TCONS_00005898 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00005898
Unique Name	TCONS_00005898
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1051

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at sc0000061:198564..203075-
coding sequence from alignment at sc0000061:198564..203075-

transcript sequence

>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=1051bp
CTAAGCCTGTAAGTTGTATATCTTATTTTCCTTTtagtttttgataaaaa
gattcAAGGATCAAGgaattataaaataataaaaatatggCTTGTATTTC
AACCAACGGATCAGATCTACTTGCAAtcagtttgaaaaataaactcgTCA
TCTTCAGGAATGACGAGACGATTCTCAGTTACACCCATACACCACCAGTA
AAACCCACAGACAAGGAAAAGAAAGAAGACAGCGAGGAGAAAAAAGAGAG
CAAAACAGCACAGCCAACACCTGCAACATCTTTTGATTGTCATCAATTTT
CCTCTAAAAGAAAATCAGAATGTCAATGTTACTTTGGAGCTGTCACTGAA
GATAAAAAACTACTAGTTTGGAATGTCGAAGCAACCAAATGTACTTTGCT
AATGACCTTAGAATTTCCAAAACGACCAACATCGCTGAAGTTTCTGAAGA
ATGAAGACTCTGTACTGGTTTCTGATAAATATGGGGATATCTACAAaGCT
TCCTTAACTTCTGAAGAGCAAACACCGAAACTCATCCTTGGTCATTTATC
CATGGTTCTTGATATTGAAATAATTGAAGAGGACAAATTCATCATCAGTG
CAGATCGTGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAAT
ATACATAATTATTGTCTAGGTCATAAAAATTTGGTATCTTTCATCGAGAA
CATTGGGAATAATAGACTACTTTCTATATCTGCAGATAAAACCATCAAAT
TATGGAACTACTACGATGGAAAGGAACTATCTTCTTTGGATATGAAAGAG
TGCACTGAAAAGGAGTTTGTACCAACGAAATTTGTGACGTGTGATAACTC
TGTCCTAGTTATTGGAGAACAGCTTCGAGGCGTTGTTCATTTAGAAATCA
ACGAAGACAACCTGAAATACATTCGACTGATTGAACTAGATATACAACCT
GTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATGTTATGTGCAAG
TCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAATGTAAGTTTTC
C

Run BLAST on NCBI

protein sequence of TCONS_00005898-protein

>TCONS_00005898-protein ID=TCONS_00005898-protein|Name=TCONS_00005898-protein|organism=Clytia hemisphaerica|type=polypeptide|length=321bp
MACISTNGSDLLAISLKNKLVIFRNDETILSYTHTPPVKPTDKEKKEDSE
EKKESKTAQPTPATSFDCHQFSSKRKSECQCYFGAVTEDKKLLVWNVEAT
KCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLI
LGHLSMVLDIEIIEEDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLV
SFIENIGNNRLLSISADKTIKLWNYYDGKELSSLDMKECTEKEFVPTKFV
TCDNSVLVIGEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVY
MLCASPDQPLKVFTKSNNVSF

