TCONS_00005871 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005871
Unique NameTCONS_00005871
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length4673

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005871 ID=TCONS_00005871|Name=TCONS_00005871|organism=Clytia hemisphaerica|type=transcript|length=4673bp
CGTTAAGCGTGAAAGCAGAGATGCTTGTGATATACACCAGCATCAATTTA
TCGGTGACAAATATTATAGAGATGGAATGGAAGTTCTCCAGACTCCTACT
TTGAGTGATTCTGATATCAATGGGAAATACGAGCAAGAGCCTCCTGAACA
ACAAACTACCAAATATAACCTTAGAGATGAATTTTCTCCAAAAGTCGCAT
GCTGCAAACCAGAAAAATCTTCACACTTGAAAGACGATCATGTTTCCATC
AAAAGCCATTGCAAAACGAAGTATTCATTGATAAAAAACAATACACACGA
TCTTAATGAGAATTTACCAAGACAGACCAGTGATTCTCCAGATTCTTCAA
TCGAAACTTCAATAACACCACAAGACAGTGGAGATACAGTCAAAAATCTG
AGAATGATCACACTTAATCTGAAGATAAGTAAGGACGATCATGATAGTGT
CGTTTTACCTGACTACATTAGAAAGTCACCAGATCCTCAAAACCGACCTG
CCATATCATATAAAGTCTCTGGTGAAAATTTTCATGAGGAATTATTCGTT
CTTTACGATTGTCGTGAAGTTAACAACAATGTTAGTGGTAACGAGTGTCA
TGATAGCTTTGACGATGATAGCTTTGGTAATTCACCAAAAGATAGCGAAA
ATCATCAAGGTGCAGAACCATCAAGTAAAGATAAAGAAACTGACAAACAT
CCTTCTGAAAGTCAGCATGACGAGTCACCAAAAGGTTCGCTCAAAAATGG
AAATTCCCTATTTGACACTACCCAGAACTGCAAAACGACTTTAGAGGGAG
ATCTCCAGGATAATGTAGACGGATTGCAGGAGCATTCCCTGAGTAATAAT
GGTCGATTTTCTGGTGATTTTGTGGTAGCCATATCAGATCTAGATATCGC
ATCTGATGAAAGTATTTCTTCAGATAACAACAATAACACTGATTCCCATC
CACTAGACGTAGAAAACTCTTCTAAAAATGTACATCCACATGAAGGTGTT
GAACGTGAAAACCTCCCTTTCGAAgattgtactttttgttttcttcaaac
tttaTCCGAAAGCAAGATGGGTGGATTTACATGCTTAAATGAAATCGATG
GAAAAGAAAATCGTGGTCAAACTGGATctgttaaaaacaaaacattcacC
AGTGATATCGATCTCAGTGAATCTGACCACTCCAGCAGTTCAAAATTCAC
CGACAGTGAGAGCTTGTTAAGAACGTTGAATGCacaaatagaaaatttga
atacaGCTCAAAAGACGTTGCAAAATGTCGAGAATGCAAAGAGAGATATA
GATGAGTTTACCAAGCTATGTCGAGAGTCCTTATCAAAGATGAACAAAAC
TACAGAAGAGAATCCGTCTGAAAGAATAAGCAAAGTTGGGGAAGATAGTT
CAAACACTGATGGAATTGTAAAGACGGACAAGCAGCAACAAATCGTTCAA
CAGAGAAATGCTGAAACTGAAATAAATCAAAGCATTTCAAATCAAGTTGT
TAAGATAGATTCGACTTCAAAAGATAGCAATTCGGAAGCAGAAGTTAACA
ACTTTCAACTACGAAATAGCCAATTTGAACCAAATCAAAACGATCCTCAT
TATGGTAGCGAAATTTATTCCATTTCAAGAGATACCATTACAGAAGATAT
GGAAACTAAAGCAAGATCAGCATTGATACCAGTATCTTACGAGTCTTTAC
CATCGATGTATAGGGACGATGATCTCTTGGGACGTGACGAAAATAATATT
GGAAAAACAGAACCTTATCCAGAATTTAATACAACCAATTCTGAGGAAAA
TCTAAAAGCGAAAAATCCATTCCAGAAGAGCAGTTCTTTTGATGTATTGA
GTTCTGAGACAGACAATCCAACAGATTTATTCAACCTTCGGAAAAGCAAC
TCACTAGATTTATTAAATACCGACAAAAGCAGTTCACTGGATTTGTTTAG
TAAGGAAGATGCGTTCGATTCTACTTATGACTCATTGAAGAACAATCCCT
TCCAGAAAGATATGTTTGATAAATATTTGGAACAATTCGATCCATCTGTA
ATCACCAGTAATGGAGTTACCATGAATGATGAGGATACTAATGATGATTT
GGACGATATGACATTCTCACATGGCGATGGTTTAGATGATGATTGTCTTG
AAATGTTGCCAGATGATTCTCAATATGAACCAATCATTGAAAACATTGGC
AACGATCTTTCTAGACCAGAAGAAACTGAAGATTTCAATACCAAGAACCA
TGTTGGTAATGTTGAAGAAGATGATGGAATCAACGAAGATTCTTCTCTTA
ATCAAAGAAAAACAGCTgaggatgaaattttcaatcatcaatcaaataat
gtGAACCATGTTTGGAATGCAGAAGAAGCTGATGGAATCGACATCTTTGG
CAACGGAGATTCTTCTGTTAAACAAGGAGAAACAACCACAGATGAATATT
CAAATCACGAGGAAACAGCCAAGGATGGAAATTCAAATCAAGAGGAAACA
