TCONS_00005899 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005899
Unique NameTCONS_00005899
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1198

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005899 ID=TCONS_00005899|Name=TCONS_00005899|organism=Clytia hemisphaerica|type=transcript|length=1198bp
caaAAATAAAGTGTGAAATATTCAAATGGAGGGAAAAAAAGACACAACCA
TTGAATCGTCAGgtTCTGTTTTGAACATGGCCAATTCATTTAGCAGTGTT
GATGAAGCAACAATAGCAATCACACATTTCATGGCCAAAACAAACTCTAG
CTTTGCAGTCAATAAAACAGATGGGGAGTTTGGTAAACCAGGTATCAAGT
TTGAGAAGCATCGTATTTTATTTGAAGATATCTCAAAAGAAGGGGTCATC
AAACAAATCCAGTTTACAGGTTATCCCTTCCTTGTGACAGGGATGAAAAG
GATGGAATGCTCTCACGGTGTTGATCGTGATAAAGAAAGGaaactgaaaa
gaaaacttgaaaACAGTACAGAAGAAGAATATCAACAACGGAAATCTCGC
AGTGgaagaatttcaaagaaaatgggTTGCCCAGCATCGATCCTTTTGAG
agatattatatttttcaatgatgACAAGATAGAAGAGAATATCAAATATC
AAAAGTCCAAAGCCATTAGTTGCATCAGACAGAAAATAGATGAAGGGACA
ATCCATTTCACGCGAAGGATACTGGTGAAGTTTCCAGATCCTAACTCACA
TGAGGGACATTCAACAGACGAGTCTGCTGGTTCATTACAAAGACTGGATA
AAAGTATAATAGAGAAAATTCAAGAACTTGTTATACATGGCATAGATGAC
ATAAATGAGCTTGAAAATTTATTACATGAATATGTGGCTAAGCTCTTTCA
CGGTGACATTCCTCCAATAACATGTAGGAAATTCTTTCCTGAACCTAAAG
ATATAAGAAATCATGTGTATCGAATTAAAGCACAAATGAATACAACAAGC
AACTCTCATCCTGTTGGAAACTCTACCAAAGTTTGTGCACCAAAGAAGAA
GGTGTCACTTTCAACAACATCTAACAGTCAACAAACAGCTTGTGGTACTA
ATTTAACCATGAATAACCACCATCAATTTATCACAGATAAACGTGAAAAA
GTTAGATTCTTGTGCAACGAGGTTGAAAGTTTACTCGATACGTGTGatcc
aaaagttttggatgACTTGGAGGAGAGATTACGACAGATTCGAGATTCAA
TGGTACCTGCTTGCATCAGCGAACAAGATGTGGTGTCGTCCAAAGATGAA
TAGTTTGATCATGATTTGATATTTGTAACCTTTGTAAAAATGTATATA
Run BLAST on NCBI

protein sequence of TCONS_00005899-protein

>TCONS_00005899-protein ID=TCONS_00005899-protein|Name=TCONS_00005899-protein|organism=Clytia hemisphaerica|type=polypeptide|length=375bp
MEGKKDTTIESSGSVLNMANSFSSVDEATIAITHFMAKTNSSFAVNKTDG
EFGKPGIKFEKHRILFEDISKEGVIKQIQFTGYPFLVTGMKRMECSHGVD
RDKERKLKRKLENSTEEEYQQRKSRSGRISKKMGCPASILLRDIIFFNDD
KIEENIKYQKSKAISCIRQKIDEGTIHFTRRILVKFPDPNSHEGHSTDES
AGSLQRLDKSIIEKIQELVIHGIDDINELENLLHEYVAKLFHGDIPPITC
RKFFPEPKDIRNHVYRIKAQMNTTSNSHPVGNSTKVCAPKKKVSLSTTSN
SQQTACGTNLTMNNHHQFITDKREKVRFLCNEVESLLDTCDPKVLDDLEE
RLRQIRDSMVPACISEQDVVSSKDE
Run BLAST on NCBI

transcript from alignment at sc0000061:203255..206321-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005899 ID=TCONS_00005899|Name=TCONS_00005899|organism=Clytia hemisphaerica|type=transcript|length=3067bp|location=Sequence derived from alignment at sc0000061:203255..206321- (Clytia hemisphaerica)
CAAAAATAAAGTGTGAAATATTCAAATGGAGGGAAAAAAAGACACAACCA
