TCONS_00005853 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005853
Unique NameTCONS_00005853
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4452

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005853 ID=TCONS_00005853|Name=TCONS_00005853|organism=Clytia hemisphaerica|type=transcript|length=4452bp
GTTCGAAAATTCTACTAataaatggtttgtttttaaaacattctttttcc
atgaagaacttaaattttgattgatgTATAATGGACAATACAATCTGACG
GATAATTAGATATTAATGATGGGTTTCTATAGAGgatttttggttttatt
tttgatgtgtCTCATTCTCAAAGAGGCTGTATGTAtgaaaaataatcatc
agcATGAAAAAGGAAACACCAAACAAGACCCCACAAAAGAGCAGGACTTG
AGTGAACTCAAAGAACTTCATCAACTGGTCGAGAAGTTTGCTCAAAACCA
AGCCATAAGAGGAAACAAGCGTACTTCAACACCAAGAACAGCTTTGGTAA
CTTCCCCTGTAGTCCATAATGGCAAGACACCATTATCAAGCAGCAAGACT
GTAATGGCAACTGTTCCAAAGAAGAGAACCACAAGTGGGGTAGTAAACAC
TATCGAGAGGCTACAGAATGCTATTGGTGTGGATGCAGTAGGTGGTGAAG
AGGACCAACCTACCATAATGTTAGAGGCTGCCTCCTCTGGATCAGGGGAT
GAAGACGGTGGAATGGAGGAGATATCAGGATCAGGGAGTGGTAGTGGTGC
CTCTAAGGAGGACGCCGAATGGGTACCAGTCATCTTGGACGAGGGAAGCA
ACCCCAGGGGAGCAGTGACCAAAAATAAGGCAGTTCAAAGAAACGTAAAG
CAAGTGCAGAAAGCAACCCAAAAGAAAACACCGGCAACGCAAAAATCAAA
TCAGAAAGTACGGTACGAACAAAAAATTGCATTAACGAATACCAAAATGT
CATCACCACAAATCAAAACGCAAACTATGAACTACGCTAATATCCACTAC
CAACAACAGAGACTTCAGACCAATCCTTTAAACGCATATCAGAACTACTG
GCCCCAATACAACCAAAATAAAGGGAGTGTAAAAACTGCAACACCAAAAG
GGAGTGGAATAACTGCTATACGAAACCAAATGAGGCTCAATGTAAATTAC
GTAGCACCCAAAGCTCAGAGTGCAAGTCAAGTTCAACCACAAAATTCAGT
TGGTGCTATTCAATCAGCAATGATTCAACCAGCTCAACCAAAAATTTCAG
CCCCGACCAAAGTTTTAACCGTCCGCAAGGAGACCTCCaagaataaaatc
aaagaaaccAAATtgtcaaaaactgctgacggtGCAGAAGATACTGATGA
GGATGATGATGAACAGAAAACGATTGATCTTCTCTTCGATATACAGGAAG
AAAATCATGCtggtcaaaagaagaaaaagaatcaCAACAAAAAGAAGAGT
CACAAGAAGAACAAGAACGCAAAAGGGAAGAAGAataaaacacaacaaaa
atcgtctgtcaaagaaaataaaaatgtcccTGAGCAACCCGTATCCGAAG
TATTGATGTTTTCAGGGAAAAATGATTTATCTACCAAGAATGTGGACCCT
TTGGTCATCAAAGAAGCGTTGAATATATTCACCAAGAATTCTGCCAAGAA
ACACGAGGAAGGTGCTAAAACTAACAACACATCCAACGTTGTTTTATCCA
TACCagaaaaacacgtcaaaaatctAACAGAACAGAATACAGACTCAGGG
AAAACAATCATTTTAGCTGTTCCAGTGAAACTAACAGATAAAGATATGTT
GGAGCAACAAGTTAATGCTATTAAGGAGAAACTATTAGCTCTTGGTGAAG
AATCAGGTAAAACAAACACCACATCCCTGACACTCAAAAATGATAGGGAA
AGTGGGCCAAGACTGAACGAAAAAGAACCGTCTATACCTCACTTGAATGA
AAAAGAGATGGCCGGGCCACACCTAAACGAGAAGGATGCATCACTGCAGC
ATAGCAAGGAAGGAGGATCTGTAGGTCCACGCCTTAATGAGAAAGAGCCA
TCAGGAGCAGTAAAAGAAACAACAAAAGATAGCAATGAAGTCAAACATCT
TTCAACAACAAATGTAGATAGTGGAAAAGATGAAAATACGAAAGGTTCAG
GATCACATATAGATGGATCTAAAGAATCAAACGATGCGAAACAATCACCT
CAATTCACGTTCCCGGTACCTTCACCAGTCGAGAAACATCTGAATGAAAT
CACTGAGAATCCAATATCTTCGGTGAATACAGCTCAACCGGTTCTTGATG
