TCONS_00006015 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006015
Unique Name	TCONS_00006015
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1966

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000062:505263..510829+

transcript sequence

>TCONS_00006015 ID=TCONS_00006015|Name=TCONS_00006015|organism=Clytia hemisphaerica|type=transcript|length=1966bp
ttcagaattaaaaaaaaatgatcatgaaattatttttcatctttctaatt
tcaattcaattatcGAATGGATTAGATAAAAATGGTTATGTTGTATATTG
CCCCTGTATGGGACGATTTGGCAACCAGGCTGATCAATTGTTAGGTTCAA
TGGCATTTACAAAGGCACTGAATAGAACTTTGATTTTACCACACTGGGTC
ACATATCCTTCATCCATGCCTATGTCTTCTAAACAAATACCATTTGACAG
GTGGTTTCAAATTGAACCAATCAGAGAATATCAGAAAGTCATCACAATGA
AGAAGTTTATGAAAGACTTGGCTCCCAAAGTGTGGCCTGCTGCTGAACGA
AAAGGTTTTTGTTATCGGCCTCGTTCTGAATCAGAAGAAACATGTGGAAT
GAAAGAGGGGAACCCGTTTGGACCTTTTTGGGACCATTTTGGTATCTCTT
TTAAAGATAGTGTGTTTCACGAAGAGTTACTTTGGTCCACCCATAAATAT
AACGTTGAGGAATGGCACAGAAAATTTCCAGCAGGACAATATCCAGTGTA
CGCATTTCCAGGTGCACCTGGTAATTTCCCTTCTTTACCAGAACATCATT
CTATCCAGAAGTATCTCCATTTCTCAAAGTTGATCAATCGAATATCTGAT
GAATACATTGAAAATGAGTTGGAAGGAAAACCGTTCTTGGCAATCCATCT
GAGAAATGGGTTGGATATGACAAGAGTTTGTGATGAAATTGACAACGATA
AATATCACAGCCTATTCTCTTCTGCTCAATGCACCCAACTAGAAGGCAAT
CCAAAACTGACATCAGCGATGTGTAACCCACCTAAGGAGGACATCATCCA
AAAAGTAGTTCACCATATCAAAAAGATGAAATTGAAAGCCCTGTTCATCG
CCACCGATAATGATCCAATgataaaagatttcaagaaGGCCTTCAAAGCG
ATCAAATTTCCAGTCAGTATTCATCGGCGTGTACACAAAGATGTCGAAAC
TGAATGTGATGGACCGCTAATCGATATTGCTCTCATGAGTAAAGCTGACA
TGTTTATTGGCAATTGTGTTTCGTCTTTCACGGCGTTCGTGAGACGCCAA
CGTTTCAGTCGTGGAAAACAAATGGATTTCTTTAACTTGAAATCCAATAA
ACCTCTTCATACAGAACTTTAGAATTTGACTAcctaaattttttattaca
taGTGCTTGGACACTAAGACCTAAGGATACTGGGtgaatttttcccattt
tcaccctgaaatgtgaccaaaatgactaaaactagacgaaaaattgaaaa
actttttttaatctcaccctgaaaattgtcaaaaggtcgaccctgtcaga
tacatcttgaaaattagtaaatttgggaccctggcCAGCGATGGAGTTCA
TAAGTGCGCAAGTCAGTGCAATAGCTTCAGTCATTTGAAGTCATTCTATC
CAATTCTCTCCCACTTGTTTATTAAGCACAATGATTGATAGATGCTTTGA
TtggtattttatttttctcataataatttttgaattCATGAAATTCATTA
CGCAATGTATTCTACGGATACCCAGTAAATTTCCCGGTAAATTTAAGCTa
gagaaaaatagtttcaaatTAGCCAATAAATAAATTGTTTTAATTTGACA
CTGCTGGCGAAAGCTGGAGTGTTTCCATACGAGAAAACATTACGTACTAG
TATGCAACGAATATCATCAGGAACCTTACTTGTTTGTTTTGGTGGTTGTG
GATATGTACCTCGGGTGTTATTGGTTTGATTTGATTGCACCCAATGGTGA
TTTCTAagttcaaattgattttaaagaaCTTGCCTTTTACTAATGTTTGT
AAAACATTTGAATtgctaattttttatcaatatttataTGCATAcaatta
gaattttttaataattgcattttttatttacattttgaagaaaaaagaaa
tttcatacaAAAACAT