GCTAGGGATGAAACTTTCAATCGACTATCAACAAATGAGGATCTTGCTGG
TATTTTAAAAGAAACTGGTGGAATGAACACCTCCGGTAATGAATATTTTA
CAATGAAAAGTGGTAGAACTTTTAGGAATCAAGGAATAACAAACGATATC
AGAGCTGATCAAAATCAACGGGACATTTTTGGCATGAATGATGAATATTC
ATTTACCAAAAAAACCACAGACTATAATCATCTTCGTTTAGATCTCAAAT
CACCGCATAGTTTAACTGAAGATTTTCCAACCccaaaatatgattcttca
atttcTCCAAATACTGAATGCTCGAAATCGATCGTCACTTCAACCGTCAC
TGATTGCATTAGTGAGAAATTGTTTATTGATCAAGATGAAAATTTCTCTA
ACACTTTCCATACAACATGTTCAGAATCGGTGGATACTGTTTCAAGTCAA
CCAACTGATGATTATATAATTCCTCCCAACATAATTACCAAATCCTCGCA
TCTTTACcccaaaattggtcaaaactcGAGCAAACAGATTGATGATTCTC
TAAATTCTTCCAACATTATTACATCAAAACATGGTTCCAATACGCTGTTA
GCTTCATCAATTCTTGGTAACAATCAACCCCTTCAAAATCCAAACTCAGA
AGACTCAAAACCGGATCTGCAAGTATCTACCAATCACAGAACAGATCTGC
AAATATCCAACAATCACAGAGAAGATCTGCAAATATCCACCAATCACAGA
GCAGATCTCCAAGAATCCACCAATCACAAAACAGATCTCCAAGAATCCAC
CAATCACAATGCAGATCTTCAAGAATCCACCAATCACAGAGCAGATCTGC
AAGAATCCACTAGTCACAAAGCAGACCTCCAAATATTCACCAATCACAGA
GCAGATCTGAAAAGATCCACCAATCACAAATCACTCAATGATAAAGTTGA
TATCACAAACGAGAGACTTCAAAACGCATTTCGATACATGGACcgttatt
tcaaagaaaaaggaaTCCAAGATAAATTATTGAATCCTGAAATCAGAATC
GAAGAATCGGCTGCTGACACTCAAACACCAGATTCATCGCATCGACCATC
ATTGGTTAAAAGCACCAAAACAGCCTTCAACACAATTACAAAAATTAATG
AATCATTGACCAAAACAAACCCGTTCGAAGACCAATCTGATTCTTCAAAT
GAAGCTAATACgaacaaaaatttaaagtacGATGCATTTGAAATCGATAT
AACAAGCCGTCTTCAACATAGTAGCAAGGAAGTGTCTGGCAATAACTATC
GGCGCTTAAATTTCGACACCAGAAAAAATAGAGACACCTTTGATGACATC
GCTGATGTTGCCAGTGTCCCAAACCATGGAAAACCCGATGAGTCATCTGA
CAAAGCGATTGAAGAGAACCGATGTACCAGATCTGTGACCAACAACAAAT
TCGATCAACAAATGATTAACACGACaACGTACAAAGATTATGGCACACCT
TTAATCATTGATAATGGTTCAGGGATGATCAAGATCGGACTGGCAAATAA
AGAATCTCCAAATTATATCCCAAACATTGTTGGCACTGAGAATTATCAGa
aAGTGATGGGTGGTAGTACTGAAGATCCTTCATCCAACGAACGAATGGTT
GGATGGAAAGCAGACCAGTATCGTGGTATACTAAAGTTACGGTATCCGAT
GCAAAATGGTGTCATTGATGATTGGGATGCCATGATTGATgtaTGGACTT
ATTCTATTGAGGAGCAACTGGAAATTAACTCTTCTGATCACCCCATCTTG
ATAACAGAGAATGTATTATCTCCCAAACATCATCGAGAACGTATGATGGA
GATAATGATGGAAACATTTGAAATACCTGCGTACTACTCTACTCAACAAG
GTGTCATGACACTTTATAGTGCTGGTCGAGTTTCAGGAATCGTTCTCGAC
AGTGGAGATACATTATCACAAATCGTTCCTGTTTATGAGGGGTATGGAAT
CAAGCATGCAACCGAGGCTATTCAAATTGGTGGGCGTGACGTCACAGATT
ATTTACGAACATTAATCACGCGGAAAGGCCGTTCTATGCCGACGTCAGCA
GAATTTGAGATCGTGAAAAAGATGAAAGaagaattttgttttgtgaAGAA
TCACGAGGAGGATAAGATGAAGA
Run BLAST on NCBI

protein sequence of TCONS_00005871-protein

>TCONS_00005871-protein ID=TCONS_00005871-protein|Name=TCONS_00005871-protein|organism=Clytia hemisphaerica|type=polypeptide|length=1557bp
VKRESRDACDIHQHQFIGDKYYRDGMEVLQTPTLSDSDINGKYEQEPPEQ
QTTKYNLRDEFSPKVACCKPEKSSHLKDDHVSIKSHCKTKYSLIKNNTHD
LNENLPRQTSDSPDSSIETSITPQDSGDTVKNLRMITLNLKISKDDHDSV
VLPDYIRKSPDPQNRPAISYKVSGENFHEELFVLYDCREVNNNVSGNECH
DSFDDDSFGNSPKDSENHQGAEPSSKDKETDKHPSESQHDESPKGSLKNG
NSLFDTTQNCKTTLEGDLQDNVDGLQEHSLSNNGRFSGDFVVAISDLDIA
SDESISSDNNNNTDSHPLDVENSSKNVHPHEGVERENLPFEDCTFCFLQT
LSESKMGGFTCLNEIDGKENRGQTGSVKNKTFTSDIDLSESDHSSSSKFT
DSESLLRTLNAQIENLNTAQKTLQNVENAKRDIDEFTKLCRESLSKMNKT