AACTTAAAGAGACTGGTGCTGAAATTGCTGGTGAAGACGGCCGCGAAAAA
CAAAGTAAAGGATTTTTGGAAGCCATTGCTAAATTGAAGAATAAAGAGCA
ACAAAAGGTTGCATCGACCAATCAGGAACAAGATGGTGATGATGACGTCG
CAAACAACCAACCACAAACTGTTCCATCCAATACAGCTCTTTCTACTGAA
GTTGAAGATAACTCAGATGAAAGTAAAATCATACCAACTGAAAGCCAAAC
AAGTGAAGCTTCCAAAAACAATGATGAAGAAGATGATGAGTCACTTAGTA
GTGCTTCCTCTAGTCAAGGATTATCGAATAAGAACGTGGCAACAACTGGT
TACCAGAAACCAGCTAACATCAAACCTCCTCTCCAGACCAATACTAATGC
GAGACAAGGAGCTAAAGCAGCAGTTGGGACTTTGTCTCAGGAGGATGCTG
ACGAGGATACAGAAGAGGAGGAAGGGGATGAAGATGCACAACTGAAGGGT
AACAGATACCTTCTTCCAGGGAAGCAGGCTAGTGGGCACCGAGCTTCCTC
CTCACTGTTCAAGGGTAAAGAATACAAGCCTTCTCATATACCAGTGACCT
TTCATAAGCATCTCAGTGGATCCTCGCATTTTAAGAGTGGAGATTTCAAG
CCGTCTTACATACCAATGACTTACCACAAACATGGTGGTTCAACTTCAAA
ATTTAAGGGAGGTGATTATAAGCCTTCGAGGATACCGAtgacttttaaaa
acattagaCATGACTCAAAACCGAAAGACAATCATTTGATTGATGACGAT
GGATGTCGCGTGAGCTGCAAACGTGTTTGTACACCAAGCTGTCGTTTCGA
ATGCTGTAAAGGTGGGGATAAGAAAACGAATGCAAAGAATGTTGGCAAAG
GTTTACACAGCCAGAAATTCAATACAAGGAATGTGGGTAAACATTTACac
aagaagaaaatgaaagattCAAAAATTGAAGATAAAGTGAAATCGATTAA
CCAAAAAATCAGTAAATTGTTGAAAAAACCAGCATCAAAAGCTCTGGCGT
TTAAAGATTTGCCAAGCTTACCAAAGCTGAGAAAGAAGATcaattatgat
tctaaaaaaggacaaaagtttttaaaagaaacacAAAAGAAATTAGAATC
ATTGATTTCTTTGTTATCAAAATCTTCAGATGAATTGAATTATGGACCGA
GAACTTCGGCAAGTAAAAAGACATTAAGTTGTGATGCAGAATGTAAAGTA
ATGTGTTTACCAAGCTGTAAGTTTGAATGCTGTAAACAATAGCTGGAACC
TTGTAACTTATAGTATGAATGAAGATAGGTTTGTGACATAAATACATGAA
ACTTAAACATAAACTTAAGTTTAAGGCAAGATGTATACATGCAAAGTGTA
AAGTAATGTCTTTGCCAGTTCggatacaaattttacaaacaTTAACTGGA
ATGTGTTAAGCAAAGTGAATATTCGAATATTGCAAAACATAGCTGGAACC
TTGTGAGGACAATGTGTTAAGCAAGTTACACATTCGAAAATTACAGACAA
TAATTCAAACCCTGCTGTTTGAATTATAGAGACCAAAATGTAACTGCTTT
TTGATGAGGGCATGATACGAAATTATAATACAATGATAAAGCTATTATAT
TGGTAAATTGGAATAGTCTATTAACTGATAATTGGTACCTAGTTTCAAAT
TAGAATATCCATCTGTGGCTAAACACACAGTTATGAGAAATCTCATATTT
CATAGAGATACAGGACGTGCACAATGAGCTATAATCGCCAATATGTGACT
GTAATTGAGTGAGCTCAGAGCAAGTTGGGCATTAGGGCAAAGACAATAAT
CTTCAATGAAGAGATTTGAGAAACATTTTACATTAAAGCTGGCATATAAC
AAGAACTTGAGAGATTGGATTTTAATGAGACAGcaataaaatttgattaa
atgTAAAGATATATTTTCCAGGTTATCATGATAAAAgacaaaaattgtaa
atatttttatgtgACAGAATATAATATAATACAGCAATGATAAAGCAATA
ATTATTTTTATGTACAAAAGATaagattgatttgaaaatatagtaaaacg
AAGTTACGGTAACCGAAATGGGGATATCAAAAACAGTAAAAGTCTTTTAA
GACAGCCTCTGAAAGGTCTCagagattttcttttttgttagaAACTCTTG
Tcattaaaactttgaaaattttttgaaccgaaagtttttaaataatatgt
gAGATATATTGATATAACCGCTCGAGTTTCGTGATgcgattctatttatt
tc
Run BLAST on NCBI

protein sequence of TCONS_00005853-protein

>TCONS_00005853-protein ID=TCONS_00005853-protein|Name=TCONS_00005853-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1108bp