Run BLAST on NCBI

transcript from alignment at sc0000062:505263..510829+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006015 ID=TCONS_00006015|Name=TCONS_00006015|organism=Clytia hemisphaerica|type=transcript|length=5567bp|location=Sequence derived from alignment at sc0000062:505263..510829+ (Clytia hemisphaerica)
ttcagaattaaaaaaaaatgatcatgaaattatttttcatctttctaatt
tcaattcaattatcGAATGGATTAGATAAAAATGGTTATGTTGTATATTG
CCCCTGTATGGGTAAGTCACAGTGCTTGACAAATAATTTTAAGCTGTTTT
GTCTCTTAAGTGCTGCTTCATTGAAATATTAAAGAAATCATAGTAATAAA
CCCTtacatgcccccccccccaatattttgcaaagtaatttttttttact
tcaaaaaatcttatatataccgtttagaggggtgagATAGGGGTGAAAAG
CCGAAAATTTTCTGTGTCGCCCAACCATGGCGGGCGACAtattttttggc
cccctcaattcgattcgcacgccgggggccatggCTTATTTATCCCTCCA
AACAGAAATTCTAATGCTAATTTTTTCTCGGTAGATTTATAAAACCACAA
ATAATATAGACATACCTCAATACCTCAATAGCATTTCCACTTATTTCTTT
ACCTAAGCAACATTCAATCTAGTCAATGGCTACAGACTATGTATGTAAGA
CAAGATATCGTTTAAACATAAACGCATTATTATGAAAAGCTattaaacat
aaacaaagatgtcaaagttcaaaaagaaaagattttcaaagctCAGCTTG
AAGCCACCAAATTTGAAAGAAACGATACTAGAATTTCTTTGAAtagcttt
taaaatttttaaaagaggTTTTCAAATGAAATACGAATGAAGGGTATGGA
AATCTAAGTGATTGTTATTTAATTGtattgatgactttttttataataac
ttGTTTCAACAACAATTGATTTTGATACTCACCTACCTGCAGGTTGTTTA
TTATTTTATCATCTTTCTTTTGTCTGGATAGGACGATTTGGCAACCAGGC
TGATCAATTATTAGGTTCAATGGCATTTACAAAGNTTCTTTTGTCTGGAT
AGGACGATTTGGCAACCAGGCTGATCAATTGTTAGGTTCAATGGCATTTA
CAAAGGCACTGAATAGAACTTTGATTTTACCACACTGGGTCACATATCCT
TCATCCATGCCTATGTCTTCTGTAAGTACTGAATCTTAAAAGGTATGGTT
TTTCTGGGTCACATATCCTTCATCCATGCCTATGTCTTCTGTAAGTACTG
AATCTTAAGAGGTATGGTTTTTCTTACCACTAATTAATAAGCGATATATT
TCAGAGGTCATAAATTCACTCTTTAAGTTGAGGGTGTAAAATCTGAGAGT
CTGTCACATTGCATAATCTTTGATCATAAGAATTAATGGGAAACTTAGAC
CATCTTTCTCACTGTTATGCTCCAAAGTGATGACTAATAGTTTAAAGAGt
gaagggaactttcaaaagtATAGAATCTAGAATTAGAAAAATCATGTTCA
TCTATTATTTCCATTTCAGAAACAAATACCATTTGACAGGTGGTTTCAAA
TTGAACCAATCAGAGAATATCAGAAAGTCATCACAATGAAGAAGTTTATG
AAAGACTTGGCTCCCAAAGTGTGGCCTGCTGCTGAACGAAAAGGTATTGC
AAATTATTTGTCACCATTCATGCCTTCGTAAACTTTCCGAACTTCATTTg
aatgaattgtttttttttaatcttttcaaCGATATTAGTAGTTTATTAAA
TTTGAAGcctttttggttgaaaaatggctaacaaaaaaattacttttatt
gCCGACTATATTGGACAACATTACTTGATCAAAGGAGGTCTTTGGGTATA
