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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005895 ID=TCONS_00005895|Name=TCONS_00005895|organism=Clytia hemisphaerica|type=transcript|length=2718bp
ATTCACAAAAATCCATCACATACCTCCCATCATCCAAAACTAACCCATCT
CTATCTACACCTTCTATCGCTAGCAAACAAAAAGTGGTGATGAAGAAAAG
CTTTATGAGCGACGCTTTAAGTTCACTCAAAAGTACTGGGTGCCCACCCA
TTAATAGTGCTTATACTACAATCAACCCTACGCTTTTGAGAGAAGCTTTA
AAGGATGATAAAGCACAATATGAGAAAGACTTTTCATTAACGAAAGATGT
GAAAAGCAATGTCGGTGAAAAACGAAAATCGATTGTTATTGACGATGATG
AAGACActaaagtgattaacatccagccttcaaataaatcaaaacgCTCN
ATGTAAAATAGAGTTACTGGCTAACACTCCTAGTAATGCTACCAACTTGT
TGAAAATTCATTTAATGGTGGAGCATAGGTACCAAAAGAAACGATCAGTT
ATAGAAGCTTTAAAACAAGAACGCATCATAATCTGCAAACGAAAACATCA
CGGTGAACATATCATAATGCCATGTGAAGAATGTAGAATTTGGTTATGCT
GGGATTCCCTTATCGACCACCTTCAGTTAAAGAAACATAACATGGATCGA
TTAGGTGCCATTGATTTCATGAtcacattaaaaaagaaaatttggggTCA
AAATGCTCCTAAAGCCAGAGACTTAGACGATTTTGGACGGCGTCTCCCAG
CTGTGAATGAACAAAGTTCGTGTAAAGACAGCCAAAGAGCAGATATTTCC
ACGAATAATGCCCAGAAAGATTCTAATTCACAAAAATCCATCACATACCT
CCCATCATCCAAAACTAACCCATCTCTATCTACACCTTCTATCGCTAGCA
AACCAATTGTGGCGATGAAGAAAAGCTTTATGAGCGACGCTTTAAGTTCA
CTCAAAAGTACTGGGTGCCCACCTATTAATAGTGCTTATACTACAATCAA
CCCTACGCTTTTGAGAGAAGCTTTAAAGGATGATAAAGCACAATATGAGA
AAGACTTTTCATTAACGAAAGATGTGAAAAGCAATGTCGGTGAAAAACGA
AAATCGATTGTTATTGACGATGATGAAGACActaaagtgattaacatcca
gccttcaaataaatcaaaacgCTCTGAGCCTTCAAAGAGTAATTCCCAAA
CACTCGAGAACAATAGTCTATCTACAGACTACAAAATTTCAGCTCCTGCT
GTTGATGCTGAATATGAGAGGGAGAAAAACATTAGCAATAAAGAAAGAAT
TGATAATAAAGCTAGTCTCCGTGTGGTTATAACTGATGTAAAAGAAGTTA
ATATACAAAAAGTTAAGGTGGCTGCAAGTTGCCCTGTATGTGGAAgagaa
tttaaaatgaaacaaatgaaactaATTAGCCATCATTTGGTAAGAAAACA
TGGTTTTAAGGTACGACAAGCTCTTATGGAGGAGGTCAAGCAGACACGAT
TGGCTAAGTGTATGAAACAGCACGGAGGAAAACATATTCTTCTGCCATGC
GCAGTCGATCAATGCGACATGTGGTTTTGTAGCGATATGAGTTTTGAACA
ACATATGAGGATGAAACATTGTATGTCTATGCCTGATGTTTATAAAGCGA
GAGACGAGTTAATTAAAAAACATTGGGATGGTAAAAAAGTACTCGTCAAA
GAGATCTTATCAGGAATTAGTACCAACAATAAAAGTACATTAAATTCTAA
CGCCAAATCCAGTATGGAAGATTCAATGATATCTAAATCCAACACTGAAA
TCAGTACGCGAAGACCTACTGAAAAGACAACAAATACATCCAAGTCTTCA
TCTTCAACCAGTGCCGGTGAAGAAATAACTACTGAAGTTACAAGGACATC
TAAGTCTAACGCTGGAATGAGTGAACACATCACCACGGAACATACAAAGA
CATCTAAATGTAACACTGGAAACATTATCACGGATTCTttcatgaaagaa
aaaacacaaattgagaaaaaaaaataacactGATGCTAAGCAGGAACAAC
ATTCAACTCAAAAACCAACAGTTTATGGAGGAAAAGCAAACCCTATCACT
