TCONS_00005901 (transcript) - C. hemisphaerica

Overview
NameTCONS_00005901
Unique NameTCONS_00005901
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1209

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00005901 ID=TCONS_00005901|Name=TCONS_00005901|organism=Clytia hemisphaerica|type=transcript|length=1209bp
ataaaaattttatatacaaAAATAAAGTGTGAAATATTCAAATGGAGGGA
AAAAAAGACACAACCATTGAATCGTCAGgtTCTGTTTTGAACATGGCCAA
TTCATTTAGCAGTGTTGATGAAGCAACAATAGCAATCACACATTTCATGG
CCAAAACAAACTCTAGCTTTGCAGTCAATAAAACAGATGGGGAGTTTGGT
AAACCAGGTATCAAGTTTGAGAAGCATCGTATTTTATTTGAAGATATCTC
AAAAGAAGGGGTCATCAAACAAATCCAGTTTACAGGTTATCCCTTCCTTG
TGACAGGGATGAAAAGGATGGAATGCTCTCACGGTGTTGATCGTGATAAA
GAAAGGaaactgaaaagaaaacttgaaaACAGAAGAAGAATATCAACAAC
GGAAATCTCGCAGTGgaagaatttcaaagaaaatgggTTGCCCAGCATCG
ATCCTTTTGAGagatattatatttttcaatgatgACAAGATAGAAGAGAA
TATCAAATATCAAAAGTCCAAAGCCATTAGTTGCATCAGACAGAAAATAG
ATGAAGGGACAATCCATTTCACGCGAAGGATACTGGTGAAGTTTCCAGAT
CCTAACTCACATGAGGGACATTCAACAGACGAGTCTGCTGGTTCATTACA
AAGACTGGATAAAAGTATAATAGAGAAAATTCAAGAACTTGTTATACATG
GCATAGATGACATAAATGAGCTTGAAAATTTATTACATGAATATGTGGCT
AAGCTCTTTCACGGTGACATTCCTCCAATAACATGTAGGAAATTCTTTCC
TGAACCTAAAGATATAAGAAATCATGTGTATCGAATTAAAGCACAAATGA
ATACAACAAGCAACTCTCATCCTGTTGGAAACTCTACCAAAGTTTGTGCA
CCAAAGAAGAAGGTGTCACTTTCAACAACATCTAACAGTCAACAAACAGC
TTGTGGTACTAATTTAACCATGAATAACCACCATCAATTTATCACAGATA
AACGTGAAAAAGTTAGATTCTTGTGCAACGAGGTTGAAAGTTTACTCGAT
ACGTGTGatccaaaagttttggatgACTTGGAGGAGAGATTACGACAGAT
TCGAGATTCAATGGTACCTGCTTGCATCAGCGAACAAGATGTGGTGTCGT
CCAAAGATGAATAGTTTGATCATGATTTGATATTTGTAACCTTTGTAAAA
ATGTATATA
Run BLAST on NCBI

transcript from alignment at sc0000061:203255..206337-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00005901 ID=TCONS_00005901|Name=TCONS_00005901|organism=Clytia hemisphaerica|type=transcript|length=3083bp|location=Sequence derived from alignment at sc0000061:203255..206337- (Clytia hemisphaerica)
ATAAAAATTTTATATACAAAAATAAAGTGTGAAATATTCAAATGGAGGGA
AAAAAAGACACAACCATTGAATCGTCAGGTAAATTTTCCGAATTCGTTTT
TCATCAAAACCTTGATTTGAAAACTTTGTTGTATATTTAGTCTGACATTT
TATATCTCTAAAATATTTTGTGAGAATTAATTGAAAATGATATTACTTGA
AAGCATCTTTTAGGAATTAAAAATGAACTCACTCAAACCGTTAGATCTCT
ATTTGCAAGGTCTCACACTAAAGTTAGCACATTTTATTTTATAGTAAAAA
ATGTTGATACCTCGCAGCCCTCAGAAGAAACGCTTGATGTTACAAAACTT
TGTAGGATAATACTTTTTATCGTTAAGAAAGATATAGTATATATTTTTTT
ACTGTATCTTTGGAACTGCAATTGGAACTGGAAAGTTAATTTGATTTTGG
GACTTGGTATTATTTGAACTTCATTTTTTTGAAACTCATCAATGGGTATG
GTTATTATGGAGAATTATTTTTGTTGTTTTTTTAGGTTCTGTTTTGAACA
TGGCCAATTCATTTAGCAGTGTTGATGAAGCAACAATAGCAATCACACAT
TTCATGGCCAAAACAAACTCTAGCTTTGCAGTCAATAAAACAGATGGGGA
GTTTGGTAAACCAGGTTTGTCTTTCATCTGTTTGGGGATATTTAGTTTTC
GTTCATCACTAGTAGATTTAGGAAGAGATACTTGTCGTTAAGGTTAAGCG