MMGFYRGFLVLFLMCLILKEAVCMKNNHQHEKGNTKQDPTKEQDLSELKE
LHQLVEKFAQNQAIRGNKRTSTPRTALVTSPVVHNGKTPLSSSKTVMATV
PKKRTTSGVVNTIERLQNAIGVDAVGGEEDQPTIMLEAASSGSGDEDGGM
EEISGSGSGSGASKEDAEWVPVILDEGSNPRGAVTKNKAVQRNVKQVQKA
TQKKTPATQKSNQKVRYEQKIALTNTKMSSPQIKTQTMNYANIHYQQQRL
QTNPLNAYQNYWPQYNQNKGSVKTATPKGSGITAIRNQMRLNVNYVAPKA
QSASQVQPQNSVGAIQSAMIQPAQPKISAPTKVLTVRKETSKNKIKETKL
SKTADGAEDTDEDDDEQKTIDLLFDIQEENHAGQKKKKNHNKKKSHKKNK
NAKGKKNKTQQKSSVKENKNVPEQPVSEVLMFSGKNDLSTKNVDPLVIKE
ALNIFTKNSAKKHEEGAKTNNTSNVVLSIPEKHVKNLTEQNTDSGKTIIL
AVPVKLTDKDMLEQQVNAIKEKLLALGEESGKTNTTSLTLKNDRESGPRL
NEKEPSIPHLNEKEMAGPHLNEKDASLQHSKEGGSVGPRLNEKEPSGAVK
ETTKDSNEVKHLSTTNVDSGKDENTKGSGSHIDGSKESNDAKQSPQFTFP
VPSPVEKHLNEITENPISSVNTAQPVLDELKETGAEIAGEDGREKQSKGF
LEAIAKLKNKEQQKVASTNQEQDGDDDVANNQPQTVPSNTALSTEVEDNS
DESKIIPTESQTSEASKNNDEEDDESLSSASSSQGLSNKNVATTGYQKPA
NIKPPLQTNTNARQGAKAAVGTLSQEDADEDTEEEEGDEDAQLKGNRYLL
PGKQASGHRASSSLFKGKEYKPSHIPVTFHKHLSGSSHFKSGDFKPSYIP
MTYHKHGGSTSKFKGGDYKPSRIPMTFKNIRHDSKPKDNHLIDDDGCRVS
CKRVCTPSCRFECCKGGDKKTNAKNVGKGLHSQKFNTRNVGKHLHKKKMK
DSKIEDKVKSINQKISKLLKKPASKALAFKDLPSLPKLRKKINYDSKKGQ
KFLKETQKKLESLISLLSKSSDELNYGPRTSASKKTLSCDAECKVMCLPS
CKFECCKQ
Run BLAST on NCBI

transcript from alignment at sc0000061:571426..578381+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005853 ID=TCONS_00005853|Name=TCONS_00005853|organism=Clytia hemisphaerica|type=transcript|length=6956bp|location=Sequence derived from alignment at sc0000061:571426..578381+ (Clytia hemisphaerica)
GTTCGAAAATTCTACTAataaatggtttgtttttaaaacattctttttcc
atgaagaacttaaattttgattgatgTATAATGGACAATACAATCTGACG
GATAATTAGATATTAATGATGGGTTTCTATAGAGgatttttggttttatt
tttgatgtgtCTCATTCTCAAAGAGGCTGTATGTAtgaaaaataatcatc
agcATGAAAAAGGTAAGAAAATCTACAGGAAAAATGGTACTACCCGGAAA
CATTATTTCAAGTAAAGGTCTAGAAATTTGGTAATTTTAGTCCATAATAA
ATTCcggaagaaatatttttccttgcaaaatttttgttacttctggatct
gtaaaccaaaacaaacacaTATAATTTGCATTGGATTTCGAATTAGCAGA
GAGGGATAACTCCTGACTGACAGATttaatggttttgtttttaaataaca
gtgatatcgtttgctaaCTCAATTTTAACATGAAggattttaatttacaa
gctttttcacattgaattgacacggatgtggcgcaagattggtcagaatg
AGGAAAGGAAAAgttatattttgtttattcagaataatataataatagga
TGACACTGTTCTgttatgaaatatgtgtctgatatgaaacgggaacactt
ctgtaaaaataaaacctttaaggttTAGATTTATAAAATTCGGTGATTTT
GGTCCATTAATTCcggaagaaatattttttcttgcaCAATTTTTGTTAAT
GTTTgcatttgaaaatcaaaacgctctaaacatttttggaatcttAATTT
TCCGATCTATAGGAAACACCAAACAAGACCCCACAAAAGAGCAGGACTTG
AGTGAACTCAAAGAACTTCATCAACTGGTCGAGAAGTTTGCTCAAAACCA
AGCCATAAGAGGAAACAAGCGTACTTCAACACCAAGAACAGCTTTGGTAA
CTTCCCCTGTAGTCCATAATGGCAAGACACCATTATCAAGCAGCAAGACT
GTAATGGCAACTGTTCCAAAGAAGAGAACCACAAGTGGGGTAGTAAACAC
