TCONS_00006080 (transcript) - C. hemisphaerica

Overview
NameTCONS_00006080
Unique NameTCONS_00006080
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1174

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00006080 ID=TCONS_00006080|Name=TCONS_00006080|organism=Clytia hemisphaerica|type=transcript|length=1174bp
TACATAAGCGGGGTGAGTGGAAAGATTCTCTAAACTTAATTAGTGCCCCT
CACCCGCTTATTAGGTTCTTACTGAAATTCATATTCATTTATTTCTTTAA
GATAATGTATAGTAAAATATATGCTGCTACAACCAAAGGTGATATAAATA
TTctccaacaacaacaaacaaagtCAGGTAAAGCACCGCGATCGAAACTA
GCATTAACTGGACTTGCTATAACAGGAGGATTGGCTGTCGGTGTATCTTT
AGTGACATTCTCTTTTATATCACCTGCACTCCGTCGCATATGTCTTCCCT
TTGTACCTGCCACAGATAATCAAATCTCTAATGTATTGAAACTGTGTAAA
AAGAAACAAGGTGGAGGAGGGAGTTTAGTTGATCTTGGGAGTGGAGATGG
AAGGATTGTGTTTTCTGCTGCGAAGAATGGTTACCAGGCTACAGGGTATG
AGTTGAACCTTTGGTTAGTTCTATATTCAAAAATATCAGCAAGGATGCAG
AATTTATGGCCAAATGCGAAATTTGAGCGAAAAGACTTATGGAAAGTTGA
CTATAAACAATTTGATAATATTGTGATTTTTGGTGTTGCTGACATGATGA
ATGAGTTGTCAATTAAACTAGAAAATGATATGGATGATAATTCTCGTGTG
ATTGCTTGCCGTTTTGAAATACCTCGATGGAAACCTGTCAAAGAAATTCA
AGATGGTATCGATTCAACTTGGTTATACACTAGAGAAAGTTTCAACAGAA
CGCAGCCTACTGAAGATACTAGTGAGTGATTATTGtaccatttttttatt
tttattgtagAAGCTATGACCAAAAAACTGATACTGAAACAActtaaatt
tgatctttttggtTGGTGGTTTTTCGAAAACCTATTTTAGACACGTTTGT
TCGATTTTCAATCGTTCCGACAGGGGTTATAGCCATCTCCTACCATCCCC
TATCGAATTTGGGTCTCACTTTGCTATAGGACGTTTCAGATTCCCTGGTA
TTTTGTCATTAACACACAGCACTCGCGGGTGATTTGCGCAAAATTgttcc
aaaatgaaaaatgacacgGTTTTCCAGATTATTTAAGCTCGCTGTGAGAT
AAGTAAACTTTTTTTGGCCGAAAATTAGTGTAATGGGGTTGTTTTGCtgg
aacaagcaaaaaaaaattccaggt
Run BLAST on NCBI