TTGAATTATTTCACACATCAAAGTCAATCAAAGTCAGTTTAATTTTAAAT
GCATGTGTCCTCAACTCAATAAAAATTCAAAAAATATTTTCGTTAAAGGT
TTTATTTTAACATGTTCCAGTTTCGTATTAATAGACACATATTTCATATC
AGGACAGTGTCTGCCTATTGTTATTATTATGCTAAAATAAACATATATAC
ATACATTATATTATGCCCTCTCTCTGATCATCTTGCTTCACTTCCGTGTC
AATCCAATGTGAAAAAGCTTTTAAATTAAAATCGAGTAAGCAAATGATAT
CACTCTTATTGAAAAACAAAACCTTTAAGGCATTTGCAAGAAATGATTTT
GATAAATTAATTTTGCTTGGTACATTCTGTGGAAAGGGAATTGCAAAATA
TTATTAAAAGGTGTTTAATTTTCAGAATTTTTTTGTATCTTCTTTGCTGA
CAATAGGTATCAAGTTTGAGAAGCATCGTATTTTATTTGAAGATATCTCA
AAAGAAGGGGTCATCAAACAAATCCAGTTTACAGGTTATCCCTTCCTTGT
GACAGGGATGAAAAGGATGGAATGCTCTCACGGTGTTGATCGTGATAAAG
AAAGGAAACTGAAAAGAAAACTTGAAAACAGTACAGTAAATTGTATTACT
TTCTTTTTAAAGTTCATCACTTTCAGATATATTTCAAATACTTGTTTTAA
GATAAATAGGATTTAATCCAGGCATCTATAAAACTTATGACTCCATACAT
TTGTGAAAAAAGGAATTGTATGGTAAGATGCTGGTGTAATAACTATGTCA
TTATTAAATCTCCCTTTTATTCATTTTGTTGAAACATTTTTGAAGATTTC
AATTTTTTCTCTTCTACGTTTTAGGAAGAAGAATATCAACAACGGAAATC
TCGCAGTGGAAGAATTTCAAAGAAAATGGGTTGCCCAGCATCGATCCTTT
TGAGAGATATTATATTTTTCAATGATGACAAGGTTAAAATTTTGTGTGTT
ATTCTAGATAGAATAGAGTCAATATTTCATGGGGTAAGCCCAGTAACCTA
ATAATTTTTTTCAATACTTTTTAGTTGTATTAGGGCCACGGCTATTTAGC
TCAGCCATAAATTAATTGAATGATGGATTGGAAGGATGCCCAATTGAAAC
ATGCAAAGTTATAAAAAAGCAATTAATAGGATTTTTAAAGATGGCTCTAT
ATGACCAAGCTCGATCTGGTAGGTAGGTATGATTGAGATAGTTCACCACT
GTCCGTCTCTATTACTTTGTTGTTCATCTTCTTTAATAATAGATAGAAGA
GAATATCAAATATCAAAAGTCCAAAGCCATTAGTTGCATCAGACAGAAAA
TAGATGAAGGGACAATCCATTTCACGCGAAGGATACTGGTGAAGTTTCCA
GATCCTAACTCACATGAGGGACATTCAACAGACGAGGTATGTTTTGAGTT
TTTTAGTAACTTCATAATGTGATGAACATGGGGGCTAGAATAGACAAAGG
ATCAGAGAAAATTTTATGACTTTATAATAACAAGGTTGGGGATTTGTACT
TTGTGTATACCAAAATGAAGTCAATTTAGACTAAGATTGGGCTTAAGTTT
TTAAAGCAAAGAAAAAAAGTACTTTCTTTAGACTTTGACTTGATCTTTAA
AATAAGTACGGGAGTTGGCAGTAATAATATAACAACTAACGAGCATTATT
TTAAAAGCTGCTAAAATTTTGTCTCGTATATTTAAAGCTTTTTTATGTGA
TGTTTAGTCTGCTGGTTCATTACAAAGACTGGATAAAAGTATAATAGAGA
AAATTCAAGAACTTGTTATACATGGCATAGATGACATAAATGAGCTTGAA
AATTTATTACATGAATATGTGGCTAAGCTCTTTCACGGTGACATTCCTCC
AATAACATGTAGGAAATTCTTTCCTGAACCTAAAGATATAAGAAATCATG
TGTATCGAATTAAAGCACAAATGAATACAACAAGCAACTCTCATCCTGTT
GGAAACTCTACCAAAGTTTGTGCACCAAAGAAGAAGGTGTCACTTTCAAC
AACATCTAACAGTCAACAAACAGCTTGTGGTACTAATTTAACCATGAATA
ACCACCATCAATTTATCACAGATAAACGTGAAAAAGTTAGATTCTTGTGC
AACGAGGTTGAAAGTTTACTCGATACGTGTGATCCAAAAGTTTTGGATGA
CTTGGAGGAGAGATTACGACAGATTCGAGATTCAATGGTACCTGCTTGCA
TCAGCGAACAAGATGTGGTGTCGTCCAAAGATGAATAGTTTGATCATGAT
