAACTATCTGATAAAGTAAGTCCC
AACTGCGCAGCACCTTTTGACAAAGGTTTGGTTGGCAATTCAACACACAA
TGAGACAAGACCAATTGTACCATGTGGTGCTGTTGCTAACAGCATGTTCA
CAGATGTTTTCACTTTATACCACGCAAGTGATCTAAGCACAACAGTACCC
CTGACTTCCACAGGAATTTCCTGGAAAAGTGACCGTGAAACAAAATTCAA
GAATCCATCGCCTATCTCCAAACTTGACACTTTTGCAAAACCAAAAGATT
GGAATATCCCAATTTCAGCACTCGATAACCAAATGGTCAACGAAGACTTC
ATTGTCTGGATGAGAGTTGCAGCCTTTCCTACTTTTCGAAAATTGTACCG
AAAATTGGATACATCAAGCCAGGTTAACAAAAATTATCAAGATGGTTTAA
TCATTGGAGAATACACATTGAAAATCGACTACAACTACCCTGTGAAGAGC
TTTGGTGGAAAGAAGAAGTTTATCATAACAACAGCCTCATGGATTGGAGG
AAAGAATTCTTTCTTGGGGACTTGTTACACTGTTGTTGGAGCGTTATGCT
TGGTCTTTGgctttgttttcctttttattcACAAAAAACACAACAAGGGT
AACTCAAGATGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003330XLOC_003330Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005837-proteinTCONS_00005837-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005837-exon-sc0000061-1491911889:214732..214835TCONS_00005837-exon-sc0000061-1491911889:214732..214835Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:214732..214835TCONS_00005837-exon-sc0000061-1510915933:214732..214835Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:214732..214835TCONS_00005837-exon-sc0000061-1575043694:214732..214835Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:221556..221689TCONS_00005837-exon-sc0000061-1491911889:221556..221689Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:221556..221689TCONS_00005837-exon-sc0000061-1510915933:221556..221689Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:221556..221689TCONS_00005837-exon-sc0000061-1575043694:221556..221689Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:222139..222324TCONS_00005837-exon-sc0000061-1491911889:222139..222324Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:222139..222324TCONS_00005837-exon-sc0000061-1510915933:222139..222324Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:222139..222324TCONS_00005837-exon-sc0000061-1575043694:222139..222324Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:222646..222820TCONS_00005837-exon-sc0000061-1491911889:222646..222820Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:222646..222820TCONS_00005837-exon-sc0000061-1510915933:222646..222820Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:222646..222820TCONS_00005837-exon-sc0000061-1575043694:222646..222820Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:223076..223405TCONS_00005837-exon-sc0000061-1491911889:223076..223405Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:223076..223405TCONS_00005837-exon-sc0000061-1510915933:223076..223405Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:223076..223405TCONS_00005837-exon-sc0000061-1575043694:223076..223405Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:223722..223884TCONS_00005837-exon-sc0000061-1491911889:223722..223884Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:223722..223884TCONS_00005837-exon-sc0000061-1510915933:223722..223884Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:223722..223884TCONS_00005837-exon-sc0000061-1575043694:223722..223884Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:225183..225276TCONS_00005837-exon-sc0000061-1491911889:225183..225276Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:225183..225276TCONS_00005837-exon-sc0000061-1510915933:225183..225276Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:225183..225276TCONS_00005837-exon-sc0000061-1575043694:225183..225276Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1491911889:225611..226758TCONS_00005837-exon-sc0000061-1491911889:225611..226758Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1510915933:225611..226758TCONS_00005837-exon-sc0000061-1510915933:225611..226758Clytia hemisphaericaexon
TCONS_00005837-exon-sc0000061-1575043694:225611..226758TCONS_00005837-exon-sc0000061-1575043694:225611..226758Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:214732..226758 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.64986	2.08427	3.04894	2.65852	0.547945	1.36037	0	0	22.0869	25.6741	15.1259	16.219	26.8092	25.6636	16.3786	16.6413	20.7288	23.1691	19.7517	26.6253	10.0546	13.8685	6.7612	5.87715	0.882721	0	14.888	9.62358	9.01995	13.046
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR005045CDC50/LEM3_fam
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
cellular_component GO:0016020 membrane
Blast
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BLAST of TCONS_00005837 vs. Swiss-Prot (Human)
Match: CC50B (Cell cycle control protein 50B OS=Homo sapiens GN=TMEM30B PE=1 SV=1)

HSP 1 Score: 274.633 bits (701), Expect = 3.701e-84
Identity = 146/352 (41.48%), Postives = 196/352 (55.68%), Query Frame = 2 
Query:   83 EKTRRPSNSPFKQQQMKAWQPVLTASTVLPIFFLTAVVFLPLGITLLVSSNGIREKIIEYTDNEA---CRQCITKDEGITSPDQNKFLACKCEIKFKLNEKWDGDIYFYYGLDNFYQNHRRYVRSRDDAQLHGKLSDKVSP-NCAAPFDKGLVGNSTHNETRPIVPCGAVANSMFTDVFTLYHASDLS---TTVPLTSTGISWKSDRETKFKNPSPIS-----KLDTFAKPKDWNIPISAL-----DNQMVNEDFIVWMRVAAFPTFRKLYRKLDTSSQVNKNYQDGLIIGEYTLKIDYNYPVKSFGGKKKFIITTASWIGGKNSFLGTCYTVVGALCLVFGFVFLFIHKKH 1087
                +P N+ F QQ++ AWQP+L+AS  LP+FF   + F+ LG+ L  SSNGI+E   +YT +     C  C    +G   P       C C   F L E + G +Y YY L NFYQN+RRY  SRDDAQL G  S    P N  AP+ +   G        PI PCGA+ANS+F D F+L+H          VPL  +GI+W +D   KF+NP  ++          A P +W  P+  L     +   +N+DF+VWMR AA PTFRKLY ++        NY  GL  G Y + I YNYPV++FGG K  I ++ SW+GGKN FLG  Y VVG+LC++ GFV L ++ ++
Sbjct:    8 RGAHQPDNTAFTQQRLPAWQPLLSASIALPLFFCAGLAFIGLGLGLYYSSNGIKELEYDYTGDPGTGNCSVCAAAGQGRALPP-----PCSCAWYFSLPELFQGPVYLYYELTNFYQNNRRYGVSRDDAQLSGLPSALRHPVNECAPYQRSAAG-------LPIAPCGAIANSLFNDSFSLWHQRQPGGPYVEVPLDRSGIAWWTDYHVKFRNPPLVNGSLALAFQGTAPPPNWRRPVYELSPDPNNTGFINQDFVVWMRTAALPTFRKLYARIRQG-----NYSAGLPRGAYRVNITYNYPVRAFGGHKLLIFSSISWMGGKNPFLGIAYLVVGSLCILTGFVMLVVYIRY 342
The following BLAST results are available for this feature:
BLAST of TCONS_00005837 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CC50B3.701e-8441.48Cell cycle control protein 50B OS=Homo sapiens GN=... [more]
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