TTCACACTGTTGCTTGAAAGTTGCTTTGAAATATTGGAACAAAGAATTCC
ACGttcttctcctttgtctcttattatctaagtTTGCTCGATCGCGTAAT
CGTATTTCATGCAAACTTCAAGCAAAAACCATGTTTGATTTTGTGTTGAT
GGCAAAACAATACTTTTGTCAGTGAGAAGGCAATCCTTTGTGGTGTGTAT
ATCAACGTGAGTTCgttgtatttcaaaatttcaagctgCTTCGAATCTAC
GCCACAGAAACAAAGGCAACTATAACTTTCGCTTTCACGTACATCAGCAA
AAAGTAgttaaaaattcttttcttttctagacttTCATCTTTCtatcaac
aaaatatttttatgatttagACACGTTAAAGGCCATTAGCTTTCAGTGTG
AATACATCCTTTGTCCGAATTTTCTCATCTGTGTCAATGTTCGCTGGGTC
AAAAGACAAAGACTATGCTTAAAATCTAATTTCTAAAACAATGATAGTTC
TGAAAGATGNTGTCCGCTGGGTCAAAAGACAAAGACTATGCTTAAAATCT
AATTTCTAAAACAATTATAGTTCTGAAAGATAATTTTCTGTTTAGGTTTT
TGTTATCGGCCTCGTTCTGAATCAGAAGAAACATGTGGAATGAAAGAGGG
GAACCCGTTTGGACCTTTTTGGGACCATTTTGGTATCTCTTTTAAAGATA
GTGTGTTTCACGAAGAGTTACTTTGGTCCACCCATAAATATAACGTTGAG
GAATGGCACAGAAAGTAAGAGTGAACAAGAATCATAAATACAATATTTAA
CTTCTTTATCTAttataaaagtgattttttataTCCAGTAGTCCCGATAA
ACCGAAAAACAATGACTTAGTAGGTGCCTGGATTTCTTTGTGATTCATTG
TGAACAATTTTCTTGGTGAGTTTTTCTGAAAGACTTGACAACCACCTTAC
AATTTTAATATCATTACATAAGGCACTGCATATCTAGTTAATGACTTTTC
TGTTATAATATGCAAGTTCGATCTATTTTCAATCATTATTCCATCAATCT
GTTCCAGATTTCCAGCAGGACAATATCCAGTGTACGCATTTCCAGGTGCA
CCTGGTAATTTCCCTTCTTTACCAGAACATCATTCTATCCAGAAGTATCT
CCATTTCTCAAAGTTGATCAATCGAATATCTGATGAATACATTGAAAATG
AGTTGGAAGGAAAACCGTTCTTGGCAATCCATCTGAGAAATGGGTTGGAT
ATGGTGAGTCTGAAATGCTTTTTGATACATATTGAGTTTTTATCTCTTAG
ATCTGCTAGAATTACTAATTACTAGTTTTACACTACACTTGTGTATGTAC
TATCTACTTGCATGGATCTGGTTTCCCATAATAACGAAAGTGTATCCATT
TTTAGAACACATTACTCCACCATTTTGTCTTTAACCTTAAATTCAGAGAA
AACCATTGCTTGTATGCATTTATTTCTATTCTAGACAAGAGTTTGTGATG
AAATTGACAACGATAAATATCACAGCCTATTCTCTTCTGCTCAATGCACC
CAACTAGAAGGTAAGTCGACTGTTCTCTATCTGGAATCCGATGTAAATAT
ATTCACCCggcacgctaaagctctaaaggtaAGGAAGTTTCAACATATGA
AAGGCTtggattacggaatttcgctaaaCCGCGTCACGGATTTTGCAGCA
GGAAGCCCGAACCAAAATTCTCGTTTTTGAGGATTGAAATTACTTTCAGG
CTTAGACCGGGGATACGGCACATCTATAGCCGACCATTATCCCTCCCCTT
TAAGTACTATGAATTACAAAACGCCAGACTAAAATCAAATAAGCGAATat
ccttttttctaaaaaaattacaaaaatgtgAAGATAATTAACCTGGGAAT
GTGAGTGGGTCAATTAATCCTGCATGGTTTTCCTTGATATAATCAAGTCT
TGATTTTTCTACCAATCAGGCAATCCAAAACTGACATCAGCGATGTGTAA
CCCACCTAAGGAGGACATCATCCAAAAAGTAGTTCACCATATCAAAAAGA
TGAAATTGAAAGCCCTGTTCATCGCCACCGATAATGATCCAATgataaaa