TTGATATTTGTAACCTTTGTAAAAATGTATATA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003365XLOC_003365Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00005901-exon-sc0000061-1575043694:206260..206337TCONS_00005901-exon-sc0000061-1575043694:206260..206337Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1575043694:205674..205802TCONS_00005901-exon-sc0000061-1575043694:205674..205802Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1575043694:204958..205131TCONS_00005901-exon-sc0000061-1575043694:204958..205131Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1575043694:204606..204713TCONS_00005901-exon-sc0000061-1575043694:204606..204713Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1575043694:204152..204295TCONS_00005901-exon-sc0000061-1575043694:204152..204295Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1575043694:203255..203830TCONS_00005901-exon-sc0000061-1575043694:203255..203830Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:206260..206337TCONS_00005901-exon-sc0000061-1510915933:206260..206337Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:205674..205802TCONS_00005901-exon-sc0000061-1510915933:205674..205802Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:204958..205131TCONS_00005901-exon-sc0000061-1510915933:204958..205131Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:204606..204713TCONS_00005901-exon-sc0000061-1510915933:204606..204713Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:204152..204295TCONS_00005901-exon-sc0000061-1510915933:204152..204295Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1510915933:203255..203830TCONS_00005901-exon-sc0000061-1510915933:203255..203830Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:206260..206337TCONS_00005901-exon-sc0000061-1491911889:206260..206337Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:205674..205802TCONS_00005901-exon-sc0000061-1491911889:205674..205802Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:204958..205131TCONS_00005901-exon-sc0000061-1491911889:204958..205131Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:204606..204713TCONS_00005901-exon-sc0000061-1491911889:204606..204713Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:204152..204295TCONS_00005901-exon-sc0000061-1491911889:204152..204295Clytia hemisphaericaexon
TCONS_00005901-exon-sc0000061-1491911889:203255..203830TCONS_00005901-exon-sc0000061-1491911889:203255..203830Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000061supercontigsc0000061:203255..206337 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
3.39424	3.8429	6.37734e-07	1.08175	0	0	0	0	1.82735	1.81168	1.2199	2.41205	1.21832	2.04566	1.71252	2.87298	2.92147	5.20251	1.52728	0.996487	2.39776	1.62335	7.04727	3.6507	0	0	1.40649	3.5823	4.5707	2.31276
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00005901 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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