TATCGAGAGGCTACAGAATGCTATTGGTGTGGATGCAGTAGGTGGTGAAG
AGGACCAACCTACCATAATGTTAGAGGCTGCCTCCTCTGGATCAGGGGAT
GAAGACGGTGGAATGGAGGAGATATCAGGATCAGGGAGTGGTAGTGGTGC
CTCTAAGGAGGACGCCGAATGGGTACCAGTCATCTTGGACGAGGGAAGCA
ACCCCAGGGGAGCAGTGACCAAAAATAAGGCAGTTCAAAGAAACGTAAAG
CAAGTGCAGAAAGCAACCCAAAAGAAAACACCGGCAACGCAAAAATCAAA
TCAGAAAGTACGGTACGAACAAAAAATTGCATTAACGAATACCAAAATGT
CATCACCACAAATCAAAACGCAAACTATGAACTACGCTAATATCCACTAC
CAACAACAGAGACTTCAGACCAATCCTTTAAACGCATATCAGAACTACTG
GCCCCAATACAACCAAAATAAAGGGAGTGTAAAAACTGCAACACCAAAAG
GGAGTGGAATAACTGCTATACGAAACCAAATGAGGCTCAATGTAAATTAC
GTAGCACCCAAAGCTCAGAGTGCAAGTCAAGTTCAACCACAAAATTCAGT
TGGTGCTATTCAATCAGCAATGATTCAACCAGCTCAACCAAAAGTACGTA
TATGATACCAGGTTTACCACAGataattttctcttttctaagtgtatttt
ctcgagttctttgagattcaaaattgaaaggaattgtATTTTGCAAACAG
ACAAGCCAACCTAGCCTGGCTATGATTTCTTTTAtttactgatggcgaaa
tgaataGCATGATTTGGGCTACGAGTTTGAATCTTCCAGCTCCAAATCAC
AGTTGAAAAcgcagccaatcaaattttgttaccATTTTGTTACCATTTGG
TCAAAAAACACAAGTTTCAAAATTGTGTTGATTTTaataagtgaggacag
cgctaaatccGGATTTTCTACTGTGGGCCTACTGTTAATTATTTGAGGCA
AAAATCTGCCTCACTGGTCAAACCCGTCCgctatacatcagattataaaa
atacaggacgggtctcctAGCCGACCAAGCCTAGAAAGATAATAAATCTA
TAACATCACAGCATTGTGAGTATTTTAAACGTTAATCTTTTGAATTGATA
GATTTCAGCCCCGACCAAAGTTTTAACCGTCCGCAAGGAGACCTCCaaga
ataaaatcaaagaaaccAAATtgtcaaaaactgctgacggtGCAGAAGAT
ACTGATGAGGATGATGATGAACAGAAAACGATTGATCTTCTCTTCGATAT
ACAGGAAGAAAATCATGCtggtcaaaagaagaaaaagaatcaCAACAAAA
AGAAGGTAAGGTATCTTCCGATTATCCTGTAGATGCGGTACGCTGTTAGA
ATTAACGCATCTActttaaaaggaagaaaatttggtggatttggcgaatt
taccCAAAATTCACCAGATTATAAAGTTCCCGtcaaaatgtttattttaa
aacacaaaatgtgtattcatttctaattttttactttaaaaaaattaatg
gaTGATCTGGATAATGAATCAACCCCAAGGGTGgatgtctttttgatttc
ttaacATATTTTACTGAACTTTTCTAGAGTCACAAGAAGAACAAGAACGC
AAAAGGGAAGAAGAataaaacacaacaaaaatcgtctgtcaaagaaaata
aaaatgtcccTGAGCAACCCGTATCCGAAGTATTGATGTTTTCAGGTAGC
AAATTATTAAcgttattttttatatattttcttgaATAGCTCCTTATTGG
GTTAGGTGCCAAATCAAGAAGTTCCTCCCATTGTATATACTTTTAAAATC
CTAGAATAGTGAACAGTGTACTGGACACCAGAGGGGAAGGTCTTGAACTG
TTCAAATTATGAAGAAATTTCAGAGACCCGAGTTTTGGAGTCGATTAATA
CAGAGCTTCTCTTGAAAGCTAACTTTAAGAaactttcactttttttataa
atctaGATAACAAATCTACTTTGAATATCTAAATGTAGCCTGCAATCGTG
TCTCTTAGGAAGCAAATAGGAGTTTTCCATACCGTCTGAAGAGTATGTGC
CATATCGTAGGTATAACTGTATTAAAAAATTCCCGTAATAACTTCGTTGT
TTCAGGGAAAAATGATTTATCTACCAAGAATGTGGACCCTTTGGTCATCA
AAGAAGCGTTGAATATATTCACCAAGAATTCTGCCAAGAAACACGAGGAA
GGTGCTAAAACTAACAACACATCCAACGTTGTTTTATCCATACCagaaaa
acacgtcaaaaatctAACAGAACAGAATACAGACTCAGGGAAAACAATCA
TTTTAGCTGTTCCAGTGAAACTAACAGATAAAGATATGTTGGAGCAACAA
GTTAATGCTATTAAGGAGAAACTATTAGCTCTTGGTGAAGAATCAGGTAA
AACAAACACCACATCCCTGACACTCAAAAATGATAGGGAAAGTGGGCCAA