TEENPSERISKVGEDSSNTDGIVKTDKQQQIVQQRNAETEINQSISNQVV
KIDSTSKDSNSEAEVNNFQLRNSQFEPNQNDPHYGSEIYSISRDTITEDM
ETKARSALIPVSYESLPSMYRDDDLLGRDENNIGKTEPYPEFNTTNSEEN
LKAKNPFQKSSSFDVLSSETDNPTDLFNLRKSNSLDLLNTDKSSSLDLFS
KEDAFDSTYDSLKNNPFQKDMFDKYLEQFDPSVITSNGVTMNDEDTNDDL
DDMTFSHGDGLDDDCLEMLPDDSQYEPIIENIGNDLSRPEETEDFNTKNH
VGNVEEDDGINEDSSLNQRKTAEDEIFNHQSNNVNHVWNAEEADGIDIFG
NGDSSVKQGETTTDEYSNHEETAKDGNSNQEETARDETFNRLSTNEDLAG
ILKETGGMNTSGNEYFTMKSGRTFRNQGITNDIRADQNQRDIFGMNDEYS
FTKKTTDYNHLRLDLKSPHSLTEDFPTPKYDSSISPNTECSKSIVTSTVT
DCISEKLFIDQDENFSNTFHTTCSESVDTVSSQPTDDYIIPPNIITKSSH
LYPKIGQNSSKQIDDSLNSSNIITSKHGSNTLLASSILGNNQPLQNPNSE
DSKPDLQVSTNHRTDLQISNNHREDLQISTNHRADLQESTNHKTDLQEST
NHNADLQESTNHRADLQESTSHKADLQIFTNHRADLKRSTNHKSLNDKVD
ITNERLQNAFRYMDRYFKEKGIQDKLLNPEIRIEESAADTQTPDSSHRPS
LVKSTKTAFNTITKINESLTKTNPFEDQSDSSNEANTNKNLKYDAFEIDI
TSRLQHSSKEVSGNNYRRLNFDTRKNRDTFDDIADVASVPNHGKPDESSD
KAIEENRCTRSVTNNKFDQQMINTTTYKDYGTPLIIDNGSGMIKIGLANK
ESPNYIPNIVGTENYQKVMGGSTEDPSSNERMVGWKADQYRGILKLRYPM
QNGVIDDWDAMIDVWTYSIEEQLEINSSDHPILITENVLSPKHHRERMME
IMMETFEIPAYYSTQQGVMTLYSAGRVSGIVLDSGDTLSQIVPVYEGYGI
KHATEAIQIGGRDVTDYLRTLITRKGRSMPTSAEFEIVKKMKEEFCFVKN
HEEDKMK
Run BLAST on NCBI

transcript from alignment at sc0000061:993413..999834+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005871 ID=TCONS_00005871|Name=TCONS_00005871|organism=Clytia hemisphaerica|type=transcript|length=6422bp|location=Sequence derived from alignment at sc0000061:993413..999834+ (Clytia hemisphaerica)
CGTTAAGCGTGAAAGCAGAGATGCTTGTGATATACACCAGCATCAATTTA
TCGGTGACAAATATTATAGAGATGGAATGGAAGTTCTCCAGACTCCTACT
TTGAGTGATTCTGATATCAATGGGAAATACGAGCAAGAGCCTCCTGAACA
ACAAACTACCAAATATAACCTTAGAGATGAATTTTCTCCAAAAGTCGCAT
GCTGCAAACCAGAAAAATCTTCACACTTGAAAGACGATCATGTTTCCATC
AAAAGCCATTGCAAAACGAAGTATTCATTGATAAAAAACAATACACACGA
TCTTAATGAGAATTTACCAAGACAGACCAGTGATTCTCCAGATTCTTCAA
TCGAAACTTCAATAACACCACAAGACAGTGGAGATACAGTCAAAAATCTG
AGAATGATCACACTTAATCTGAAGATAAGTAAGGACGATCATGATAGTGT
CGTTTTACCTGACTACATTAGAAAGTCACCAGATCCTCAAAACCGACCTG
CCATATCATATAAAGTCTCTGGTGAAAATTTTCATGAGGAATTATTCGTT
CTTTACGATTGTCGTGAAGTTAACAACAATGTTAGTGGTAACGAGTGTCA
TGATAGCTTTGACGATGATAGCTTTGGTAATTCACCAAAAGATAGCGAAA
ATCATCAAGGTGCAGAACCATCAAGTAAAGATAAAGAAACTGACAAACAT
CCTTCTGAAAGTCAGCATGACGAGTCACCAAAAGGTTCGCTCAAAAATGG
AAATTCCCTATTTGACACTACCCAGAACTGCAAAACGACTTTAGAGGGAG
ATCTCCAGGATAATGTAGACGGATTGCAGGAGCATTCCCTGAGTAATAAT
GGTCGATTTTCTGGTGATTTTGTGGTAGCCATATCAGATCTAGATATCGC
ATCTGATGAAAGTATTTCTTCAGATAACAACAATAACACTGATTCCCATC
CACTAGACGTAGAAAACTCTTCTAAAAATGTACATCCACATGAAGGTGTT
GAACGTGAAAACCTCCCTTTCGAAgattgtactttttgttttcttcaaac
tttaTCCGAAAGCAAGATGGGTGGATTTACATGCTTAAATGAAATCGATG
GAAAAGAAAATCGTGGTCAAACTGGATctgttaaaaacaaaacattcatN
TGGAAAAGAAAATCGCGGTCAAACTGGATCtgttaaaaataaaacattca
cCAGTGATATCGATCTCAGTGAATCTGACCACTCCAGCAGTTCAAAATTC
ACCGACAGTGAGAGCTTGTTAAGAACGTTGAATGCacaaatagaaaattt
gaatacaGCTCAAAAGACGTTGCAAAATGTCGAGAATGCAAAGAGAGATA