ATTGATATTGatttaattgaaaatgaaaCTCTCTCTCGAAATAAAATGAA
gtcaaaaaccaaagaaaatatcAAGGACATCGAAAATAAGGAATTATTTG
TGCTCAAAACTCCGTCTAACTCAGTTGCTACGGAAATTAAACTCGATATA
TTTACGAAAACAACAAGCGAAGATCTTTCAAAATTGTCTGCGCCTTCTTT
CGAAGCTGAGAAAGAAGTTGGTAAAGGTAATAAAGGTTTTGTACTAAACA
CTAATGATGAAAGTGCTAGCATTATATCTAAGTCGTTCGTTGGATCAGAA
GCTTTGGAAACGGAATGTGATAGAAATTCTACCACGGATGTAAAAGAGAG
TTTTCTGGAGACTGTGATCGCGGAGGAAAAAGAACTAAAATCGAGCACAC
GGGAAAATGCCAGTGATCAAATAAAATCAACAGAAAATGGCGACGCTTTA
TTTGGGATTTCATGTGAGAAAGTTTCTTTAAAAGCAAAACGTGACGGAGA
TATCATTATGGTTAATCAGAGTCGTCAAGAAATACCGGAGCCTTCGATTA
AAGAAGAGGGAGAAACAAGTGTCACCAATCTCTCGTGTAAAGACTCGTTT
AAAGTTACAACGCAACCTTGTCAAACGCTGGAGGAATTGGTTCAAGATAT
TCAAAACATCACAACAAA Run BLAST on NCBI protein sequence of TCONS_00005895-protein >TCONS_00005895-protein ID=TCONS_00005895-protein|Name=TCONS_00005895-protein|organism=Clytia hemisphaerica|type=polypeptide|length=520bp
MVEHRYQKKRSVIEALKQERIIICKRKHHGEHIIMPCEECRIWLCWDSLI
DHLQLKKHNMDRLGAIDFMITLKKKIWGQNAPKARDLDDFGRRLPAVNEQ
SSCKDSQRADISTNNAQKDSNSQKSITYLPSSKTNPSLSTPSIASKPIVA
MKKSFMSDALSSLKSTGCPPINSAYTTINPTLLREALKDDKAQYEKDFSL
TKDVKSNVGEKRKSIVIDDDEDTKVINIQPSNKSKRSEPSKSNSQTLENN
SLSTDYKISAPAVDAEYEREKNISNKERIDNKASLRVVITDVKEVNIQKV
KVAASCPVCGREFKMKQMKLISHHLVRKHGFKVRQALMEEVKQTRLAKCM
KQHGGKHILLPCAVDQCDMWFCSDMSFEQHMRMKHCMSMPDVYKARDELI
KKHWDGKKVLVKEILSGISTNNKSTLNSNAKSSMEDSMISKSNTEISTRR
PTEKTTNTSKSSSSTSAGEEITTEVTRTSKSNAGMSEHITTEHTKTSKCN
TGNIITDSFMKEKTQIEKKK Run BLAST on NCBI transcript from alignment at sc0000061:186471..190080- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00005895 ID=TCONS_00005895|Name=TCONS_00005895|organism=Clytia hemisphaerica|type=transcript|length=3610bp|location=Sequence derived from alignment at sc0000061:186471..190080- (Clytia hemisphaerica)
ATTCACAAAAATCCATCACATACCTCCCATCATCCAAAACTAACCCATCT
CTATCTACACCTTCTATCGCTAGCAAACAAAAAGTGGTGATGAAGAAAAG
CTTTATGAGCGACGCTTTAAGTTCACTCAAAAGTACTGGGTGCCCACCCA
TTAATAGTGCTTATACTACAATCAACCCTACGCTTTTGAGAGAAGCTTTA
AAGGATGATAAAGCACAATATGAGAAAGACTTTTCATTAACGAAAGATGT
GAAAAGCAATGTCGGTGAAAAACGAAAATCGATTGTTATTGACGATGATG
AAGACACTAAAGTGATTAACATCCAGCCTTCAAATAAATCAAAACGCTCN
ATGTAAAATAGAGTTACTGGCTAACACTCCTAGTAATGCTACCAACTTGT
TGAAAATTCATTTAATGGTGGAGCATAGGTAGGTAGTAATACCAACGTTT
TAGTATGATTTAAATTTATCTCGAAATACTTTGATTTGTGCATGATTTTC
TTTTTCTCCAGTCCATAGTTGCGCCTCTTCGATTAGGAAATACTTACGCA