GACTGAACGAAAAAGAACCGTCTATACCTCACTTGAATGAAAAAGAGATG
GCCGGGCCACACCTAAACGAGAAGGATGCATCACTGCAGCATAGCAAGGA
AGGAGGATCTGTAGGTCCACGCCTTAATGAGAAAGAGCCATCAGGAGCAG
TAAAAGAAACAACAAAAGATAGCAATGAAGTCAAACATCTTTCAACAACA
AATGTAGATAGTGGAAAAGATGAAAATACGAAAGGTTCAGGATCACATAT
AGATGGATCTAAAGAATCAAACGATGCGAAACAATCACCTCAATTCACGT
TCCCGGTACCTTCACCAGTCGAGAAACATCTGAATGAAATCACTGAGAAT
CCAATATCTTCGGTGAATACAGCTCAACCGGTTCTTGATGAACTTAAAGA
GACTGGTGCTGAAATTGCTGGTGAAGACGGCCGCGAAAAACAAAGTAAAG
GATTTTTGGAAGCCATTGCTAAATTGAAGAATAAAGAGCAACAAAAGGTA
TGATATCaacttttggtgttttttggCTGGGTGGGGCTTCTTCTTATTGG
GTGAGTATGAATTTTAGTATGCAAAACTTTCATCAAAGTGAAtaatttta
aacaaattctTATTGGGAAACAAGATTTTGTATGGGTATAAATTATATGC
AAAACTTTCATTTAATTGGATGTTTTTTGGGGAGTTTTGAACGAGAAAAG
CAAATTAGTCATTCAATTGAGGAATAATCGAATGATTTCCAACCTGACAA
GCCTTTCTTGTCGACTTAACATCACAGGAGGATTGGGTTTGAGTTTACTG
GGGTCGAATGTACTGATTTCTAACTACTTAATTGGGTTGGCTTCTCATAA
ATAGGAAAACGTGCCCAGTTTTATAGCTGTCTACTGtgtcattttgtttt
gtgttcTGGTCGCCAACAACATGAAAATTTAGACGTTCGAAAATATGACT
GAAAACAGAAAACATCATGGCGGGATAATGAACTAATCGAatcaaaaaac
tggttttaagGCCTGAGATGGCAAAAATTTGGAGGATGAACAAAATAACT
CAAGTTTGGCGAATGGTGGAATATAGTCATTTTAGCGGGaaacttaattt
ggcgattttgaAATACGCCgaattttctttcctttattaTAATCAGTCAG
CGAGATTAACTTTTGTTTCAATACCGTACTTTTCAATAATATCATATTAA
CTTTTCATCAGGTTGCATCGACCAATCAGGAACAAGATGGTGATGATGAC
GTCGCAAACAACCAACCACAAACTGTTCCATCCAATACAGCTCTTTCTAC
TGAAGTTGAAGATAACTCAGATGAAAGTAAAATCATACCAACTGAAAGCC
AAACAAGTGAAGCTTCCAAAAACAATGATGAAGAAGATGATGAGTCACTT
AGTAGTGCTTCCTCTAGTCAAGGATTATCGAATAAGAACGTGGCAACAAC
TGGTTACCAGAAACCAGCTAACATCAAACCTCCTCTCCAGACCAATACTA
ATGCGAGACAAGGAGCTAAAGCAGCAGTTGGGACTTTGTCTCAGGAGGAT
GCTGACGAGGATACAGAAGAGGAGGAAGGGGATGAAGATGCACAACTGAA
GGGTAACAGATACCTTCTTCCAGGGAAGCAGGCTAGTGGGCACCGAGCTT
CCTCCTCACTGTTCAAGGGTAAAGAATACAAGCCTTCTCATATACCAGTG
ACCTTTCATAAGCATCTCAGTGGATCCTCGCATTTTAAGAGTGGAGATTT
CAAGCCGTCTTACATACCAATGACTTACCACAAACATGGTGGTTCAACTT
CAAAATTTAAGGGAGGTGATTATAAGCCTTCGAGGATACCGAtgactttt
aaaaacattagaCATGACTCAAAACCGAAAGACAATCATTTGATTGATGA
CGATGGATGTCGCGTGAGCTGCAAACGTGTTTGTACACCAAGCTGTCGTT
TCGAATGCTGTAAAGGTGGGGATAAGAAAACGAATGCAAAGAATGTTGGC
AAAGGTTTACACAGCCAGAAATTCAATACAAGGAATGTGGGTAAACATTT
ACacaagaagaaaatgaaagattCAAAAATTGAAGATAAAGTGAAATCGA
TTAACCAAAAAATCAGTAAATTGTTGAAAAAACCAGCATCAAAAGCTCTG
GCGTTTAAAGATTTGCCAAGCTTACCAAAGCTGAGAAAGAAGATcaatta
tgattctaaaaaaggacaaaagtttttaaaagaaacacAAAAGAAATTAG
AATCATTGATTTCTTTGTTATCAAAATCTTCAGATGAATTGAATTATGGA
CCGAGAACTTCGGCAAGTAAAAAGACATTAAGTTGTGATGCAGAATGTAA
AGTAATGTGTTTACCAAGCTGTAAGTTTGAATGCTGTAAACAATAGCTGG
AACCTTGTAACTTATAGTATGAATGAAGATAGGTTTGTGACATAAATACA