Run BLAST on NCBI

transcript from alignment at sc0000061:198564..203075-

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=transcript|length=4512bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica)
CTAAGCCTGTAAGTTGTATATCTTATTTTCCTTTTAGTTTTTGATAAAAA
GATTCAAGGATCAAGGAATTATAAAATAATAAAAATATGGCTTGTATTTC
AACCAACGGATCAGATCTACTTGCAATCAGTTTGAAAAATAAACTCGTCA
TCTTCAGGTATTGACTTTATACACTTTGTGGTTTTCAATAGTTTCATTGA
CAACCCATAAGTCTTACTTTGTTTGGTCTCTCAGATGACCTATAATAAAA
TAAGAATATGGATTACCTATTCGCCCAGGGAAAATGTGCAAGACCTACTA
CATACTGTCGTTAATCCAGTTAAAATTTACGTCTTGGTACGACCAGATGA
ATAATAAAATTCTACCTAAAGATTCCTTATCCATAGTCTGAAACCAAAAC
CTGGATCATGAAATAAATATGTGATTCCGATTACATGCTTTATGTGGCTA
TCCCTTTAAAACCGACTTCAAAAATCTATATTTCAGGAATGACGAGACGA
TTCTCAGTTACACCCATACACCACCAGTAAAACCCACAGACAAGGAAAAG
AAAGAAGACAGCGAGGAGAAAAAAGAGAGCAAAACAGCACAGCCAACACC
TGCAACATCTTTTGATTGTCATCAATTTTCCTCTAAAAGAAAATCAGAAT
GTCAATGTTACTTTGGAGCTGTCACTGAAGATAAAAAACTACTAGTTTGG
AATGTCGAAGCAACCAAATGTACTTTGCTAATGACCTTGTGAGTAAAATT
ATTTGGGTTTTGTTACTGCATATTGCTGGAGTATGTATACTATGATCTAT
GTATACTAATTCTGTAATCATGGCTGGAACCCCTCCCCCCTGGCCTGAGG
GGGGGGGCTAAAAGGTCGAGCAGCAGTTGGTACCTGATTTTAGCCTGTGG
CTAGGGGGGGCTAACCATGTTAGGGGTCACCTAAATTTTTTCAGATGGAC
CTGGGGGCTAGATTTTATGTTTGGTGATTGAATTTATAAGCAGCCTACCA
GACCATAGGTTGGAACTTTCTCATCTTATATTTTAATCTAAGCAATAATG
CTCAAAAACTGACAATTTGGTATCTAATATATTATTTGCAGTGCCGTCAG
TGCCATAGCAACTGGGGGGGACCAATAATTTTTCAAAATGGTTATCTTGC
AAAATGCAAAGTTTTTCTTTTTTAATTTGTCATAATTGTCTTATAAGTGC
ATGTTTTGAGTGCATTTTCAAGCAATCTAGAGCTCAAATTTTCAAAATTT
TCCTCCTCAGCTCAAACCATGGTTGGCCCTCGCGGTGTCACTAAACTTCA
GCCCCCTTAATATGAAAATGCTTCCTACTGCACTGATCTGTAAAAATTCT
TTAATCCTGATGCATTTACTTAGATAAAAATCTGTCTAGCAAGGGATCTG
CACCCCTTACTTGAACCTTCAGTACTTAGCTTATCTCTTATTTCTTAGGG
CATTTATTCTATTTAGCAATAAGCTAAACTAACTGTTGTATTTGTTTGAT
TGTTTAAAAAGGATTTTCGAAAAAATTTGACGTGTCATTGGCTTAGAGGT
CACCTAAAATATTTGGCGACCAGGGGTTACCTAAATCTTAGGGGTCACCT
GAATTCTTAGGGGGCACCTAAAACCTGCTGCCAAGCCATGTGTAATGTTT
CTAAAAGCCTCTTTTCTTTTGTAGAGAATTTCCAAAACGACCAACATCGC
TGAAGTTTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAATATGGG
GATATCTACAAGTAAGAAGCCGTCCACATGATTGTTTTGTAAACTTTTCT
CCTAACTTTGTCCTTTCATTGTGCTATTACTATAAATCAATATCCATTGA
GATGGATGAAACTTAAGTTGGTAGCAAGACAAGACCCCGACGAGGCTGAG
TGAAACTCACTCATTACAATTTTTAGACGGCTTTTCAGAATAAAGTGAAT
GCAGGGGTGGAGTGCCGCACTTATTCACTAATCTCAACAGCTTTCCGCTA
CTAGCCGTCTTGACCAGATTTCCCAATCTAATCTAATCTACTACTCTTCT
CTTGCGTAATGTTTCATTTTTATTAGAGCTTCCTTAACTTCTGAAGAGCA
AACACCGAAACTCATCCTTGGTCATTTATCCATGGTTCTTGATATTGTAA