AATTATTGAAAAATTNGAACAATAGTCTATCTACAGACTACAAAATTTCA
GCTCCTGCTGTTGATGCTGAATATGAGAGGGAGAAAAACAGTAGCAATAA
AGCAAGAATTGATAATAAAGCTAGTCTCCGTGTGGTTATAACTGATGTAA
AAGAAGTTAATATGCAAAAAGTTAAGGTGGCTGNTCAGATTTGTAGAACG
GCACCTGGAGTGTTTATTTTCTCGCTGATTTTCTCGCTAAGAAGAAGAAT
TATTAATGCATTTAATGATTAAACAGAAAAACGGTTTTTATTCTTAATGG
AAGAGAATAATTCATTTGTCCTTCTTTCAATGTTCAGGTACCAAAAGAAA
CGATCAGTTATAGAAGCTTTAAAACAAGAACGCATCATAATCTGCAAACG
AAAACATCACGGTGAACATATCATAATGCCATGTGAAGAATGTAGAATTT
GGTTATGCTGGGATTCCCTTATCGACCACCTTCAGTTAAAGAAACATAAC
ATGGATCGATTAGGTGCCATTGATTTCATGATCACATTAAAAAAGAAAAT
TTGGGGTCAAAATGCTCCTAAAGCCAGAGACTTAGACGATTTTGGACGGC
GTCTCCCAGCTGTGAATGAACAAAGTTCGTGTAAAGACAGCCAAAGAGCA
GATATTTCCACGAATAATGCCCAGAAAGATTCTAATTCACAAAAATCCAT
CACATACCTCCCATCATCCAAAACTAACCCATCTCTATCTACACCTTCTA
TCGCTAGCAAACCAATTGTGGCGATGAAGAAAAGCTTTATGAGCGACGCT
TTAAGTTCACTCAAAAGTACTGGGTGCCCACCTATTAATAGTGCTTATAC
TACAATCAACCCTACGCTTTTGAGAGAAGCTTTAAAGGATGATAAAGCAC
AATATGAGAAAGACTTTTCATTAACGAAAGATGTGAAAAGCAATGTCGGT
GAAAAACGAAAATCGATTGTTATTGACGATGATGAAGACACTAAAGTGAT
TAACATCCAGCCTTCAAATAAATCAAAACGCTCTGAGCCTTCAAAGAGTA
ATTCCCAAACACTCGAGAACAATAGTCTATCTACAGACTACAAAATTTCA
GCTCCTGCTGTTGATGCTGAATATGAGAGGGAGAAAAACATTAGCAATAA
AGAAAGAATTGATAATAAAGCTAGTCTCCGTGTGGTTATAACTGATGTAA
AAGAAGTTAATATACAAAAAGTTAAGGTGGCTGCAAGTTGCCCTGTATGT
GGAAGAGAATTTAAAATGAAACAAATGAAACTAATTAGCCATCATTTGGT
AAGAAAACATGGTTTTAAGGTACGACAAGCTCTTATGGAGGAGGTNAATT
TAAAATGAAACAAATGAAACTAATTAGCCATCATTTGGTAAGAAAACATG
GTTTTAAGTTACGACAAGCTCTTATGGAGGAGGTCAAGCAGACACGATTG
GCTAAGTGTATGAAACAGCACGGAGGAAAACATATTCTTCTGCCATGCGC
AGTCGATCAATGCGACATGTGGTTTTGTAGCGATATGAGTTTTGAACAAC
ATATGAGGATGAAACATTGTATGTCTATGCCTGATGTTTATAAAGCGAGA
GACGAGTTAATTAAAAAACATTGGGATGGTAAAAAAGTACTCGTCAAAGA
GATCTTATCAGGAATTAGTACCAACAATAAAAGTACATTAAATTCTAACG
CCAAATCCAGTATGGAAGATTCAATGATATCTAAATCCAACACTGAAATC
AGTACGCGAAGACCTACTGAAAAGACAACAAATACATCCAAGTCTTCATC
TTCAACCAGTGCCGGTGAAGAAATAACTACTGAAGTTACAAGGACATCTA
AGTCTAACGCTGGAATGAGTGAACACATCACCACGGAACATACAAAGACA
TCTAAATGTAACACTGGAAACATTATCACGGATTCTTTCATGAAAGAAAA
AACACAAATTGAGAAAAAAAAATAACACTGATGCTAAGCAGGAACAACAT
TCAACTCAAAAACCAACAGTTTATGGAGGAAAAGCAAACCCTATCACTAT
TGATATTGATTTAATTGAAAATGAAACTCTCTCTCGAAATAAAATGAAGT
CAAAAACCAAAGAAAATATCAAGGACATCGAAAATAAGGAATTATTTGTG
CTCAAAACTCCGTCTAACTCAGTTGCTACGGAAATTAAACTCGATATATT
TACGAAAACAACAAGCGAAGATCTTTCAAAATTGTCTGCGCCTTCTTTCG