TAGATGAGTTTACCAAGCTATGTCGAGAGTCCTTATCAAAGATGAACAAA
ACTACAGAAGAGAATCCGTCTGAAAGAATAAGCAAAGTTGGGGAAGATAG
TTCAAACACTGATGGAATTGTAAAGACGGACAAGCAGCAACAAATCGTTC
AACAGAGAAATGCTGAAACTGAAATAAATCAAAGCATTTCAAATCAAGTT
GTTAAGATAGATTCGACTTCAAAAGATAGCAATTCGGAAGCAGAAGTTAA
CAACTTTCAACTACGAAATAGCCAATTTGAACCAAATCAAAACGATCCTC
ATTATGGTAGCGAAATTTATTCCATTTCAAGAGATACCATTACAGAAGAT
ATGGAAACTAAAGCAAGATCAGCATTGATACCAGTATCTTACGAGTCTTT
ACCATCGATGTATAGGGACGATGATCTCTTGGGACGTGACGAAAATAATA
TTGGAAAAACAGAACCTTATCCAGAATTTAATACAACCAATTCTGAGGAA
AATCTAAAAGCGAAAAATCCATTCCAGAAGAGCAGTTCTTTTGATGTATT
GAGTTCTGAGACAGACAATCCAACAGATTTATTCAACCTTCGGAAAAGCA
ACTCACTAGATTTATTAAATACCGACAAAAGCAGTTCACTGGATTTGTTT
AGTAAGGAAGATGCGTTCGATTCTACTTATGACTCATTGAAGAACAATCC
CTTCCAGAAAGATATGTTTGATAAATATTTGGAACAATTCGATCCATCTG
TAATCACCAGTAATGGAGTTACCATGAATGATGAGGATACTAATGATGAT
TTGGACGATATGACATTCTCACATGGCGATGGTTTAGATGATGATTGTCT
TGAAATGTTGCCAGATGATTCTCAATATGAACCAATCATTGAAAACATTG
GCAACGATCTTTCTAGACCAGAAGAAACTGAAGATTTCAATACCAAGAAC
CATGTTGGTAATGTTGAAGAAGATGATGGAATCAACGAAGATTCTTCTCT
TAATCAAAGAAAAACAGCTgaggatgaaattttcaatcatcaatcaaata
atgtGAACCATGTTTGGAATGCAGAAGAAGCTGATGGAATCGACATCTTT
GGCAACGGAGATTCTTCTGTTAAACAAGGAGAAACAACCACAGATGAATA
TTCAAATCACGAGGAAACAGCCAAGGATGGAAATTCAAATCAAGAGGAAA
CAGCTAGGGATGAAACTTTCAATCGACTATCAACAAATGAGGATCTTGCT
GGTATTTTAAAAGAAACTGGTGGAATGAACACCTCCGGTAATGAATATTT
TACAATGAAAAGTGGTAGAACTTTTAGGAATCAAGGAATAACAAACGATA
TCAGAGCTGATCAAAATCAACGGGACATTTTTGGCATGAATGATGAATAT
TCATTTACCAAAAAAACCACAGACTATAATCATCTTCGTTTAGATCTCAA
ATCACCGCATAGTTTAACTGAAGATTTTCCAACCccaaaatatgattctt
caatttcTCCAAATACTGAATGCTCGAAATCGATCGTCACTTCAACCGTC
ACTGATTGCATTAGTGAGAAATTGTTTATTGATCAAGATGAAAATTTCTC
TAACACTTTCCATACAACATGTTCAGAATCGGTGGATACTGTTTCAAGTC
AACCAACTGATGATTATATAATTCCTCCCAACATAATTACCAAATCCTCG
CATCTTTACcccaaaattggtcaaaactcGAGCAAACAGATTGATGATTC
TCTAAATTCTTCCAACATTATTACATCAAAACATGGTTCCAATACGCTGT
TAGCTTCATCAATTCTTGGTAACAATCAACCCCTTCAAAATCCAAACTCA
GAAGACTCAAAACCGGATCTGCAAGTATCTACCAATCACAGAACAGATCT
GCAAATATCCAACAATCACAGAGAAGATCTGCAAATATCCACCAATCACA
GAGCAGATCTCCAAGAATCCACCAATCACAAAACAGATCTCCAAGAATCC
ACCAATCACAATGCAGATCTTCAAGAATCCACCAATCACAGAGCAGATCT
GCAAGAATCCACTAGTCACAAAGCAGACCTCCAAATATTCACCAATCACA
GAGCAGATCTGAAAAGATCCACCAATCACAAATCACTCAATGATAAAGTT
GATATCACAAACGAGAGACTTCAAAACGCATTTCGATACATGGACcgtta
tttcaaagaaaaaggaaTCCAAGATAAATTATTGAATCCTGAAATCAGAA
TCGAAGAATCGGCTGCTGACACTCAAACACCAGATTCATCGCATCGACCA
TCATTGGTTAAAAGCACCAAAACAGCCTTCAACACAATTACAAAAATTAA
TGAATCATTGACCAAAACAAACCCGTTCGAAGACCAATCTGATTCTTCAA
ATGAAGCTAATACgaacaaaaatttaaagtacGATGCATTTGAAATCGAT
ATAACAAGCCGTCTTCAACATAGTAGCAAGGAAGTGTCTGGCAATAACTA
TCGGCGCTTAAATTTCGACACCAGAAAAAATAGAGACACCTTTGATGACA
TCGCTGATGTTGCCAGTGTCCCAAACCATGGAAAACCCGATGAGTCATCT
GACAAAGCGATTGAAGAGAACCGATGTACCAGATCTGTGACCAACAACAA
ATTCGATCAACAAATGATTAACACGACagtaagttttgattttttgtttg
gtTTCCCATGGAAGCCTTAGAACGAGCTTTTTGTTATAGGTTAGCCTTAC
TTATTATATAACATGTAGTTCTACCTGTTTGCTTTCAAACGAATCGTAGC