GTTTGTGCTTTGAGATTTTAGCCTTCGATAGATATAGATAATAATCTTCA
CTATTCAGAGAATTATATTAAGTAGGTTTATTGACCTCAACCAACCTAAT
AATGAGATATTATTATTATCCAATCTTCGTCTTTCATCCAGTCGTCAGAA
AGGATCGGTGTTTTTGACGGTCTTTGTTCTAAGTTTTCGAACTAGGCGAA
GGCTTGTTCTAGGGCTTCCTTACACGCCAAAGAAAGTCACCTTTATTACC
TATATTCATTTTCTTTGCATTTGGTCATGTTTGATACTTAAAATCAAGCT
GGGTACCTTCTATTCATGATATGCACCACTGGAGAGTCTTCTGAGAACTT
TTAAAAATTTCCGTCCATAGAAAAAGTGACGGATTGGGTGGAACAAAAGC
AGAAAAGTTGCATAATTTCGTGAAGTCATTGCAGTGGTGCATATCATGAA
TTGCTATTTTGTGTTCGATTTCGTGCTGAGTAAACAAATATCCTTGAAAT
TTCTTTCTCCAATCTTGCTCCACATCCTTGTCAATTCAAAAACCTTGTTT
TGAAATGCTCAAGTAAGCAAACAATAAAGCCGTCAATTGGAAGAATTACA
TCATCATATCATATCATCATAGATGTATGAATCCACTGGTTTAACCAGTA
GATTTTCATGTGAATCCAGTGAGATGTTATACGAGAAATTGGGTACATAA
GATGAAAGAACAAATGTAAAAGCTTTGTCAATATCGTTTATTTCTTTGTT
TTCTTTCAGGAAATAATTGAAGAGGACAAATTCATCATCAGTGCAGATCG
TGATGAAAAGATCCGCATCAGCCATCACCCAAACGCTTATAATATACATA
ATTATTGTCTAGGTCATAAAAAGTAAGTGATGATTTGTTAATTATTTCTC
TTCGATCAGCTTAAATACAAAATTAATAATCATTCGTTATCGTAAATACG
GTGCCGTAAATATGTCATGAAAGCTTTTTGGATTATTTTCAAAGAAGTTT
GATAAAGAGTTTTCTTCTAATTTTTTTTTTCATTTTTCCTCGTTATTATC
GCAGTTTGGTATCTTTCATCGAGAACATTGGGAATAATAGACTACTTTCT
ATATCTGCAGTAAGTACTTTGTCTCGTAAATGCAATATTATTGGTCAATT
TTTTTTCTGGAAAAGTGTTTGGAAAAATCCTGTCAAATGATATACGTTAA
TTTCTTCCCAATTTGATTTTTCCATCAAGTCTTGTCGAAAAAAACGGTCA
GTAATAAGATATAGTGGGTTAGTGATAAGCTAGAACTGTAGCTGTAATTT
TACACTTTTTAACATTTAATTTATAATCGATGCAAATTTACTGGCGAATA
GACCTTATCGGAGTTTTTGATATTTCTAAAAAAGCGATCCATTGTGGGAT
TGTTTCGAGTGTATTACAATAGAGATCTCTCGAGGAATTCCTAAGAGATT
TCTATTGTAATACACTCGAAACAATCCCACAATGCATCGCTTTTTTAGAA
ATATCAAAAACTCAGATAAGGTCTATTATCAATGTGGTAGTGAACTCGTG
CTAATTCGAACTTCTATTATCCGAATCTTTCTATAATTCGAAATAGTTCT
CAGTTCAAGGGGAAAGCCTCGTAAAATACTTTCTACAAAAATTTTGGTCC
CTTGAAAATCAAATTAGAGAGAGTCAATTATAGCTGATGATTTATTTGCA
CAGCTTCCTCTTTTAGGATAAAACCATCAAATTATGGAACTACTACGATG
GAAAGGAACTATCTTCTTTGGATATGAAAGAGTGCACTGAAAAGGTTTAC
CACATTGTTTTAATTGGTTCTCACTATGCAAAAGACAAAAGAACCTTAAC
CATTTAATATAAAGAGTTCCTTGTGATCATCTTAAACAGAAATATTTTCA
AGTGCAACAGCTTTAACAGATATTGCTTTATCTTTTATAGGAGTTTGTAC
CAACGAAATTTGTGACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAG
TAAGTATAATAAAGAGGTTTGATTTTAATAACATTCCCGTCATGGCGAAA
ATCTTAGCAAACACTCCCTATAATTCGCAACCTTCCATATTTGGAAAGAT
TTTTTTTGTGAACATGCATTATTTGACACCTAGACTACTTTCCCTGATAG
TTTTGTGAATTAATACTTCTTTTGTTTTCTAGGCTTCGAGGCGTTGTTCA
TTTAGAAATCAACGAAGACAACCTGAAATACATTCGACTGATTGAACTAG
ATATACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGTATACATG
TTATGTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAACAA
TGTAAGTTTTCC