AAGCTGAGAAAGAAGTTGGTAAAGGTAATAAAGGTTTTGTACTAAACACT
AATGATGAAAGTGCTAGCATTATATCTAAGTCGTTCGTTGGATCAGAAGC
TTTGGAAACGGAATGTGATAGAAATTCTACCACGGATGTAAAAGAGAGTT
TTCTGGAGACTGTGATCGCGGAGGAAAAAGAACTAAAATCGAGCACACGG
GAAAATGCCAGTGATCAAATAAAATCAACAGAAAATGGCGACGCTTTATT
TGGGATTTCATGTGAGAAAGTTTCTTTAAAAGCAAAACGTGACGGAGATA
TCATTATGGTTAATCAGAGTCGTCAAGAAATACCGGAGCCTTCGATTAAA
GAAGAGGGAGAAACAAGTGTCACCAATCTCTCGTGTAAAGACTCGTTTAA
AGTTACAACGCAACCTTGTCAAACGCTGGAGGTATATAAAACTATTTACT
TGTTAGAAGAGATCCTCTTTACAATGTCCCATTGATCGATATTGTTTTCT
ATTTACTACCTGGGTAGGTTTAAAGAATATTTGTTTATGTTTTTAACAAT
CAGCATCAATCGCGATCGACTTCTGATATTGAGTGAAGGCTGATAAGGAA
GTAGAAAATGTAACGAGATTTCTAATTTTGTCATTGCTTTCAAATTGGCG
GATGGCTTTTGTTTCTGGGTCTTACATGGAAACAAAGTTCTACCTTTCAA
TAAGAAGAGATTTGTCAAAACTCATTCAAGAACTCATTTTCTTTACTTAA
GTAAATAAATTACCTTTTTACTCAGGAATTGGTTCAAGATATTCAAAACA
TCACAACAAA Coding sequence (CDS) from alignment at sc0000061:186471..190080- >TCONS_00005895 ID=TCONS_00005895|Name=TCONS_00005895|organism=Clytia hemisphaerica|type=CDS|length=1563bp|location=Sequence derived from alignment at sc0000061:186471..190080- (Clytia hemisphaerica)
ATGGTGGAGCATAGGTACCAAAAGAAACGATCAGTTATAGAAGCTTTAAA
ACAAGAACGCATCATAATCTGCAAACGAAAACATCACGGTGAACATATCA
TAATGCCATGTGAAGAATGTAGAATTTGGTTATGCTGGGATTCCCTTATC
GACCACCTTCAGTTAAAGAAACATAACATGGATCGATTAGGTGCCATTGA
TTTCATGATCACATTAAAAAAGAAAATTTGGGGTCAAAATGCTCCTAAAG
CCAGAGACTTAGACGATTTTGGACGGCGTCTCCCAGCTGTGAATGAACAA
AGTTCGTGTAAAGACAGCCAAAGAGCAGATATTTCCACGAATAATGCCCA
GAAAGATTCTAATTCACAAAAATCCATCACATACCTCCCATCATCCAAAA
CTAACCCATCTCTATCTACACCTTCTATCGCTAGCAAACCAATTGTGGCG
ATGAAGAAAAGCTTTATGAGCGACGCTTTAAGTTCACTCAAAAGTACTGG
GTGCCCACCTATTAATAGTGCTTATACTACAATCAACCCTACGCTTTTGA
GAGAAGCTTTAAAGGATGATAAAGCACAATATGAGAAAGACTTTTCATTA
ACGAAAGATGTGAAAAGCAATGTCGGTGAAAAACGAAAATCGATTGTTAT
TGACGATGATGAAGACACTAAAGTGATTAACATCCAGCCTTCAAATAAAT
CAAAACGCTCTGAGCCTTCAAAGAGTAATTCCCAAACACTCGAGAACAAT
AGTCTATCTACAGACTACAAAATTTCAGCTCCTGCTGTTGATGCTGAATA
TGAGAGGGAGAAAAACATTAGCAATAAAGAAAGAATTGATAATAAAGCTA
GTCTCCGTGTGGTTATAACTGATGTAAAAGAAGTTAATATACAAAAAGTT
AAGGTGGCTGCAAGTTGCCCTGTATGTGGAAGAGAATTTAAAATGAAACA
AATGAAACTAATTAGCCATCATTTGGTAAGAAAACATGGTTTTAAGGTAC
GACAAGCTCTTATGGAGGAGGTCAAGCAGACACGATTGGCTAAGTGTATG
AAACAGCACGGAGGAAAACATATTCTTCTGCCATGCGCAGTCGATCAATG
CGACATGTGGTTTTGTAGCGATATGAGTTTTGAACAACATATGAGGATGA
AACATTGTATGTCTATGCCTGATGTTTATAAAGCGAGAGACGAGTTAATT