gatttcaagaaGGCCTTCAAAGCGATCAAAGTTAGTACAATTTCCAATTT
CCTTTATCCAAgcaaatacattttttatttcctaAAAGCTGACACGAGCG
GCTAGATGGAGTTTTTATGAGATACTTAAATAatattggtcatttgaagt
tataaaaatgacgcgttctttagaaaaagtaacaaaattgttttaataCT
AGTTAtggaccaaccaaatcaaataagagcttgtaaaaactccatctcgt
cccttttttaaacctaaagatactttaattgctgagcactAAGCAAAAAG
ATAACGAGTACcatttttcactgatttttaatgtctttggtatgaccgga
gcggggattgaacccacaaccttgttcACCGTAGCCGGATGATCTACCtt
tgcactacggtcgcttttCATGTGCAACGAGACGACAGAAAACCAGCAGA
AATATTGATAGTTTGAGTTTCTTAACCCTTTCTAGTTTTAAAGAGCTTAT
ACTCTCTATATATGGTGAATTCTTTTCTTTTGCTGATCCTAGAACAATAG
TTTTATCAGTAAATCCTTTGTTGAAGAGAAATACTTTTATGGGGCGTTCA
GGAGAACTTCTACCTAAAAATAAATCTAGCATTACTCTAACAAATAATTC
ACTGCATAGCCAATACGTGCCCCGTGTAACAACAAATATTCTACCTCTCT
CGTTTAGTTTCCAGTCAGTATTCATCGGCGTGTACACAAAGATGTCGAAA
CTGAATGTGATGGACCGCTAATCGATATTGCTCTCATGAGTAAAGCTGAC
ATGTTTATTGGCAATTGTGTTTCGTCTTTCACGGCGTTCGTGAGACGCCA
ACGTTTCAGTCGTGGAAAACAAATGGATTTCTTTAACTTGAAATCCAATA
AACCTCTTCATACAGAACTTTAGAATTTGACTAcctaaattttttattac
ataGTGCTTGGACACTAAGACCTAAGGATACTGGGtgaatttttcccatt
ttcaccctgaaatgtgaccaaaatgactaaaactagacgaaaaattgaaa
aactttttttaatctcaccctgaaaattgtcaaaaggtcgaccctgtcag
atacatcttgaaaattagtaaatttgggaccctggcCAGCGATGGAGTTC
ATAAGTGCGCAAGTCAGTGCAATAGCTTCAGTCATTTGAAGTCATTCTAT
CCAATTCTCTCCCACTTGTTTATTAAGCACAATGATTGATAGATGCTTTG
ATtggtattttatttttctcataataatttttgaattCATGAAATTCATT
ACGCAATGTATTCTACGGATACCCAGTAAATTTCCCGGTAAATTTAAGCT
agagaaaaatagtttcaaatTAGCCAATAAATAAATTGTTTTAATTTGAC
ACTGCTGGCGAAAGCTGGAGTGTTTCCATACGAGAAAACATTACGTACTA
GTATGCAACGAATATCATCAGGAACCTTACTTGTTTGTTTTGGTGGTTGT
GGATATGTACCTCGGGTGTTATTGGTTTGATTTGATTGCACCCAATGGTG
ATTTCTAagttcaaattgattttaaagaaCTTGCCTTTTACTAATGTTTG
TAAAACATTTGAATtgctaattttttatcaatatttataTGCATAcaatt
agaattttttaataattgcattttttatttacattttgaagaaaaaagaa
atttcatacaAAAACAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003433	XLOC_003433	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000062	supercontig	sc0000062:505263..510829 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.869189	2.93272	0.234601	0.83672	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3.17416e-07	0.00566823	0	0	0	0.0024182