TGAAACTTAAACATAAACTTAAGTTTAAGGCAAGATGTATACATGCAAAG
TGTAAAGTAATGTCTTTGCCAGTTCggatacaaattttacaaacaTTAAC
TGGAATGTGTTAAGCAAAGTGAATATTCGAATATTGCAAAACATAGCTGG
AACCTTGTGAGGACAATGTGTTAAGCAAGTTACACATTCGAAAATTACAG
ACAATAATTCAAACCCTGCTGTTTGAATTATAGAGACCAAAATGTAACTG
CTTTTTGATGAGGGCATGATACGAAATTATAATACAATGATAAAGCTATT
ATATTGGTAAATTGGAATAGTCTATTAACTGATAATTGGTACCTAGTTTC
AAATTAGAATATCCATCTGTGGCTAAACACACAGTTATGAGAAATCTCAT
ATTTCATAGAGATACAGGACGTGCACAATGAGCTATAATCGCCAATATGT
GACTGTAATTGAGTGAGCTCAGAGCAAGTTGGGCATTAGGGCAAAGACAA
TAATCTTCAATGAAGAGATTTGAGAAACATTTTACATTAAAGCTGGCATA
TAACAAGAACTTGAGAGATTGGATTTTAATGAGACAGcaataaaatttga
ttaaatgTAAAGATATATTTTCCAGGTTATCATGATAAAAgacaaaaatt
gtaaatatttttatgtgACAGAATATAATATAATACAGCAATGATAAAGC
AATAATTATTTTTATGTACAAAAGATaagattgatttgaaaatatagtaa
aacgAAGTTACGGTAACCGAAATGGGGATATCAAAAACAGTAAAAGTCTT
TTAAGACAGCCTCTGAAAGGTCTCagagattttcttttttgttagaAACT
CTTGTcattaaaactttgaaaattttttgaaccgaaagtttttaaataat
atgtgAGATATATTGATATAACCGCTCGAGTTTCGTGATgcgattctatt
tatttc

Coding sequence (CDS) from alignment at sc0000061:571426..578381+

>TCONS_00005853 ID=TCONS_00005853|Name=TCONS_00005853|organism=Clytia hemisphaerica|type=CDS|length=3327bp|location=Sequence derived from alignment at sc0000061:571426..578381+ (Clytia hemisphaerica)
ATGATGGGTTTCTATAGAGgatttttggttttatttttgatgtgtCTCAT
TCTCAAAGAGGCTGTATGTAtgaaaaataatcatcagcATGAAAAAGGAA
ACACCAAACAAGACCCCACAAAAGAGCAGGACTTGAGTGAACTCAAAGAA
CTTCATCAACTGGTCGAGAAGTTTGCTCAAAACCAAGCCATAAGAGGAAA
CAAGCGTACTTCAACACCAAGAACAGCTTTGGTAACTTCCCCTGTAGTCC
ATAATGGCAAGACACCATTATCAAGCAGCAAGACTGTAATGGCAACTGTT
CCAAAGAAGAGAACCACAAGTGGGGTAGTAAACACTATCGAGAGGCTACA
GAATGCTATTGGTGTGGATGCAGTAGGTGGTGAAGAGGACCAACCTACCA
TAATGTTAGAGGCTGCCTCCTCTGGATCAGGGGATGAAGACGGTGGAATG
GAGGAGATATCAGGATCAGGGAGTGGTAGTGGTGCCTCTAAGGAGGACGC
CGAATGGGTACCAGTCATCTTGGACGAGGGAAGCAACCCCAGGGGAGCAG
TGACCAAAAATAAGGCAGTTCAAAGAAACGTAAAGCAAGTGCAGAAAGCA
ACCCAAAAGAAAACACCGGCAACGCAAAAATCAAATCAGAAAGTACGGTA
CGAACAAAAAATTGCATTAACGAATACCAAAATGTCATCACCACAAATCA
AAACGCAAACTATGAACTACGCTAATATCCACTACCAACAACAGAGACTT
CAGACCAATCCTTTAAACGCATATCAGAACTACTGGCCCCAATACAACCA
AAATAAAGGGAGTGTAAAAACTGCAACACCAAAAGGGAGTGGAATAACTG
CTATACGAAACCAAATGAGGCTCAATGTAAATTACGTAGCACCCAAAGCT
CAGAGTGCAAGTCAAGTTCAACCACAAAATTCAGTTGGTGCTATTCAATC
AGCAATGATTCAACCAGCTCAACCAAAAATTTCAGCCCCGACCAAAGTTT
TAACCGTCCGCAAGGAGACCTCCaagaataaaatcaaagaaaccAAATtg
tcaaaaactgctgacggtGCAGAAGATACTGATGAGGATGATGATGAACA
GAAAACGATTGATCTTCTCTTCGATATACAGGAAGAAAATCATGCtggtc
aaaagaagaaaaagaatcaCAACAAAAAGAAGAGTCACAAGAAGAACAAG
AACGCAAAAGGGAAGAAGAataaaacacaacaaaaatcgtctgtcaaaga
