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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00006023 ID=TCONS_00006023|Name=TCONS_00006023|organism=Clytia hemisphaerica|type=transcript|length=3500bpRun BLAST on NCBI transcript from alignment at sc0000062:579332..607047+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00006023 ID=TCONS_00006023|Name=TCONS_00006023|organism=Clytia hemisphaerica|type=transcript|length=27716bp|location=Sequence derived from alignment at sc0000062:579332..607047+ (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Blast
BLAST of TCONS_00006023 vs. Swiss-Prot (Human)
Match: SCYL2 (SCY1-like protein 2 OS=Homo sapiens GN=SCYL2 PE=1 SV=1) HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0 Identity = 307/597 (51.42%), Postives = 423/597 (70.85%), Query Frame = 3
Query: 258 GSLKNAVLGNPVLREFTIGTQVASFGPGLLWKIFDGKKKSTGQEVSVFIFEKSQIEKYGRRDKEEILDKMKRGPQQLIKLRHPRILTVQHPLEESRDSLAFATEPLFSSLSNAFEKHENFPSGMPPHLKGFEMYAVEKVYGLLQIAEGLSFLHNDANMSEGNLTPDNIIITKGGQWKLAGFHFSLSKSNPGTRS------EYTTKIAPVARQDLNYLSPEWIFSQAGALDFDLSKTDMFSFGCLVSAVYNQLKTPFDAG--DNIAMYKKCTEQLSRLGSDYLKNVPLAVRDHVSLLLNASGDVRPDAGSTLTHPFFDDVAAMTLKYLDSLVQRDDVTKSQFFKNLHHVLDKLPLRVLHQRVLPPLFLEFPNHMMLPFVLPNVFAVAEKSSKDEYMNIIFPELKKVFSVVKPIQVLLIFMQKMELMLKLTDKDNVKNHVLPLVHKAFESNNDQIQELVLTIIPGFVHMIDYSSLKNQIIPRLRGLITRTNSLRIRVNALVCVGKLVDQMDKFLLVDEIFPMFQKIPSREPAVLMAMLGIYKQTLVQSKISLEKDYLATRVLPFLIPLSIEPTLNASQFNNFMSVIRQMFDRVEQEHRT 2024
+ +AV+GNPV REF +G +AS G GL WKIF+G KKST QEV+VF+F+K I+KY + +K++I+D +KRG QQL +LRHPR+LTVQHPLEESRD LAF TEP+F+SL+N EN PS + P +K +++Y VE YGLLQ++EGLSFLH+ M GN+TP+NII+ K G WK+ GF F +S +NP + E+ + + + YL+PE+I S + + +DM+S G ++ AV+N+ K F+ D + + +QLSRLGS L N+P VR+HV LLLN + VRPDA PFFDDV A+TL+Y D+L QRD++ KSQFFK L VL KLP RV+ QR+LP L EF N M+PFVLPNV +AE+ +K+EY+ +I PEL VF +PIQ+LLIF+QKM+L+L T D +KN VLP+V++A E+ + QIQEL L IIP F ++IDY S+KN +IPR++ +T+SL +RVN+LVC+GK+++ +DK+ ++D+I P Q+IPS+EPAVLM +LGIYK T K+ + K+ LA +VLP LIPLSIE LN +QFN+F+SVI++M +R+E EH+T
Sbjct: 17 ADVTSAVMGNPVTREFDVGRHIASGGNGLAWKIFNGTKKSTKQEVAVFVFDKKLIDKYQKFEKDQIIDSLKRGVQQLTRLRHPRLLTVQHPLEESRDCLAFCTEPVFASLANVLGNWENLPSPISPDIKDYKLYDVETKYGLLQVSEGLSFLHSSVKMVHGNITPENIILNKSGAWKIMGFDFCVSSTNPSEQEPKFPCKEWDPNLPSLCLPNPEYLAPEYILSVSCE-----TASDMYSLGTVMYAVFNKGKPIFEVNKQDIYKSFSRQLDQLSRLGSSSLTNIPEEVREHVKLLLNVTPTVRPDADQMTKIPFFDDVGAVTLQYFDTLFQRDNLQKSQFFKGLPKVLPKLPKRVIVQRILPCLTSEFVNPDMVPFVLPNVLLIAEECTKEEYVKLILPELGPVFKQQEPIQILLIFLQKMDLLLTKTPPDEIKNSVLPMVYRALEAPSIQIQELCLNIIPTFANLIDYPSMKNALIPRIKNACLQTSSLAVRVNSLVCLGKILEYLDKWFVLDDILPFLQQIPSKEPAVLMGILGIYKCTFTHKKLGITKEQLAGKVLPHLIPLSIENNLNLNQFNSFISVIKEMLNRLESEHKT 608 The following BLAST results are available for this feature:
BLAST of TCONS_00006023 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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