TTGAATCGTCAGGTAAATTTTCCGAATTCGTTTTTCATCAAAACCTTGAT
TTGAAAACTTTGTTGTATATTTAGTCTGACATTTTATATCTCTAAAATAT
TTTGTGAGAATTAATTGAAAATGATATTACTTGAAAGCATCTTTTAGGAA
TTAAAAATGAACTCACTCAAACCGTTAGATCTCTATTTGCAAGGTCTCAC
ACTAAAGTTAGCACATTTTATTTTATAGTAAAAAATGTTGATACCTCGCA
GCCCTCAGAAGAAACGCTTGATGTTACAAAACTTTGTAGGATAATACTTT
TTATCGTTAAGAAAGATATAGTATATATTTTTTTACTGTATCTTTGGAAC
TGCAATTGGAACTGGAAAGTTAATTTGATTTTGGGACTTGGTATTATTTG
AACTTCATTTTTTTGAAACTCATCAATGGGTATGGTTATTATGGAGAATT
ATTTTTGTTGTTTTTTTAGGTTCTGTTTTGAACATGGCCAATTCATTTAG
CAGTGTTGATGAAGCAACAATAGCAATCACACATTTCATGGCCAAAACAA
ACTCTAGCTTTGCAGTCAATAAAACAGATGGGGAGTTTGGTAAACCAGGT
TTGTCTTTCATCTGTTTGGGGATATTTAGTTTTCGTTCATCACTAGTAGA
TTTAGGAAGAGATACTTGTCGTTAAGGTTAAGCGTTGAATTATTTCACAC
ATCAAAGTCAATCAAAGTCAGTTTAATTTTAAATGCATGTGTCCTCAACT
CAATAAAAATTCAAAAAATATTTTCGTTAAAGGTTTTATTTTAACATGTT
CCAGTTTCGTATTAATAGACACATATTTCATATCAGGACAGTGTCTGCCT
ATTGTTATTATTATGCTAAAATAAACATATATACATACATTATATTATGC
CCTCTCTCTGATCATCTTGCTTCACTTCCGTGTCAATCCAATGTGAAAAA
GCTTTTAAATTAAAATCGAGTAAGCAAATGATATCACTCTTATTGAAAAA
CAAAACCTTTAAGGCATTTGCAAGAAATGATTTTGATAAATTAATTTTGC
TTGGTACATTCTGTGGAAAGGGAATTGCAAAATATTATTAAAAGGTGTTT
AATTTTCAGAATTTTTTTGTATCTTCTTTGCTGACAATAGGTATCAAGTT
TGAGAAGCATCGTATTTTATTTGAAGATATCTCAAAAGAAGGGGTCATCA
AACAAATCCAGTTTACAGGTTATCCCTTCCTTGTGACAGGGATGAAAAGG
ATGGAATGCTCTCACGGTGTTGATCGTGATAAAGAAAGGAAACTGAAAAG
AAAACTTGAAAACAGTACAGTAAATTGTATTACTTTCTTTTTAAAGTTCA
TCACTTTCAGATATATTTCAAATACTTGTTTTAAGATAAATAGGATTTAA
TCCAGGCATCTATAAAACTTATGACTCCATACATTTGTGAAAAAAGGAAT
TGTATGGTAAGATGCTGGTGTAATAACTATGTCATTATTAAATCTCCCTT
TTATTCATTTTGTTGAAACATTTTTGAAGATTTCAATTTTTTCTCTTCTA
CGTTTTAGGAAGAAGAATATCAACAACGGAAATCTCGCAGTGGAAGAATT
TCAAAGAAAATGGGTTGCCCAGCATCGATCCTTTTGAGAGATATTATATT
TTTCAATGATGACAAGGTTAAAATTTTGTGTGTTATTCTAGATAGAATAG
AGTCAATATTTCATGGGGTAAGCCCAGTAACCTAATAATTTTTTTCAATA
CTTTTTAGTTGTATTAGGGCCACGGCTATTTAGCTCAGCCATAAATTAAT
TGAATGATGGATTGGAAGGATGCCCAATTGAAACATGCAAAGTTATAAAA
AAGCAATTAATAGGATTTTTAAAGATGGCTCTATATGACCAAGCTCGATC
TGGTAGGTAGGTATGATTGAGATAGTTCACCACTGTCCGTCTCTATTACT
TTGTTGTTCATCTTCTTTAATAATAGATAGAAGAGAATATCAAATATCAA
AAGTCCAAAGCCATTAGTTGCATCAGACAGAAAATAGATGAAGGGACAAT
CCATTTCACGCGAAGGATACTGGTGAAGTTTCCAGATCCTAACTCACATG
AGGGACATTCAACAGACGAGGTATGTTTTGAGTTTTTTAGTAACTTCATA
ATGTGATGAACATGGGGGCTAGAATAGACAAAGGATCAGAGAAAATTTTA
TGACTTTATAATAACAAGGTTGGGGATTTGTACTTTGTGTATACCAAAAT
GAAGTCAATTTAGACTAAGATTGGGCTTAAGTTTTTAAAGCAAAGAAAAA
AAGTACTTTCTTTAGACTTTGACTTGATCTTTAAAATAAGTACGGGAGTT
GGCAGTAATAATATAACAACTAACGAGCATTATTTTAAAAGCTGCTAAAA
TTTTGTCTCGTATATTTAAAGCTTTTTTATGTGATGTTTAGTCTGCTGGT