AAAAAACATTGGGATGGTAAAAAAGTACTCGTCAAAGAGATCTTATCAGG
AATTAGTACCAACAATAAAAGTACATTAAATTCTAACGCCAAATCCAGTA
TGGAAGATTCAATGATATCTAAATCCAACACTGAAATCAGTACGCGAAGA
CCTACTGAAAAGACAACAAATACATCCAAGTCTTCATCTTCAACCAGTGC
CGGTGAAGAAATAACTACTGAAGTTACAAGGACATCTAAGTCTAACGCTG
GAATGAGTGAACACATCACCACGGAACATACAAAGACATCTAAATGTAAC
ACTGGAAACATTATCACGGATTCTTTCATGAAAGAAAAAACACAAATTGA
GAAAAAAAAATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00005895-exon-sc0000061-1575043694:189653..190080 | TCONS_00005895-exon-sc0000061-1575043694:189653..190080 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1575043694:188188..189193 | TCONS_00005895-exon-sc0000061-1575043694:188188..189193 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1575043694:186850..188098 | TCONS_00005895-exon-sc0000061-1575043694:186850..188098 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1575043694:186471..186505 | TCONS_00005895-exon-sc0000061-1575043694:186471..186505 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1510915933:189653..190080 | TCONS_00005895-exon-sc0000061-1510915933:189653..190080 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1510915933:188188..189193 | TCONS_00005895-exon-sc0000061-1510915933:188188..189193 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1510915933:186850..188098 | TCONS_00005895-exon-sc0000061-1510915933:186850..188098 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1510915933:186471..186505 | TCONS_00005895-exon-sc0000061-1510915933:186471..186505 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1491911889:189653..190080 | TCONS_00005895-exon-sc0000061-1491911889:189653..190080 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1491911889:188188..189193 | TCONS_00005895-exon-sc0000061-1491911889:188188..189193 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1491911889:186850..188098 | TCONS_00005895-exon-sc0000061-1491911889:186850..188098 | Clytia hemisphaerica | exon |
| TCONS_00005895-exon-sc0000061-1491911889:186471..186505 | TCONS_00005895-exon-sc0000061-1491911889:186471..186505 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000061 | supercontig | sc0000061:186471..190080 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
The following BLAST results are available for this feature:
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