aaataaaaatgtcccTGAGCAACCCGTATCCGAAGTATTGATGTTTTCAG
GGAAAAATGATTTATCTACCAAGAATGTGGACCCTTTGGTCATCAAAGAA
GCGTTGAATATATTCACCAAGAATTCTGCCAAGAAACACGAGGAAGGTGC
TAAAACTAACAACACATCCAACGTTGTTTTATCCATACCagaaaaacacg
tcaaaaatctAACAGAACAGAATACAGACTCAGGGAAAACAATCATTTTA
GCTGTTCCAGTGAAACTAACAGATAAAGATATGTTGGAGCAACAAGTTAA
TGCTATTAAGGAGAAACTATTAGCTCTTGGTGAAGAATCAGGTAAAACAA
ACACCACATCCCTGACACTCAAAAATGATAGGGAAAGTGGGCCAAGACTG
AACGAAAAAGAACCGTCTATACCTCACTTGAATGAAAAAGAGATGGCCGG
GCCACACCTAAACGAGAAGGATGCATCACTGCAGCATAGCAAGGAAGGAG
GATCTGTAGGTCCACGCCTTAATGAGAAAGAGCCATCAGGAGCAGTAAAA
GAAACAACAAAAGATAGCAATGAAGTCAAACATCTTTCAACAACAAATGT
AGATAGTGGAAAAGATGAAAATACGAAAGGTTCAGGATCACATATAGATG
GATCTAAAGAATCAAACGATGCGAAACAATCACCTCAATTCACGTTCCCG
GTACCTTCACCAGTCGAGAAACATCTGAATGAAATCACTGAGAATCCAAT
ATCTTCGGTGAATACAGCTCAACCGGTTCTTGATGAACTTAAAGAGACTG
GTGCTGAAATTGCTGGTGAAGACGGCCGCGAAAAACAAAGTAAAGGATTT
TTGGAAGCCATTGCTAAATTGAAGAATAAAGAGCAACAAAAGGTTGCATC
GACCAATCAGGAACAAGATGGTGATGATGACGTCGCAAACAACCAACCAC
AAACTGTTCCATCCAATACAGCTCTTTCTACTGAAGTTGAAGATAACTCA
GATGAAAGTAAAATCATACCAACTGAAAGCCAAACAAGTGAAGCTTCCAA
AAACAATGATGAAGAAGATGATGAGTCACTTAGTAGTGCTTCCTCTAGTC
AAGGATTATCGAATAAGAACGTGGCAACAACTGGTTACCAGAAACCAGCT
AACATCAAACCTCCTCTCCAGACCAATACTAATGCGAGACAAGGAGCTAA
AGCAGCAGTTGGGACTTTGTCTCAGGAGGATGCTGACGAGGATACAGAAG
AGGAGGAAGGGGATGAAGATGCACAACTGAAGGGTAACAGATACCTTCTT
CCAGGGAAGCAGGCTAGTGGGCACCGAGCTTCCTCCTCACTGTTCAAGGG
TAAAGAATACAAGCCTTCTCATATACCAGTGACCTTTCATAAGCATCTCA
GTGGATCCTCGCATTTTAAGAGTGGAGATTTCAAGCCGTCTTACATACCA
ATGACTTACCACAAACATGGTGGTTCAACTTCAAAATTTAAGGGAGGTGA
TTATAAGCCTTCGAGGATACCGAtgacttttaaaaacattagaCATGACT
CAAAACCGAAAGACAATCATTTGATTGATGACGATGGATGTCGCGTGAGC
TGCAAACGTGTTTGTACACCAAGCTGTCGTTTCGAATGCTGTAAAGGTGG
GGATAAGAAAACGAATGCAAAGAATGTTGGCAAAGGTTTACACAGCCAGA
AATTCAATACAAGGAATGTGGGTAAACATTTACacaagaagaaaatgaaa
gattCAAAAATTGAAGATAAAGTGAAATCGATTAACCAAAAAATCAGTAA
ATTGTTGAAAAAACCAGCATCAAAAGCTCTGGCGTTTAAAGATTTGCCAA
GCTTACCAAAGCTGAGAAAGAAGATcaattatgattctaaaaaaggacaa
aagtttttaaaagaaacacAAAAGAAATTAGAATCATTGATTTCTTTGTT
ATCAAAATCTTCAGATGAATTGAATTATGGACCGAGAACTTCGGCAAGTA
AAAAGACATTAAGTTGTGATGCAGAATGTAAAGTAATGTGTTTACCAAGC
TGTAAGTTTGAATGCTGTAAACAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003343XLOC_003343Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005853-proteinTCONS_00005853-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005853-exon-sc0000061-1491911889:571426..571637TCONS_00005853-exon-sc0000061-1491911889:571426..571637Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:571426..571637TCONS_00005853-exon-sc0000061-1510915933:571426..571637Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:571426..571637TCONS_00005853-exon-sc0000061-1575043694:571426..571637Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1491911889:572238..573118TCONS_00005853-exon-sc0000061-1491911889:572238..573118Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:572238..573118TCONS_00005853-exon-sc0000061-1510915933:572238..573118Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:572238..573118TCONS_00005853-exon-sc0000061-1575043694:572238..573118Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1491911889:573627..573830TCONS_00005853-exon-sc0000061-1491911889:573627..573830Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:573627..573830TCONS_00005853-exon-sc0000061-1510915933:573627..573830Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:573627..573830TCONS_00005853-exon-sc0000061-1575043694:573627..573830Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1491911889:574103..574220TCONS_00005853-exon-sc0000061-1491911889:574103..574220Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:574103..574220TCONS_00005853-exon-sc0000061-1510915933:574103..574220Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:574103..574220TCONS_00005853-exon-sc0000061-1575043694:574103..574220Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1491911889:574631..575472TCONS_00005853-exon-sc0000061-1491911889:574631..575472Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:574631..575472TCONS_00005853-exon-sc0000061-1510915933:574631..575472Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:574631..575472TCONS_00005853-exon-sc0000061-1575043694:574631..575472Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1491911889:576187..578381TCONS_00005853-exon-sc0000061-1491911889:576187..578381Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1510915933:576187..578381TCONS_00005853-exon-sc0000061-1510915933:576187..578381Clytia hemisphaericaexon
TCONS_00005853-exon-sc0000061-1575043694:576187..578381TCONS_00005853-exon-sc0000061-1575043694:576187..578381Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:571426..578381 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.100976	0.0738306	0.0570067	0.00928677	0.0565113	0.0714534	3.32347	4.23751	1.09852	1.00618	1.91344	1.881	4.34152	3.62959	2.7184	6.86111	3.68881	3.55917	0	0.00930584	1.96636	1.90163	1.08268	1.39038	2.88239	3.8004	0.408976	0.0496416	0.0280439	0.0095303
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005853 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
back to top