TCONS_00006021 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00006021
Unique Name	TCONS_00006021
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	397

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at sc0000062:571240..576814+

transcript sequence

>TCONS_00006021 ID=TCONS_00006021|Name=TCONS_00006021|organism=Clytia hemisphaerica|type=transcript|length=397bp
aagtttCACACAACGTTTTGAAATAAAGttagaaaaataccaaaatatct
CACACGGGACCACGGGACGAAACGATGTAAACAATTGAAAGAATACTCAA
AGCGATGAAACAACACGAACACCCTCGCGCCATCCGGGAATATTATGCTA
ATCGCAgcttaaaaatgagaaagacagACAAATATTATCGTCAAGCTGTG
AAGTAAAAATTGATGGTAGTGTTACCCAATTGTAATTTATCGAAAGTGTA
CGTAAGGTAAAAAAGCTAAAAGAATAAAAGTTTATCTGGCTAAAAATTAT
AAAAGCCATGGATCATTTTACAATTAGAAATATCTTTGTcttcttttcgt
ttttcttctaGCGCCGGACCCGATTTCTAGATAGAGATAAATACAAT

Run BLAST on NCBI

transcript from alignment at sc0000062:571240..576814+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00006021 ID=TCONS_00006021|Name=TCONS_00006021|organism=Clytia hemisphaerica|type=transcript|length=5575bp|location=Sequence derived from alignment at sc0000062:571240..576814+ (Clytia hemisphaerica)
aagtttCACACAACGTTTTGAAATAAAGGTATTATATTTATTGATTATGA
AAAGCGCCTGATTATTATAGAGCagagtctccataactggaACACGTATA
GGGAACAGAAATATACAAAGCTGCAaaggtttttaaataaaagctaagca
gggggggggggattttttcaatttgaagGCCTTGATTGAAAAGTGCCTAC
ACAGTCACAGTCTAGATTTAAACTCcaatatcaggattagaaactaggct
agtcttgcctcttttatctttccatgTGCAACAATACAATGCACTACAAT
GCTAATGCTGAcaagcagttagtcacactaggaaatctagctttcagaaa
aaacaacatcagtcatctacaggatgtatttgcatataacaaggatgaga
gttacctgaatcaagttcgcaagacaattaattaaaacttgaaagtttga
aacaaaataaaacgggcagcagccaaaatcaaccaaccaaaatttgtcat
tcaattcccgagacagcacttcgatttttaaggccttgtttatacgctaa
agtagaaataattccgcacatgtaactGGGTCATTGTTTggggtccggca
aaatttccgggaaacagcctatccggtggtgcgcagatctaggtgggttc
cgcctcccccgtagatctttttttTGGGANNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNtggctcaaattttttcatctatgtctcaaattttaggcaatttctca
aagtttttgaaaatgttaatttcattaaaaagcgccgggttattttttca
ggaatccctttagaagttttgcggcgcatttttttgcttgagagtcaagt
aaacgatatagcgctttcatagcattaatctttgatacgcattttggcgg
gacgctagtgtgactaactgacaagttgacacaacacattgacaagtaat
cacccgcaacaaaaaccaacaaaagcAAAAGTAGTCttttctactgattg
cttccgtTGTGCTCCTTACCTTAGCCTGGGAATCaaagcgttaaactttg
ttcacagtctagtttatgagatttttgctgcttgtttaacgcttggcgca
ggtaccgtagagtcgtttaatctcgacatacgtcttgcaatctcgacNgt
ttatgtttgattttttatttcgaagaccagcctacagctatgtcgagatt
gcaagacgtatgtcgagattaaacgactctacggtaactcgcctgcaggg
agattttttcCTGCAATGCAGGTTTGGCCTGAttcacaagtgttacgcgt
aaggcgggcatcacaaataacttgtgttcgcgTCGTCCGTATTTCCTAAT
TTTCCGACTTTTTTGAGTCGGAAAGTCGGAAAAACGTCggatttttataa
atataatataGTCCCAGCTTTATCCCACTTTTAGTGAACCTTCCTattat
accttttgtccttcagaaaagcCAAAAACATTAGCCTTAATCCTTTGCTT
GCAGCTCCtgtcagtatagacttaaactcgtatatcaagattacgggatt
ttgagtgcgggccgattttcagaggTTTCAGTTTCGATTTCCAGTAAACA
TCTTAGCAACGaagtgctcgcccatagttacgttggtttgtgcaaaattc
caaacatagaaacaaattttaaaccactttatcgaaaaggaaataaaaaa
acacaacttttgtatgtttcatttttttgcaCTTTNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgcatgcaaacttcctcgtaactttctcgtgtccatc
attaaaattttacaactttattacgcttcaagtcacgtgataaaaataat
tcgtgcgcttagcctggtttcctcttccttatatataaaaacacacgctc
taggcgctaacagGCCGCACGCCGTGATAGCCAGTANGCCCATAGTTACG
GTGGTTTGTGCAAAATTCCAAACAtagaaacaaattttaaaccactttat
cgaaaaggaaataaaaaaacacaacttttgtatgtttcatttttttgcac
ttttatATATAATTCAAGATATTCTGCTTTGTTTATTTCTACAGCAGCAA
CAGAAATACTCAGAAAGACTTGAGCGCTCAGCTGACACATGCGAGAAGGG
GATGTGGATGAGTGATTTTTCGATTGGAATGTGTAATTATATACGCGTGC
CGCATGCATGTAGTAATTAATAAAAACTAATTAAGCCAAAATCAAACTGT
CGGCNTACGCGTGCCGCATGCATGTAGTAATTAATAAAAACTAATTTAGC
CAAAATCAAACTGTCGGCATAAACATAACGACAAATGTAACGTCAACAAG
TTACTGATGCAGTAGGTATAGTGTGGATAGGCCTATCTTTTCACAATGTT
TATGGTTTTTTTCTCCAGACATTTAGGTGTtgaataattacaaaaatgtt
caaaatgtgAGAAACGATTGTCTTAACGTCACTTTCGTTATCTCATCGTT
TTATATCGTGTTTGCATTAAGAAAGTTCTGCTACAAAAAATGGCAATTTG
GCAAAATGAATCTGGTACGAATTTTTAACTCTTTCTTGTATGGTGGCCCA
AAATGGCCTAATTTAGCCTAATATGTATCATAGGTCCCGGATAAAATTTG
TGATAATGGTACAACATATTTAAGAATTTTAAGCCGTTTTGATGTATcat
aatacccctgtctcacagccccggtggaacagCGAAGACAAATATTTATA
aggaaatctcaatggggaaagaaattatattgtttcaaGCGTAAAAAAAG
CATTTGGATTGGgatgaatttcgagtggggatgagataaaatttgatttc
ccagtggggctgaattGAGGGTATATTTTTTCCACTGGGAACGAAATTTT
GGacgaattttccagtggggctggggtccaaCCGGGTCTGTGGCACAGGA
GTGTATAATATTTCGCCTTTTCTCTAACCTCTGAAGTTATTGGCATATCC
TCTCTCTCATATACATAATTTACATCGAGTGCgtaaaaaaacttcacaaa
gGTGACTgaacaaaattcgaaaattgccCTGGACCAGTAAagagattgaa
tctagcaattccttttaCGTCGGCACCACCACATTTTGTGTCTTtaagtc
agagagttgttgtaatacatttttctgctcagaatttcatgctctttcag
atggtatcaatcattttcgtttattttgacttttgaaaatcagctatttc
tctaccccttatttcccttgcagttttgcctatggcgtcactattttggt
cataaaaagttttcccgcctaatccgcgtcctccctctcaaaaatatctt
gtaatatactcgTTCTTgtgaatagactaaaaatggctaggttgtagaaa
agatgtcacggaacccaaggcaaagaattatgaaattgtcaatatatttt
atttttcagttagaaaaataccaaaatatctCACACGGGACCACGGGACG
AAACGATGTAAACAATTGAAAGAATACTCAAAGCGATGAAACAACACGAA
CACCCTCGCGCCATCCGGGAATATTATGCTAATCGCAgcttaaaaatgag
aaagtaAGTATGATTATACATCTTGACTTGTTCCAcccacaaaccaaatt
cttGCAAATCTATTAAAGGGTAAACTTCTGTGCTTCAATGCCTCAGAGTG
TTTGTGCCCGTACCCCGTTTATTTCTCTGTGCTATAATTTCATTACTTTT
ACTCCAGGACTGGTAGCTTTTATgtggcactgagacaggggtatatttAG
AATAAGAGCCTTTTTAGACTAATTACCCAGGGTACTCATTTTTAACGGAC
AAGGCAGGCCCAGTGAGAACCCTAGCCATTTGAAAAAATCGTCATCCTCT
ATGGAAACTTCACTTGTATGTATAAGAGGAGTAATGAATAATCTAGTAAT
TGAGACTGGATCTTTGTACTATTATCGTGAAATCTAAATCCACTAAATAC
AGACCTTTGTTATATTGGTTTTTATGTTCTTTTATGTCCTTTTATGTCCC
TTTCCTAACGGGCTAATAAACGACTCGGACTTTTTGAGACAGGGACGTTC
CCCTCGCACAAATGAAACATGTATAACAACgcttccattttttttttcag
gacagACAAATATTATCGTCAAGCTGTGAAGTAAAAATTGATGGTAGTGT
TACCCAATTGTAATTTATCGAAAGTGTACGTAAGGTAAAAAAGCTAAAAG
AATAAAAGTTTATCTGGCTAAAAATTATAAAAGCCATGGATCATTTTACA
ATTAGAAATATCTTTGTcttcttttcgtttttcttctaGCGCCGGACCCG
ATTTCTAGATAGAGATAAATACAAT