TCATTACAAAGACTGGATAAAAGTATAATAGAGAAAATTCAAGAACTTGT
TATACATGGCATAGATGACATAAATGAGCTTGAAAATTTATTACATGAAT
ATGTGGCTAAGCTCTTTCACGGTGACATTCCTCCAATAACATGTAGGAAA
TTCTTTCCTGAACCTAAAGATATAAGAAATCATGTGTATCGAATTAAAGC
ACAAATGAATACAACAAGCAACTCTCATCCTGTTGGAAACTCTACCAAAG
TTTGTGCACCAAAGAAGAAGGTGTCACTTTCAACAACATCTAACAGTCAA
CAAACAGCTTGTGGTACTAATTTAACCATGAATAACCACCATCAATTTAT
CACAGATAAACGTGAAAAAGTTAGATTCTTGTGCAACGAGGTTGAAAGTT
TACTCGATACGTGTGATCCAAAAGTTTTGGATGACTTGGAGGAGAGATTA
CGACAGATTCGAGATTCAATGGTACCTGCTTGCATCAGCGAACAAGATGT
GGTGTCGTCCAAAGATGAATAGTTTGATCATGATTTGATATTTGTAACCT
TTGTAAAAATGTATATA

Coding sequence (CDS) from alignment at sc0000061:203255..206321-

>TCONS_00005899 ID=TCONS_00005899|Name=TCONS_00005899|organism=Clytia hemisphaerica|type=CDS|length=1128bp|location=Sequence derived from alignment at sc0000061:203255..206321- (Clytia hemisphaerica)
ATGGAGGGAAAAAAAGACACAACCATTGAATCGTCAGGTTCTGTTTTGAA
CATGGCCAATTCATTTAGCAGTGTTGATGAAGCAACAATAGCAATCACAC
ATTTCATGGCCAAAACAAACTCTAGCTTTGCAGTCAATAAAACAGATGGG
GAGTTTGGTAAACCAGGTATCAAGTTTGAGAAGCATCGTATTTTATTTGA
AGATATCTCAAAAGAAGGGGTCATCAAACAAATCCAGTTTACAGGTTATC
CCTTCCTTGTGACAGGGATGAAAAGGATGGAATGCTCTCACGGTGTTGAT
CGTGATAAAGAAAGGAAACTGAAAAGAAAACTTGAAAACAGTACAGAAGA
AGAATATCAACAACGGAAATCTCGCAGTGGAAGAATTTCAAAGAAAATGG
GTTGCCCAGCATCGATCCTTTTGAGAGATATTATATTTTTCAATGATGAC
AAGATAGAAGAGAATATCAAATATCAAAAGTCCAAAGCCATTAGTTGCAT
CAGACAGAAAATAGATGAAGGGACAATCCATTTCACGCGAAGGATACTGG
TGAAGTTTCCAGATCCTAACTCACATGAGGGACATTCAACAGACGAGTCT
GCTGGTTCATTACAAAGACTGGATAAAAGTATAATAGAGAAAATTCAAGA
ACTTGTTATACATGGCATAGATGACATAAATGAGCTTGAAAATTTATTAC
ATGAATATGTGGCTAAGCTCTTTCACGGTGACATTCCTCCAATAACATGT
AGGAAATTCTTTCCTGAACCTAAAGATATAAGAAATCATGTGTATCGAAT
TAAAGCACAAATGAATACAACAAGCAACTCTCATCCTGTTGGAAACTCTA
CCAAAGTTTGTGCACCAAAGAAGAAGGTGTCACTTTCAACAACATCTAAC
AGTCAACAAACAGCTTGTGGTACTAATTTAACCATGAATAACCACCATCA
ATTTATCACAGATAAACGTGAAAAAGTTAGATTCTTGTGCAACGAGGTTG
AAAGTTTACTCGATACGTGTGATCCAAAAGTTTTGGATGACTTGGAGGAG
AGATTACGACAGATTCGAGATTCAATGGTACCTGCTTGCATCAGCGAACA
AGATGTGGTGTCGTCCAAAGATGAATAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003365XLOC_003365Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005899-proteinTCONS_00005899-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005899-exon-sc0000061-1575043694:206260..206321TCONS_00005899-exon-sc0000061-1575043694:206260..206321Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1575043694:205674..205802TCONS_00005899-exon-sc0000061-1575043694:205674..205802Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