TGATCAAGCAGAACAATTATATCACGTAAAAAAGATTAAGATTAGGCCTG
ATTAGGTTGGTGTTGGAGAGtcagattttaggtttttgaatgAGATATAT
ACCCAATCTAACCATCCGCAGTCAACTAAAAACAACAGCACATCTCAGCA
GAACCTTCTCCATAGGCGAAGCGAGACACCCTGCAAAAtgtatgagggag
tgcagacgtttatgacatattaattatcttttgataaaacaaagacaata
attacagtgtcgtaaaaaccgctctctcTATGCTCGCTACGCCTATGTCT
CCAAACATGCAGACCTTTCAcaattccatcttctttctttccATTCAATT
AGACGTACAAAGATTATGGCACACCTTTAATCATTGATAATGGTTCAGGG
ATGATCAAGATCGGACTGGCAAATAAAGAATCTCCAAATTATATCCCAAA
CATTGTTGGCACTGAGAATTATCAGGTATTTCAGTGTCTCATATTTTTAA
ATACAGCCCTGTTTCAGTGACACCaataaatttgatgaaaattaaaaagg
aaTAAAATAGCATGTCACCCCTTGTTTGAAACGTGTggttttcaaataat
aaaactATCATTAaagatttggcggatttcaggtAAATGCGCTAAATCCG
GCAacatttcttcctttaaggtacttacttctttttttctatttcagaaA
GTGATGGGTGGTAGTACTGAAGATCCTTCATCCAACGAACGAATGGTTGG
ATGGAAAGCAGACCAGTATCGTGGTATACTAAAGTTACGGTATCCGATGC
AAAATGGTGTCATTGATGATTGGGATGCCATGATTGATGTAAGGAAAGTT
CCATTTAATTTGAAgtcccgaaggggctagagatgaatctttaacctttt
gtcaagcaagaaaaagcgaAGCCTTGCTTTTTACACGGGCCATGTGCTCT
GGAAGTTAAATAAGTAGTTTAATTTTCCATCCCGAAGTTTCGGGGCTTTC
CagctttgaaatcaatgcaATTTTCTCTTCCATCTTCGAAATAACTCTAA
GAAACTTAACATGTTTCCTACAAACTACGAGCATACTTGTAGTAGCGGAA
GAATCACGAGCTGTCATCTTGaagatgaaattatttttttaaattcactt
gagacagtaaaggcggaggagaattgctcaaaaattaTCATTAACACCTT
TCGATTTACCGTAGCCCTTCACTACCGCAAATTTGACTTTTCTGATTAAT
ATCGTACGTTTTCTTTCACTCATTTACGAAGAAACTACAGGCTTGGGGAc
atgagaagtttttttcgcgttggtgcaatggaACATGCTTCATCCCACAA
ACCTGAAatgctttctcgtgtctccaccccatttttctttcaataacatt
tgtgcttctctcacttttgtccctaggacaatggagcaaaatttattcga
atcaattttgctccattgtcccagaaacaaaatcagcgtgtcttttgggt
acttccctcactttttgtcccatgaaacaagaaaagaaaccatgagacac
gcacttctttttttttattgtgttGGTGGCATGGAGCATGTTgaattgca
ccaacgcgaaaaaaagctatttttcatttttaggtaTGGACTTATTCTAT
TGAGGAGCAACTGGAAATTAACTCTTCTGATCACCCCATCTTGATAACAG
AGAATGTATTATCTCCCAAACATCATCGAGAACGTATGATGGAGATAATG
ATGGAAACATTTGAAATACCTGCGTACTACTCTACTCAACAAGGTGTCAT
GACACTTTATAGTGCTGGTCGAGTTTCAGGTAAGATTTCAATATATTGTC
GCCAATATGCGAAAAAACTAATCGGCGGTAGAAACTCTTACCGGCTGTAA
actttttcggcaaaaaaaaaaccgcttgtgaattttcttcggcttcgGGC
TGATTTCTTAGATAGTTATTTGTCTTAGATGATAGCATAGTCTATGTTTA
TATTGCTAATAAGAAATTTGTGTTCGACTTTTTAGGAATCGTTCTCGACA
GTGGAGATACATTATCACAAATCGTTCCTGTTTATGAGGGGTATGGAATC
AAGCATGCAACCGAGGCTATTCAAATTGGTGGGCGTGACGTCACAGATTA
TTTACGAACATTAATCACGCGGAAAGGCCGTTCTATGCCGACGTCAGCAG
AATTTGAGATCGTGAAAAAGATGAAAGaagaattttgttttgtgaAGAAT
CACGAGGAGGATAAGATGAAGA

Coding sequence (CDS) from alignment at sc0000061:993413..999834+

>TCONS_00005871 ID=TCONS_00005871|Name=TCONS_00005871|organism=Clytia hemisphaerica|type=CDS|length=4671bp|location=Sequence derived from alignment at sc0000061:993413..999834+ (Clytia hemisphaerica)
GTTAAGCGTGAAAGCAGAGATGCTTGTGATATACACCAGCATCAATTTAT
CGGTGACAAATATTATAGAGATGGAATGGAAGTTCTCCAGACTCCTACTT
TGAGTGATTCTGATATCAATGGGAAATACGAGCAAGAGCCTCCTGAACAA
CAAACTACCAAATATAACCTTAGAGATGAATTTTCTCCAAAAGTCGCATG
CTGCAAACCAGAAAAATCTTCACACTTGAAAGACGATCATGTTTCCATCA
AAAGCCATTGCAAAACGAAGTATTCATTGATAAAAAACAATACACACGAT