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_003437	XLOC_003437	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00006021-exon-sc0000062-1491911889:571240..571267	TCONS_00006021-exon-sc0000062-1491911889:571240..571267	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1510915933:571240..571267	TCONS_00006021-exon-sc0000062-1510915933:571240..571267	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1575043694:571240..571267	TCONS_00006021-exon-sc0000062-1575043694:571240..571267	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1491911889:575899..576042	TCONS_00006021-exon-sc0000062-1491911889:575899..576042	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1510915933:575899..576042	TCONS_00006021-exon-sc0000062-1510915933:575899..576042	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1575043694:575899..576042	TCONS_00006021-exon-sc0000062-1575043694:575899..576042	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1491911889:576590..576814	TCONS_00006021-exon-sc0000062-1491911889:576590..576814	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1510915933:576590..576814	TCONS_00006021-exon-sc0000062-1510915933:576590..576814	Clytia hemisphaerica	exon
TCONS_00006021-exon-sc0000062-1575043694:576590..576814	TCONS_00006021-exon-sc0000062-1575043694:576590..576814	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
sc0000062	supercontig	sc0000062:571240..576814 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0.268596	0.209041	1.52693	0.81913	3.57547	1.14667	3.31788	3.83007	2.34886	3.97716	2.25707	2.15754	0.499007	0.751628	1.16362	0.819099	0	0.645622	0.649796	0.9235	0.272188	0.931218	0.607833	1.62743	0	0.443035	0.944446	0.320142

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00006021 vs. Swiss-Prot (Human)

BLAST of TCONS_00006021 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00006021 (transcript) - C. hemisphaerica