1575043694:204953..205131TCONS_00005899-exon-sc0000061-1575043694:204953..205131Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1575043694:204606..204713TCONS_00005899-exon-sc0000061-1575043694:204606..204713Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1575043694:204152..204295TCONS_00005899-exon-sc0000061-1575043694:204152..204295Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1575043694:203255..203830TCONS_00005899-exon-sc0000061-1575043694:203255..203830Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:206260..206321TCONS_00005899-exon-sc0000061-1510915933:206260..206321Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:205674..205802TCONS_00005899-exon-sc0000061-1510915933:205674..205802Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:204953..205131TCONS_00005899-exon-sc0000061-1510915933:204953..205131Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:204606..204713TCONS_00005899-exon-sc0000061-1510915933:204606..204713Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:204152..204295TCONS_00005899-exon-sc0000061-1510915933:204152..204295Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1510915933:203255..203830TCONS_00005899-exon-sc0000061-1510915933:203255..203830Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:206260..206321TCONS_00005899-exon-sc0000061-1491911889:206260..206321Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:205674..205802TCONS_00005899-exon-sc0000061-1491911889:205674..205802Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:204953..205131TCONS_00005899-exon-sc0000061-1491911889:204953..205131Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:204606..204713TCONS_00005899-exon-sc0000061-1491911889:204606..204713Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:204152..204295TCONS_00005899-exon-sc0000061-1491911889:204152..204295Clytia hemisphaericaexon
TCONS_00005899-exon-sc0000061-1491911889:203255..203830TCONS_00005899-exon-sc0000061-1491911889:203255..203830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:203255..206321 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	1.7088	0	0	0	0	0.00603421	1.15765	0	0	0	0	1.58787	0	0.814965	0.811449	0	0	0	0.990155	0.232147	0.000364533	1.63535e-05	0.0441828	0	0	0	0	0
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR029309CaRF
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005899 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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