CTTAATGAGAATTTACCAAGACAGACCAGTGATTCTCCAGATTCTTCAAT
CGAAACTTCAATAACACCACAAGACAGTGGAGATACAGTCAAAAATCTGA
GAATGATCACACTTAATCTGAAGATAAGTAAGGACGATCATGATAGTGTC
GTTTTACCTGACTACATTAGAAAGTCACCAGATCCTCAAAACCGACCTGC
CATATCATATAAAGTCTCTGGTGAAAATTTTCATGAGGAATTATTCGTTC
TTTACGATTGTCGTGAAGTTAACAACAATGTTAGTGGTAACGAGTGTCAT
GATAGCTTTGACGATGATAGCTTTGGTAATTCACCAAAAGATAGCGAAAA
TCATCAAGGTGCAGAACCATCAAGTAAAGATAAAGAAACTGACAAACATC
CTTCTGAAAGTCAGCATGACGAGTCACCAAAAGGTTCGCTCAAAAATGGA
AATTCCCTATTTGACACTACCCAGAACTGCAAAACGACTTTAGAGGGAGA
TCTCCAGGATAATGTAGACGGATTGCAGGAGCATTCCCTGAGTAATAATG
GTCGATTTTCTGGTGATTTTGTGGTAGCCATATCAGATCTAGATATCGCA
TCTGATGAAAGTATTTCTTCAGATAACAACAATAACACTGATTCCCATCC
ACTAGACGTAGAAAACTCTTCTAAAAATGTACATCCACATGAAGGTGTTG
AACGTGAAAACCTCCCTTTCGAAgattgtactttttgttttcttcaaact
ttaTCCGAAAGCAAGATGGGTGGATTTACATGCTTAAATGAAATCGATGG
AAAAGAAAATCGTGGTCAAACTGGATctgttaaaaacaaaacattcacCA
GTGATATCGATCTCAGTGAATCTGACCACTCCAGCAGTTCAAAATTCACC
GACAGTGAGAGCTTGTTAAGAACGTTGAATGCacaaatagaaaatttgaa
tacaGCTCAAAAGACGTTGCAAAATGTCGAGAATGCAAAGAGAGATATAG
ATGAGTTTACCAAGCTATGTCGAGAGTCCTTATCAAAGATGAACAAAACT
ACAGAAGAGAATCCGTCTGAAAGAATAAGCAAAGTTGGGGAAGATAGTTC
AAACACTGATGGAATTGTAAAGACGGACAAGCAGCAACAAATCGTTCAAC
AGAGAAATGCTGAAACTGAAATAAATCAAAGCATTTCAAATCAAGTTGTT
AAGATAGATTCGACTTCAAAAGATAGCAATTCGGAAGCAGAAGTTAACAA
CTTTCAACTACGAAATAGCCAATTTGAACCAAATCAAAACGATCCTCATT
ATGGTAGCGAAATTTATTCCATTTCAAGAGATACCATTACAGAAGATATG
GAAACTAAAGCAAGATCAGCATTGATACCAGTATCTTACGAGTCTTTACC
ATCGATGTATAGGGACGATGATCTCTTGGGACGTGACGAAAATAATATTG
GAAAAACAGAACCTTATCCAGAATTTAATACAACCAATTCTGAGGAAAAT
CTAAAAGCGAAAAATCCATTCCAGAAGAGCAGTTCTTTTGATGTATTGAG
TTCTGAGACAGACAATCCAACAGATTTATTCAACCTTCGGAAAAGCAACT
CACTAGATTTATTAAATACCGACAAAAGCAGTTCACTGGATTTGTTTAGT
AAGGAAGATGCGTTCGATTCTACTTATGACTCATTGAAGAACAATCCCTT
CCAGAAAGATATGTTTGATAAATATTTGGAACAATTCGATCCATCTGTAA
TCACCAGTAATGGAGTTACCATGAATGATGAGGATACTAATGATGATTTG
GACGATATGACATTCTCACATGGCGATGGTTTAGATGATGATTGTCTTGA
AATGTTGCCAGATGATTCTCAATATGAACCAATCATTGAAAACATTGGCA
ACGATCTTTCTAGACCAGAAGAAACTGAAGATTTCAATACCAAGAACCAT
GTTGGTAATGTTGAAGAAGATGATGGAATCAACGAAGATTCTTCTCTTAA
TCAAAGAAAAACAGCTgaggatgaaattttcaatcatcaatcaaataatg
tGAACCATGTTTGGAATGCAGAAGAAGCTGATGGAATCGACATCTTTGGC
AACGGAGATTCTTCTGTTAAACAAGGAGAAACAACCACAGATGAATATTC
AAATCACGAGGAAACAGCCAAGGATGGAAATTCAAATCAAGAGGAAACAG
CTAGGGATGAAACTTTCAATCGACTATCAACAAATGAGGATCTTGCTGGT
ATTTTAAAAGAAACTGGTGGAATGAACACCTCCGGTAATGAATATTTTAC
AATGAAAAGTGGTAGAACTTTTAGGAATCAAGGAATAACAAACGATATCA
GAGCTGATCAAAATCAACGGGACATTTTTGGCATGAATGATGAATATTCA
TTTACCAAAAAAACCACAGACTATAATCATCTTCGTTTAGATCTCAAATC
ACCGCATAGTTTAACTGAAGATTTTCCAACCccaaaatatgattcttcaa
tttcTCCAAATACTGAATGCTCGAAATCGATCGTCACTTCAACCGTCACT
GATTGCATTAGTGAGAAATTGTTTATTGATCAAGATGAAAATTTCTCTAA
CACTTTCCATACAACATGTTCAGAATCGGTGGATACTGTTTCAAGTCAAC
CAACTGATGATTATATAATTCCTCCCAACATAATTACCAAATCCTCGCAT
CTTTACcccaaaattggtcaaaactcGAGCAAACAGATTGATGATTCTCT
AAATTCTTCCAACATTATTACATCAAAACATGGTTCCAATACGCTGTTAG