Coding sequence (CDS) from alignment at sc0000061:198564..203075-

>TCONS_00005898 ID=TCONS_00005898|Name=TCONS_00005898|organism=Clytia hemisphaerica|type=CDS|length=963bp|location=Sequence derived from alignment at sc0000061:198564..203075- (Clytia hemisphaerica)
ATGGCTTGTATTTCAACCAACGGATCAGATCTACTTGCAATCAGTTTGAA
AAATAAACTCGTCATCTTCAGGAATGACGAGACGATTCTCAGTTACACCC
ATACACCACCAGTAAAACCCACAGACAAGGAAAAGAAAGAAGACAGCGAG
GAGAAAAAAGAGAGCAAAACAGCACAGCCAACACCTGCAACATCTTTTGA
TTGTCATCAATTTTCCTCTAAAAGAAAATCAGAATGTCAATGTTACTTTG
GAGCTGTCACTGAAGATAAAAAACTACTAGTTTGGAATGTCGAAGCAACC
AAATGTACTTTGCTAATGACCTTAGAATTTCCAAAACGACCAACATCGCT
GAAGTTTCTGAAGAATGAAGACTCTGTACTGGTTTCTGATAAATATGGGG
ATATCTACAAAGCTTCCTTAACTTCTGAAGAGCAAACACCGAAACTCATC
CTTGGTCATTTATCCATGGTTCTTGATATTGAAATAATTGAAGAGGACAA
ATTCATCATCAGTGCAGATCGTGATGAAAAGATCCGCATCAGCCATCACC
CAAACGCTTATAATATACATAATTATTGTCTAGGTCATAAAAATTTGGTA
TCTTTCATCGAGAACATTGGGAATAATAGACTACTTTCTATATCTGCAGA
TAAAACCATCAAATTATGGAACTACTACGATGGAAAGGAACTATCTTCTT
TGGATATGAAAGAGTGCACTGAAAAGGAGTTTGTACCAACGAAATTTGTG
ACGTGTGATAACTCTGTCCTAGTTATTGGAGAACAGCTTCGAGGCGTTGT
TCATTTAGAAATCAACGAAGACAACCTGAAATACATTCGACTGATTGAAC
TAGATATACAACCTGTCGATATTTGTTGCACGGACTGCGGAAAAGTATAC
ATGTTATGTGCAAGTCCTGATCAACCTTTAAAAGTCTTCACAAAATCTAA
CAATGTAAGTTTT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003364	XLOC_003364	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00005898-protein	TCONS_00005898-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000061	supercontig	sc0000061:198564..203075 -

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
67.8796	61.5093	33.109	27.8646	12.8985	9.47414	16.6306	13.9465	18.3568	14.2497	15.3679	19.4748	22.3341	24.9694	27.2035	25.6759	20.5283	26.682	7.92792	7.63982	17.9657	14.8435	48.6494	41.6819	23.5241	27.9794	8.0308	7.52248	26.1893	29.6846

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR015943	WD40/YVTN_repeat-like_dom
IPR028884	Trm82
IPR017986	WD40_repeat_dom
IPR001680	WD40_repeat

Vocabulary: **Molecular Function**
Term	Definition
GO:0005515	protein binding

Vocabulary: **Biological Process**
Term	Definition
GO:0036265	RNA (guanine-N7)-methylation

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0036265	RNA (guanine-N7)-methylation
molecular_function	GO:0005515	protein binding

Blast

[Close]

BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Match: WDR4 (tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 OS=Homo sapiens GN=WDR4 PE=1 SV=2)

HSP 1 Score: 120.939 bits (302), Expect = 1.178e-30
Identity = 75/250 (30.00%), Postives = 132/250 (52.80%), Query Frame = 3

Query:  315 SECQCYFGAVTEDKKLLVWNVEATKCTLLMTLEFPKRPTSLKFLKNEDSVLVSDKYGDIYKASLTSEEQTPKLILGHLSMVLDXXXXXXDKFIISADRDEKIRISHHPNAYNIHNYCLGHKNLVSFIENIGN--NRLLSISADKTIKLWNYYDGKELSSLDMKECTE-------KEFVPTK--FVTCDNSVLVI--GEQLRGVVHLEINEDNLKYIRLIELDIQPVDICCTDCGKVYMLCASPDQPLKVF 1025
            S+   YF    + K+L+++  +  +C  + T+   +R T+L F+ +E+ VLV+DK GD+Y  S+       +L LGHLSM+LD+ +  +D+FI++ADRDEKIR+S     ++I ++CLGH   VS I  +      LLS S D T++LW Y  G++L    +    E       ++F  ++  F   +N V ++  G  +  +  L+     L Y + +    Q  D+   +   +++L    + PL ++
Sbjct:   70 SKSGSYFALTDDSKRLILFRTKPWQCLSVRTVA--RRCTALTFIASEEKVLVADKSGDVYSFSVLEPHGCGRLELGHLSMLLDVAVSPDDRFILTADRDEKIRVSWAAAPHSIESFCLGHTEFVSRISVVPTQPGLLLSSSGDGTLRLWEYRSGRQLHCCHLASLQELVDPQAPQKFAASRIAFWCQENCVALLCDGTPVVYIFQLDARRQQLVYRQQLAFQHQVWDVAFEETQGLWVLQDCQEAPLVLY 317

The following BLAST results are available for this feature:

BLAST of TCONS_00005898 vs. Swiss-Prot (Human)

BLAST of TCONS_00005898 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
WDR4	1.178e-30	30.00	tRNA (guanine-N(7)-)-methyltransferase non-catalyt...	[more]

You are here

TCONS_00005898 (transcript) - C. hemisphaerica