transcript from alignment at sc0000062:637095..638268-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00006080 ID=TCONS_00006080|Name=TCONS_00006080|organism=Clytia hemisphaerica|type=transcript|length=1174bp|location=Sequence derived from alignment at sc0000062:637095..638268- (Clytia hemisphaerica)
TACATAAGCGGGGTGAGTGGAAAGATTCTCTAAACTTAATTAGTGCCCCT
CACCCGCTTATTAGGTTCTTACTGAAATTCATATTCATTTATTTCTTTAA
GATAATGTATAGTAAAATATATGCTGCTACAACCAAAGGTGATATAAATA
TTCTCCAACAACAACAAACAAAGTCAGGTAAAGCACCGCGATCGAAACTA
GCATTAACTGGACTTGCTATAACAGGAGGATTGGCTGTCGGTGTATCTTT
AGTGACATTCTCTTTTATATCACCTGCACTCCGTCGCATATGTCTTCCCT
TTGTACCTGCCACAGATAATCAAATCTCTAATGTATTGAAACTGTGTAAA
AAGAAACAAGGTGGAGGAGGGAGTTTAGTTGATCTTGGGAGTGGAGATGG
AAGGATTGTGTTTTCTGCTGCGAAGAATGGTTACCAGGCTACAGGGTATG
AGTTGAACCTTTGGTTAGTTCTATATTCAAAAATATCAGCAAGGATGCAG
AATTTATGGCCAAATGCGAAATTTGAGCGAAAAGACTTATGGAAAGTTGA
CTATAAACAATTTGATAATATTGTGATTTTTGGTGTTGCTGACATGATGA
ATGAGTTGTCAATTAAACTAGAAAATGATATGGATGATAATTCTCGTGTG
ATTGCTTGCCGTTTTGAAATACCTCGATGGAAACCTGTCAAAGAAATTCA
AGATGGTATCGATTCAACTTGGTTATACACTAGAGAAAGTTTCAACAGAA
CGCAGCCTACTGAAGATACTAGTGAGTGATTATTGTACCATTTTTTTATT
TTTATTGTAGAAGCTATGACCAAAAAACTGATACTGAAACAACTTAAATT
TGATCTTTTTGGTTGGTGGTTTTTCGAAAACCTATTTTAGACACGTTTGT
TCGATTTTCAATCGTTCCGACAGGGGTTATAGCCATCTCCTACCATCCCC
TATCGAATTTGGGTCTCACTTTGCTATAGGACGTTTCAGATTCCCTGGTA
TTTTGTCATTAACACACAGCACTCGCGGGTGATTTGCGCAAAATTGTTCC
AAAATGAAAAATGACACGGTTTTCCAGATTATTTAAGCTCGCTGTGAGAT
AAGTAAACTTTTTTTGGCCGAAAATTAGTGTAATGGGGTTGTTTTGCTGG
AACAAGCAAAAAAAAATTCCAGGT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_003456XLOC_003456Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00006080-exon-sc0000062-1575043694:637095..638268TCONS_00006080-exon-sc0000062-1575043694:637095..638268Clytia hemisphaericaexon
TCONS_00006080-exon-sc0000062-1510915933:637095..638268TCONS_00006080-exon-sc0000062-1510915933:637095..638268Clytia hemisphaericaexon
TCONS_00006080-exon-sc0000062-1491911889:637095..638268TCONS_00006080-exon-sc0000062-1491911889:637095..638268Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000062supercontigsc0000062:637095..638268 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.71626	4.15579	2.45235	2.24925	3.64835	2.09859	1.89525	2.83889	2.89014	2.39131	2.21079	1.4484	1.52471	1.97368	1.8686	1.92636	6.00942	4.98128	0.290306	1.65578	2.51365	2.56311	2.67942	1.90508	1.58272	2.44841	3.01193	2.85181	2.29913	1.5733
Blast
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BLAST of TCONS_00006080 vs. Swiss-Prot (Human)
Match: F173B (Protein FAM173B OS=Homo sapiens GN=FAM173B PE=1 SV=2)

HSP 1 Score: 152.525 bits (384), Expect = 5.719e-43
Identity = 79/174 (45.40%), Postives = 108/174 (62.07%), Query Frame = 3 
Query:  252 VTFSFISPALRRICLPFVPATDNQISNVXXXXXXXXXXXXXXXXXXXXXXRIVFSAAKNGYQATGYELNLWLVLYSKISARMQNLWPNAKFERKDLWKVDYKQFDNIVIFGVADMMNELSIKLENDMDDNSRVIACRFEIPRWKPVKEIQDGIDSTWLYTRESFNRTQPTEDTS 773
            V   F++PALR++CLPFVPAT  QI NV+K+ + ++G    +        RIV +AAK G+ A GYELN WLV YS+  A  + +  +AKF   DLWKV + Q+ N+VIFGV  MM +L  KLE +++D++RVIACRF  P W P     +GID+ W Y   +F   +    TS
Sbjct:   54 VATPFVTPALRKVCLPFVPATTKQIENVVKMLRCRRGSLVDIGSGDG---RIVIAAAKKGFTAVGYELNPWLVWYSRYRAWREGVHGSAKFYISDLWKVTFSQYSNVVIFGVPQMMLQLEKKLERELEDDARVIACRFPFPHWTPDHVTGEGIDTVWAYDASTFRGREKRPCTS 224
The following BLAST results are available for this feature:
BLAST of TCONS_00006080 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
F173B5.719e-4345.40Protein FAM173B OS=Homo sapiens GN=FAM173B PE=1 SV... [more]
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