Blast

[Close]

BLAST of TCONS_00006015 vs. Swiss-Prot (Human)
Match: OFUT1 (GDP-fucose protein O-fucosyltransferase 1 OS=Homo sapiens GN=POFUT1 PE=1 SV=1)

HSP 1 Score: 254.988 bits (650), Expect = 2.660e-77
Identity = 140/376 (37.23%), Postives = 216/376 (57.45%), Query Frame = 3

Query:   63 SNGLDKNGYVVYCPCMGRFGNQADQLLGSMAFTKALNRTLILPHWVTYPSSM-PMSSKQIPFDRWFQIEPIREYQKVITMKKFMKDLAPKVWPAAERKGFCYR---PRSESEETCGMKEGNPFGPFWDHFGISFKDSVFHEELLWSTHKYNVEEWHRKFPAGQYPVYAFPGAPGNFPSLPEHHSIQKYLHFSKLINRISDEYIENELEGKPFLAIHLRNGLDMTRVCDEIDNDKYHSLF-SSAQCTQLEGNPK--LTSAMCNPPKEDIIQKVVHHIKKMKLKALFIATDNDPMXXXXXXXXXXXXXPVSIHRRVHKDVETECDGPLIDIALMSKADMFIGNCVSSFTAFVRRQRFSRGKQMDFFNLKSNKPLHTEL 1169
            +   D  GY++YCPCMGRFGNQAD  LGS+AF K LNRTL +P W+ Y     P ++  + + ++F++EP++ Y +VI+++ FM+ LAP  WP  +R  +C+     RS  ++TC MKEGNPFGPFWD F +SF  S     + +S   Y  E+W ++F   ++PV A PGAP  FP L EH  +QKY+ +S  + +  +  I   L  +P++ IHLR G D    C  + +    S F +S QC     +    LT  MC P  ++I + V   ++ +  +++++ATD++  + + ++ FK     VS+   V +          +D+ ++ +AD FIGNCVSSFTAFV+R+R  +G+   FF +     L  E 
Sbjct:   26 AGSWDPAGYLLYCPCMGRFGNQADHFLGSLAFAKLLNRTLAVPPWIEYQHHKPPFTNLHVSYQKYFKLEPLQAYHRVISLEDFMEKLAPTHWPPEKRVAYCFEVAAQRSPDKKTCPMKEGNPFGPFWDQFHVSFNKSELFTGISFSA-SYR-EQWSQRFSPKEHPVLALPGAPAQFPVLEEHRPLQKYMVWSDEMVKTGEAQIHAHLV-RPYVGIHLRIGSDWKNACAMLKDGTAGSHFMASPQCVGYSRSTAAPLTMTMCLPDLKEIQRAVKLWVRSLDAQSVYVATDSESYVPELQQLFKGKVKVVSLKPEVAQ----------VDLYILGQADHFIGNCVSSFTAFVKRERDLQGRPSSFFGMDRPPKLRDEF 388

The following BLAST results are available for this feature:

BLAST of TCONS_00006015 vs. Swiss-Prot (Human)

BLAST of TCONS_00006015 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
OFUT1	2.660e-77	37.23	GDP-fucose protein O-fucosyltransferase 1 OS=Homo ...	[more]

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TCONS_00006015 (transcript) - C. hemisphaerica