CTTCATCAATTCTTGGTAACAATCAACCCCTTCAAAATCCAAACTCAGAA
GACTCAAAACCGGATCTGCAAGTATCTACCAATCACAGAACAGATCTGCA
AATATCCAACAATCACAGAGAAGATCTGCAAATATCCACCAATCACAGAG
CAGATCTCCAAGAATCCACCAATCACAAAACAGATCTCCAAGAATCCACC
AATCACAATGCAGATCTTCAAGAATCCACCAATCACAGAGCAGATCTGCA
AGAATCCACTAGTCACAAAGCAGACCTCCAAATATTCACCAATCACAGAG
CAGATCTGAAAAGATCCACCAATCACAAATCACTCAATGATAAAGTTGAT
ATCACAAACGAGAGACTTCAAAACGCATTTCGATACATGGACcgttattt
caaagaaaaaggaaTCCAAGATAAATTATTGAATCCTGAAATCAGAATCG
AAGAATCGGCTGCTGACACTCAAACACCAGATTCATCGCATCGACCATCA
TTGGTTAAAAGCACCAAAACAGCCTTCAACACAATTACAAAAATTAATGA
ATCATTGACCAAAACAAACCCGTTCGAAGACCAATCTGATTCTTCAAATG
AAGCTAATACgaacaaaaatttaaagtacGATGCATTTGAAATCGATATA
ACAAGCCGTCTTCAACATAGTAGCAAGGAAGTGTCTGGCAATAACTATCG
GCGCTTAAATTTCGACACCAGAAAAAATAGAGACACCTTTGATGACATCG
CTGATGTTGCCAGTGTCCCAAACCATGGAAAACCCGATGAGTCATCTGAC
AAAGCGATTGAAGAGAACCGATGTACCAGATCTGTGACCAACAACAAATT
CGATCAACAAATGATTAACACGACaACGTACAAAGATTATGGCACACCTT
TAATCATTGATAATGGTTCAGGGATGATCAAGATCGGACTGGCAAATAAA
GAATCTCCAAATTATATCCCAAACATTGTTGGCACTGAGAATTATCAGaa
AGTGATGGGTGGTAGTACTGAAGATCCTTCATCCAACGAACGAATGGTTG
GATGGAAAGCAGACCAGTATCGTGGTATACTAAAGTTACGGTATCCGATG
CAAAATGGTGTCATTGATGATTGGGATGCCATGATTGATgtaTGGACTTA
TTCTATTGAGGAGCAACTGGAAATTAACTCTTCTGATCACCCCATCTTGA
TAACAGAGAATGTATTATCTCCCAAACATCATCGAGAACGTATGATGGAG
ATAATGATGGAAACATTTGAAATACCTGCGTACTACTCTACTCAACAAGG
TGTCATGACACTTTATAGTGCTGGTCGAGTTTCAGGAATCGTTCTCGACA
GTGGAGATACATTATCACAAATCGTTCCTGTTTATGAGGGGTATGGAATC
AAGCATGCAACCGAGGCTATTCAAATTGGTGGGCGTGACGTCACAGATTA
TTTACGAACATTAATCACGCGGAAAGGCCGTTCTATGCCGACGTCAGCAG
AATTTGAGATCGTGAAAAAGATGAAAGaagaattttgttttgtgaAGAAT
CACGAGGAGGATAAGATGAAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003353XLOC_003353Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005871-proteinTCONS_00005871-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005871-exon-sc0000061-1491911889:993413..994555TCONS_00005871-exon-sc0000061-1491911889:993413..994555Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:993413..994555TCONS_00005871-exon-sc0000061-1510915933:993413..994555Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:993413..994555TCONS_00005871-exon-sc0000061-1575043694:993413..994555Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1491911889:994608..997440TCONS_00005871-exon-sc0000061-1491911889:994608..997440Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:994608..997440TCONS_00005871-exon-sc0000061-1510915933:994608..997440Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:994608..997440TCONS_00005871-exon-sc0000061-1575043694:994608..997440Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1491911889:997915..998037TCONS_00005871-exon-sc0000061-1491911889:997915..998037Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:997915..998037TCONS_00005871-exon-sc0000061-1510915933:997915..998037Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:997915..998037TCONS_00005871