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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00005994 ID=TCONS_00005994|Name=TCONS_00005994|organism=Clytia hemisphaerica|type=transcript|length=2152bpRun BLAST on NCBI protein sequence of TCONS_00005994-protein >TCONS_00005994-protein ID=TCONS_00005994-protein|Name=TCONS_00005994-protein|organism=Clytia hemisphaerica|type=polypeptide|length=482bp FLDSKMAPNNETSTASCGKCGPGYATPLEATKGPREKLLYFPCIPADATKRun BLAST on NCBI transcript from alignment at sc0000062:67127..80408+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00005994 ID=TCONS_00005994|Name=TCONS_00005994|organism=Clytia hemisphaerica|type=transcript|length=13282bp|location=Sequence derived from alignment at sc0000062:67127..80408+ (Clytia hemisphaerica) Coding sequence (CDS) from alignment at sc0000062:67127..80408+ >TCONS_00005994 ID=TCONS_00005994|Name=TCONS_00005994|organism=Clytia hemisphaerica|type=CDS|length=15939bp|location=Sequence derived from alignment at sc0000062:67127..80408+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00005994 vs. Swiss-Prot (Human)
Match: SBP1 (Selenium-binding protein 1 OS=Homo sapiens GN=SELENBP1 PE=1 SV=2) HSP 1 Score: 535.028 bits (1377), Expect = 0.000e+0 Identity = 279/473 (58.99%), Postives = 354/473 (74.84%), Query Frame = 2
Query: 41 TASCGKCGPGYATPLEATKGPREKLLYFPCIPADATKR--NYLCTVDADPESKDYATVIHRTYIEAGNGDEIHHSGWNACSSCHGDPNRQRNLLVLPSITSASVFFFDVATDPRKPTLKHVINNDEMLESAKIQNLHTAHCLXXXXXXXXXXXXXXXXXXXXFALVDGKTLKVTGTWEKEGQAAPMGYDFWYQPRHNVMVSSEWGSPKAFLTGFNPAHVEQGMYGNNLHIWKWNEKEYVKKIDLGPNGLIPLELRFLHHPDESEGYVGCALSSTLFRIYKDXXXXXXXXXXXXXXPLDVEGWVLPTMPGLITDILISLDDRFLYLSNWLHGDVRQYDITDRRKPKLVGQVWXXXXXXXXXXXXXLK--EGYEQPEPTILNGKKVEGATQMIQLSLDGKRLYVTTSLFSAWDKQFYPDLAKHGSFLLQVDVDNEKGGMKINEKFAIDFATEPEGPAFAHEVRYPGGDCSSDIWV 1447
CG CGPGY+TPLEA KGPRE+++Y PCI + +YL TVD DP+S Y VIHR + DE+HHSGWN CSSC GD + R LVLPS+ S+ ++ DV ++PR P L VI ++ ++ LHT+HCL +G +MIS +G+V G+GKGGF L+DG+T +V GTWE+ G AAP+GYDFWYQPRHNVM+S+EW +P GFNPA VE G+YG++L++W W E V+ + L +GLIPLE+RFLH+PD ++G+VGCALSST+ R YK+E W E+V QV P V+GW+LP MPGLITDIL+SLDDRFLY SNWLHGD+RQYDI+D ++P+L GQ+++GGSI KG V+VL+ E QPEP ++ GK+V G QMIQLSLDGKRLY+TTSL+SAWDKQFYPDL + GS +LQVDVD KGG+K+N F +DF EP GPA AHE+RYPGGDCSSDIW+
Sbjct: 2 ATKCGNCGPGYSTPLEAMKGPREEIVYLPCIYRNTGTEAPDYLATVDVDPKSPQYCQVIHRLPMPNLK-DELHHSGWNTCSSCFGDSTKSRTKLVLPSLISSRIYVVDVGSEPRAPKLHKVIEPKDIHAKCELAFLHTSHCLASGEVMISSLGDVKGNGKGGFVLLDGETFEVKGTWERPGGAAPLGYDFWYQPRHNVMISTEWAAPNVLRDGFNPADVEAGLYGSHLYVWDWQRHEIVQTLSL-KDGLIPLEIRFLHNPDAAQGFVGCALSSTIQRFYKNEGGTWSVEKVIQVPPKKVKGWLLPEMPGLITDILLSLDDRFLYFSNWLHGDLRQYDISDPQRPRLTGQLFLGGSIVKGGPVQVLEDEELKSQPEPLVVKGKRVAGGPQMIQLSLDGKRLYITTSLYSAWDKQFYPDLIREGSVMLQVDVDTVKGGLKLNPNFLVDFGKEPLGPALAHELRYPGGDCSSDIWI 472 The following BLAST results are available for this feature:
BLAST of TCONS_00005994 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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