-exon-sc0000061-1575043694:997915..998037Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1491911889:998260..998400TCONS_00005871-exon-sc0000061-1491911889:998260..998400Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:998260..998400TCONS_00005871-exon-sc0000061-1510915933:998260..998400Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:998260..998400TCONS_00005871-exon-sc0000061-1575043694:998260..998400Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1491911889:999196..999391TCONS_00005871-exon-sc0000061-1491911889:999196..999391Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:999196..999391TCONS_00005871-exon-sc0000061-1510915933:999196..999391Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:999196..999391TCONS_00005871-exon-sc0000061-1575043694:999196..999391Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1491911889:999598..999834TCONS_00005871-exon-sc0000061-1491911889:999598..999834Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1510915933:999598..999834TCONS_00005871-exon-sc0000061-1510915933:999598..999834Clytia hemisphaericaexon
TCONS_00005871-exon-sc0000061-1575043694:999598..999834TCONS_00005871-exon-sc0000061-1575043694:999598..999834Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:993413..999834 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.06497	1.10051	0.571033	0.563438	0.696649	0.592848	2.64641	2.69664	1.05816	1.00494	1.18384	1.22798	1.05713	1.08137	0.0334	0.0179594	1.21113	1.30252	2.28951	2.5019	2.19766	1.79768	0.77456	1.08528	2.68786	3.49547	0.0271521	0.013926	0.167601	0.0564082
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR004000Actin
Blast
[Close]
BLAST of TCONS_00005871 vs. Swiss-Prot (Human)
Match: ACTY (Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=1)

HSP 1 Score: 193.741 bits (491), Expect = 5.160e-53
Identity = 95/218 (43.58%), Postives = 148/218 (67.89%), Query Frame = 2 
Query: 3998 PLIIDNGSGMIKIGLANKESPNY-IPNIVGTENYQKVMGGSTEDPSSNERMVGWKADQYRGILKLRYPMQNGVIDDWDAMIDVWTYSI-EEQLEINSSDHPILITENVLSPKHHXXXXXXXXXXXXXXPAYYSTQQGVMTLYSAGRVSGIVLDSGDTLSQIVPVYEGYGIKHATEAIQIGGRDVTDYLRTLITRKGRSMPTSAEFEIVKKMKEEFCFV 4645
            P++IDNGSG+IK G A  + P Y  PN VG   + +VM G+ E     +  +G KA+++RG+L +RYPM++GV+ DW+ M  +W Y   ++QL+  S +HP+L+TE  L+P  +RE+  E+  ETF +PA + + Q V++LY+ GR +G+VLDSGD ++  VP+YEG+ + H+   + I GRDV+ YLR L+ ++G    TSAEFE+V+ +KE  C++
Sbjct:   11 PVVIDNGSGVIKAGFAGDQIPKYCFPNYVGRPKHMRVMAGALE----GDLFIGPKAEEHRGLLTIRYPMEHGVVRDWNDMERIWQYVYSKDQLQTFSEEHPVLLTEAPLNPSKNREKAAEVFFETFNVPALFISMQAVLSLYATGRTTGVVLDSGDGVTHAVPIYEGFAMPHSIMRVDIAGRDVSRYLRLLLRKEGVDFHTSAEFEVVRTIKERACYL 224
The following BLAST results are available for this feature:
BLAST of TCONS_00005871 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ACTY5.160e-5343.58Beta-centractin OS=Homo sapiens GN=ACTR1B PE=1 SV=... [more]
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